gtf3c5


Basic Information

Item Value
gene id gtf3c5
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9972694 ~ 9984025 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780816.1
CGGCGTTATTTtgcacttgcacacacacactcacgctgTTGTACAGGAGCGGGTCTTCTTATGTAGCTAGTGTCAGTGTTATGCCAGCGTGAATATCCCAATTAAAACAGACACTATGGCGGATTTAAGGGAGTGTAAGATGGATTTTACTCTGAAAGAACTGACTCTTTCATGTCAGACTGAAGACGCAGATATTCCCGGCAGCTCGTCCAGCGTGGAGCTGAAGGACAAGAAACTGGTGTGTGTGGAGTATCCGGCGTTGGTTACCAGTGTGGACAAGATGCTGGAGACTCTCGGAGGGGAAAAGGCTGTGTCTAAATCCTTCGCTCACCCCAACAGGCGTCTTGAGCTACGCTTCCGACCTAAGGACCCTTTCTGTCACCCTCTGTGTGGAAACCGCTTCCCATCAAGCAACCTCGTACTCAGAGTGCGGCGACGGGTGCGTAAAAAGGACCCCAAGGACGCCGAGATCCACATGGATATACTTGGAGTAATAGGAACGACATACAAATTCCAAGGGATGGCAGACTTTCAGTGCCTAGCTGTGCACTCAGAAGGAGGAAAAGACACTTCTTTGTACGACAAAATCATCCTCCGCAAATCAGAGAACCAAGAGTTCTTTGAGAAGCCCGTGCCCCTCTTTCTTCCCCCTGCCATCTTCTCACGCCTCGACTGTCCTGTGGATTATTATTACCGGCCTGACGTCTATCAAAAGTCACACCAGGAATTCGGTAACAACAGGAACTTTATTGGTTTGAATCGAGCTCGACGGCCCCACAACGCCATTTTTGTCAGCTTCACTGAGCCCACTGTGCCCACTGAGTGCCTGGAGGCAGCCAAGGAAAACTGGGCACGAATCTCCGTGAAGGAGAGTGACAGGCAGGCTGAAGAACAACTGAGAAAAATGTTTGAGAGCCGGCCCATCTGGTCCCGGAACGCCGTCAAGGCCAACATCAACATCCACCCTGATAAACTCAAACTGCTGCTGCCTGTCTTCGCCTACTACATGGTGACAGGGCCGTGGAGAAGTCTGTGGGTGAAGCTGGGCTATGACCCCCGAAAGAGAACCGACTCCAAGCAATACCAGCTGCTGGACTTCAGGATCCGCTGTAGCACCAAGCACGGGTATTCTATATCTGACATGCCGGTCAAAGCCAAGAGGAGTGCCCTTAACTACAGTCTGCCTATCACATTTAACAAATCTGGTCCCCAGGCAGCAAGTGTGATGGAACTTCCAGCTCAGGAGGGTCCAAGCATCAGTCGAGATCCCGTCCCAGTCTCTTACCAGCTGAAGGAGGCATCCTACATATTCAGAGAAGGCATGCTGCCTCCTCACAGACAGATGTTTTACCAGCTCTGTGATTTGGATGTGGAAAGTATCAAAAAGGTGATTGAGCAGAAGGGCGATGAGCAGGTGTGTGACGAGCGGGACGGCTGGTGTCGCCTCGGGACCACCGACCACCTGAGGGACATGATCTCTGCCATGATCAAGAAGCTCATCCGAGCCCAGAAACCAGcattgccagacctcccGAAGAAGCGCCGACGCGCTACCCCAATTTCCAAATACCCAGGGAGAGATTCGGATTCAGATGAAGAGGTGCAGGACGACGACAAggatgatgatgaagaagaagatgaagacgaGGAGTTCCTGCCGTCGGAGGGCAGTGAAAACGAGATGGAGACAGAAATTCTGGATTACATGTAGCAAAACATAACCACTTTGATGACATTAATCTCGACTGTTAATATCTTACGTAATTCTGTTAAAAAAGACATGTTTGAAGGATGTAAATAAACATGGCAATATTTCTAGTG

Function

NR:

description
PREDICTED: general transcription factor 3C polypeptide 5

GO: NA

KEGG:

id description
K15202 GTF3C5, TFC1; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780816.1 True 1821 mRNA 0.50 11 9972694 9984025

Neighbor

gene id symbol gene type direction distance location
LOC120544999 LOC103362077 coding downstream 844 9966088 ~ 9971850 (-)
LOC120545003 LOC103362077 coding downstream 9078 9958707 ~ 9963616 (-)
LOC120544997 LOC103362077 coding downstream 17957 9950160 ~ 9954737 (-)
LOC120544996 LOC104958126 coding downstream 23897 9942713 ~ 9948797 (-)
zgc:92275 LOC107665231,LOC107754619,LOC106565467 coding downstream 33744 9923206 ~ 9938950 (-)
gfi1b gfi1b coding upstream 9573 9993598 ~ 9999567 (-)
barhl1b barhl1,LOC100712077,LOC102792687 coding upstream 159045 10143070 ~ 10150003 (-)
gsna gsn coding upstream 217041 10201066 ~ 10226381 (-)
si:ch211-127i16.2 LOC103374795,LOC101469412,LOC102289489,LOC100706625,LOC102789715 coding upstream 788832 10772857 ~ 10824728 (-)
vav2 vav2 coding upstream 929689 10913714 ~ 11140925 (-)
G174116 NA non-coding downstream 175723 9795843 ~ 9796971 (-)
LOC120545476 NA non-coding downstream 634276 9337767 ~ 9338418 (-)
G173944 NA non-coding downstream 674216 9297725 ~ 9298478 (-)
G173943 NA non-coding downstream 675080 9296393 ~ 9297614 (-)
G173942 NA non-coding downstream 687361 9285076 ~ 9285333 (-)
G174139 NA non-coding upstream 60607 10044632 ~ 10045354 (-)
G174143 NA non-coding upstream 104257 10088282 ~ 10088523 (-)
G174166 NA non-coding upstream 211051 10195076 ~ 10284037 (-)
G174168 NA non-coding upstream 252720 10236745 ~ 10239274 (-)
G174196 NA non-coding upstream 347302 10331327 ~ 10335010 (-)
grin1a grin1a,LOC107600932,LOC103389281,LOC105024190,LOC106513393,LOC100534577,LOC101475684,LOC104936329,LOC102201489,LOC102777117,LOC102302700 other downstream 69687 9861001 ~ 9903007 (-)
G174120 NA other downstream 129195 9842812 ~ 9843499 (-)
G173900 NA other downstream 901486 9070162 ~ 9071208 (-)
LOC120545754 zfand5,LOC102789640,LOC104922891,LOC103362637,LOC102194010,LOC102308986 other downstream 1338627 8625482 ~ 8634067 (-)
G173727 LOC107687935 other downstream 1614667 8357723 ~ 8358027 (-)
gtf3c4 gtf3c4,LOC102793669 other upstream 113226 10097251 ~ 10108289 (-)
adra1ab LOC104947653,LOC100705829 other upstream 394931 10378956 ~ 10395744 (-)
LOC120545042 NA other upstream 1169742 11153767 ~ 11164494 (-)
G174439 NA other upstream 2372903 12356928 ~ 12357890 (-)
G174442 lpar1 other upstream 2406530 12390555 ~ 12391484 (-)

Expression


Co-expression Network