LOC120546055 (LOC103360654,LOC104934677,LOC104958911)


Basic Information

Item Value
gene id LOC120546055
gene name LOC103360654,LOC104934677,LOC104958911
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18558560 ~ 18560433 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780811.1
AGCTCACACATACCAAGTCATTCTCATCCCTTAGATCACACTTAATGCTGGACAGAATGAATCAGCTGGGTATATAAAGTGTGTGAGTAGAGCATTACAGGTGCCAAAGCAGCCTTTACCTCAGACCTCCTGCTCACTTTCTGTTGAGAATAAAAATACAGCTGACCATTGCTTAGTTTCCAGGTCATCAATCTAGACTTTGTTTGTTAGGGTGGAGCTACAGTCTTTTGCAGTTTCAACATAATTTCCCTTCATTCCGAGCTTATTTTCTAGGATATGGgggaacaaaataaaatattatccCGTCCCATTTTCCGCCGAGATGTAAGCTGGGATCCTTTCCCAAACTGGACGCAGCCGAGCCGAATCTTTGCGCAGGATTTTGGACTCCCTCCATTCCTGGAACCTAGTGATCTGGACTGGATAGAGTGGTCAAAGAGGAGACTAGCATCTTTCTCCTGGCCAGGGTACACACAAACTCCCCTTCTGCCTCCATTCATTGGTCAGCACCCTGCAGCGTTGAACCAAAAGGGTCTGAGACAACTGACAAGTGGAGTGTCAGAGATCCGAACAGGGCAGGACAGCTGGAAGATTAACCTGGACGTCAATCACTTTTCGCCTGAGGAAATTACAATCACAACCAAGGAGGGTTATTTGCAAATATCAGGAAATCATGAAGAAAAGCAGGATGAGCATGGCTCGGTGTCAAGGTGCTTCACCCGGAAATACAAgcttCCGCAGGGGGTGGACTTGCAGCACATCAGTTCTTCTCTGTCTGGTGATGGAGTTCTGTCCGTAGAGGCCCCCACCCCCGGGACATCCATCAGCATTCCAGCGAATGAGATTGTCATACCTGTACAGATCAGACAGACGCAGGATGGTGAAAAGTGAGACCAGTAAGCAAGACTTTAAAACTACAATCAGATGTAGCAAGTTGTCTGTAGCAACCTTTATGGTATGGGCATGAAGAAGTTTGTTCTTTACTGTAACAACTAGCTTGTGTTCCTGCTATGAGATACTAATACTGTAATGCATTGTCACCAGTCAATACACCACAATACCATGTCACAATTACTTAAAATGCAGACTCATCAATATAACACATAACCAAGTATATAACTGAAATGAACACATACCTGAAAATAAGGAATTCATTTAGCTTGTCAGCACTTATAAATGGATTAGCAGTACCTTGTATTCCTAACAACATACTGTAGTTGTGACCTCACATGACCTAAGGGACTGTGGAGATTATGGCTGACAATACTGGCCAAGAATGGACAGTGGACTGGATTATTTATATCtaaacagtttatttatttaatgacaAACAGGTATGTATATTAAATTGTGCTTCTGTATAACATGGCAAGATGATTAATACATCATTTGgttgaaatttgttttgcttttgatGAAGAGAAACACTGCAACTGTGtactgctgtgtgtttgtcctAAAGGTGTACATTGCTGTATTGAATAACCAGCCTAATGAGCATGTCCTGatatataatatttaacaaATGTATTAGCTTctgctatataaattaaaaaacaatgtcATTTTCTC

Function

NR:

description
PREDICTED: heat shock protein beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780811.1 True 1572 mRNA 0.41 3 18558560 18560433

Neighbor

gene id symbol gene type direction distance location
LOC120546054 susd2 coding upstream 1100 18548787 ~ 18557460 (+)
LOC120546057 iscu,LOC100705178,LOC102784710,LOC103373105,LOC104958920,LOC101065972,LOC105915304,LOC101167135 coding upstream 84521 18471247 ~ 18474039 (+)
LOC120545648 NA coding upstream 96788 18458512 ~ 18461772 (+)
setd1ba setd1b coding upstream 137111 18405378 ~ 18421449 (+)
orai1b orai1,LOC103390458 coding upstream 171088 18384808 ~ 18387472 (+)
taok3b LOC104958930,LOC103360656 coding downstream 2007 18562440 ~ 18571048 (+)
m17 NA coding downstream 13231 18573664 ~ 18575134 (+)
git2b LOC103360644 coding downstream 144340 18704773 ~ 18723257 (+)
LOC120545567 LOC102210433,LOC104924646,LOC102792360,LOC100707569,LOC104958897 coding downstream 163452 18723885 ~ 18726384 (+)
cplane1 NA coding downstream 191611 18752044 ~ 18772197 (+)
G175804 rnf185 non-coding upstream 92496 18464270 ~ 18466064 (+)
G175797 NA non-coding upstream 107492 18449802 ~ 18451068 (+)
G175792 NA non-coding upstream 126863 18429684 ~ 18431697 (+)
G175772 NA non-coding upstream 135882 18421529 ~ 18422678 (+)
G175696 NA non-coding upstream 319613 18235236 ~ 18238947 (+)
G175891 NA non-coding downstream 27326 18587759 ~ 18588293 (+)
G175917 NA non-coding downstream 97257 18657690 ~ 18658284 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding downstream 109950 18670383 ~ 18673965 (+)
G175974 NA non-coding downstream 275742 18836175 ~ 18836754 (+)
G175973 NA non-coding downstream 290645 18851078 ~ 18854548 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other upstream 10419 18536631 ~ 18548141 (+)
tmem120b tmem120b,LOC101471304,LOC102195879 other upstream 158114 18391739 ~ 18400446 (+)
lrrc75bb LOC102299816,LOC101473269,LOC102199085,LOC100691028,LOC103366102 other upstream 229735 18295836 ~ 18328825 (+)
antxr1b LOC100694769,LOC102799311,LOC101477777,LOC102295999 other upstream 413110 18124842 ~ 18145450 (+)
LOC120545364 NA other upstream 478109 18075032 ~ 18080451 (+)
cabp7b cabp7,LOC104925332 other downstream 74593 18635026 ~ 18651069 (+)
LOC120545610 NA other downstream 96091 18656524 ~ 18657619 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other downstream 115588 18676021 ~ 18723785 (+)
LOC120545529 ermp1,LOC102800265 other downstream 819817 19380250 ~ 19402379 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other downstream 1351403 19911836 ~ 19914680 (+)

Expression


Co-expression Network