skor2 (skor2)


Basic Information

Item Value
gene id skor2
gene name skor2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 13444706 ~ 13457895 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780835.1
CTCACGAGCAGCTCACTCGACAGTTGAGACGAAGGCGGGTACCGATTCCGTGTGTTTCCCGGACATAACTCAGTAAAATCTGTCCGTTTCCTTGCTAAAAATGAGTTTTTTAAAGCTGTGTAGGATACATCGATTTGTCTCGTGACGGGGATATTTTTGGACTCAGTGACCGTTTTGGGAGTATTCTTGGGAGTCAGAGGTCTTTCTACCAACAGTTTTCCTCCAAGTATGGACAAGACCCATCTTTCGAGCCCTAATGATATCATAATGACGAGCTCAACAGGCCCCTACCAGCAGGAACCCCTGACACCACCCAGACCCGCCCATCTCCACTCCTCATCCTCTTCCTTATCCTCCCCCTCTccgtcctcttcctcttcacCCATGAAGCCAAACCAGGTCGGCCAGGTCATCCTATACGGCGTTCCCATTGTATCGCTGGTCATTGATCACAATGAGAGACTTTGCCTGGCACAGATTTCTAACACGCTCCTCAAGAACTACAGTTATAATGAGATTCATAATCGCCGCGTGGCGCTGGGCATCACCTGTGTCCAGTGCACTCCGGTTCAGTTGGAGATTCTTCGCCGGGCCGGTGCCATGCCCATCTCGTCACGCCGTTGTGGCATGATCACCAAGCGCGAAGCTGAGCGCCTCTGCAAGTCCTTCCTGGGAGAGAACGCACCGCCGAAACTGCCAGATAACTTTGCCTTTGATGTGACACACGAGTGCGCCTGGGGTTGCCGTGGTAACTTCATCCCGGCACGCTACAACAGCTCCAGGGCCAAATGCATCAAGTGCTCCTTGTGCAACATGTACTTCTCCCCAAATAAGTTCATTTTCCATTCCCACCGCACACCAGACGCCAAGTACACCCAGCCCGACGCCGCCAACTTTAACTCCTGGCGACGGCACCTCAAACTCTCTGACAAACACCCAGCTGATGAGATGGTCTTCGCATGGGAAGACGTCAAAGCTATGTTCAATGGAGGTAGCCGGAAGAGAGCGCTGCCCTCCTCAGCCCATTGTTCCTCCATCGGTTCTATGAAGACTCTCCCAGGTTCGGTGTCTCACATGATGGGTGACTTGGGTGCTCAGAAAAGAGCCCGCTTTGAAGATGAGGATGATCTGGATGGAGGCAGTCTGTCTCCCCGTAAGACACCACGTAGCTACCCTGTCATCCCTGTCCCAAGCAAAGGCTTTGGCATGCTGCAGAAGTTCCCTCCCACGTCGCTCTTTCCCTCGCCTTACCCCTTCCCAGCATTCGGCCTCTGCCAGCAGAAAAAAGATGACAGTGATGTTTCCGGTGGGCAGAAAGGAGCAGGGTTGTCAGGTCTTTTATGGCCTGGCCGCAAAGACACTTTTTATCCTCCTTTCTGCATGTTTTGGCCACCAAGAGCGGCAGGAGGAATCCCTGTCCCCACCTACCTCCAGCCTCAGCCCAGCGCCCTCTCCTCTTTGGCAGACAACCCTTCTCTCAGGCAGGCCTTTTTGGATCTCTCAGAACCCAGCGAGCCTGTAGCTGTAACCGGCAACGAAAGTAGCGTCAGCGCGACCATGGCCCCCGGCAGCACGACAACCACACCCAGATCATCTGGGCTGTTTGACCCAGAATGCACCACAGTAACACCTGACCTTCGCCCTGTGACATCAGAGGGCTGGCTCAAACTCCTGGACACCCCAACCTTCCAAGCCAGGAAGCCGAGCTACGGCTCAGCCTTCCGACCTGTGATCAAGGATGCCGAGAGCATGGCCAAGCTCCACAGCAACGGCGGAGCAGTCGCTGGGGCAACAGACGAGGACTTTGGGGTCGTGGTCGCCCGGTCAGACCGCCAACAGCGGCTGTCGCCCAGCAGCAGCTGTAGTTACGGGAGTGAAAGTGGAGGCGATGGAGAGGTGGAGGGAGTGGagagtgaggaggagggggaggtggaTGTGGAGTCGTcgaagcaggaggaggaggaggaggaggggagctTCACAAACAGGCCGCCACAGACTCAAAGCAACCTGTTTCTCCCTGCGTTGAGCGACGGTcatggagaggagagggggaaggagagagggagtggcGCTGTGTATACCAGcacctcccctccctcctcctcggACCCCATCCAGCGGGagtcccccagcctgcctgccTCCCCTACTGCcagcctgcctctctccagctcCACCCCGCCTCACCGAGATGACCCAGCTTACAAAAACgttCACAAAAATAGAGATGAAGGACTACCTGTGTACGCAACCAAAGACAACTCCAGCATTTCTGATGAAAACAAAGAGCAGAATAGTTTCTTCGTACCAGACAGTGAAACGTCAGCACCCGACTACTGGAGGGAAAGCTCAGGTGATCGAAGCCAAGGTGCTGCCTCTCCGGTGCCGCTAAAGAAGGACGTTGAGAACATGGAGAAAGAGGAGCTCCAGAAGGTTCTGCTGGAGCAGATTGACTTCAGGAGGAGACTGGAGCAAGAGTTTCACGCTCTGAAGGGCACCTCACCATTTCCTGTCTTCCATAATTTCCAAGACCAGATGAAACGAGAGCTCGCCTACAGAGAAGAGATGGTCCAGCAATTACAGATGATTCCCTACGCAAACATCCTCAGAAAAGAAAAGATCAGCTCCCATCTCAACAAGTAAACATaagGCTGAGTCAAGAAAATCCCACGTGAGAGGAAGAAGCTGCCTGGATTTCTGTAAATTTaccaagaaggaaaaaaaacaaacatgaaaaccGACAGAGAAATataggagagaggagagagacacaaacagaaagaaatatGACACTATAGTATATAAATATGTTTTCCTTGGACAGTGTTTTATTTCTGATTCTGTACTACAACCTCTGTTAATAGCCCTGCACTTAAACTCTGtcttacaaaaacacatttggacCAGTTTGTCTGTGGGGTGGCACACTGATAAAAGTTTCATCCCTGTCTCCTTTTCCCTGGGTTCACTTTATTTCCCAAACGGTCTGAACTGAAATGGGCACAAACTGACGACATCAGGGGAAACAGAATGACTCCTGCTCTTTCCTCATTGCTGCACTGGCAGTCAGACTCAAAGCTTTACCCAACCAGGACCAAAGCAACCACAACCTTTCTCGTCTTTCGTGAATTTTAGGGCTGTTAAAGACCACCAGGAAGGCAGTTGGAGACtttgtcacaaaaaaacaaaaaaactctgaaatGTTATGAGCTCTTTAAAGATGAAGAGCAAGAAGAAAGAGTCATAGATACAGTAAGAATGGCTGTTATTGTCCACGACTCTGACTGCTGCTGGCCCAACTGTACATACACCAGACTGTGGATGAGGATGGACTTCACACTAagattgttgctgttgttgttattattgatGTTGCCGTGGTATCACCAAATGGGGACCCTAACGAGAAACAAACATTCCAAGCTTTATGTATTGGCAACATTTGATCCTAAAGGGATTCTCCTCATCGTGTCCAGTTGTGTTTAATGACCAAAAGAAATCATTATTTCCACTGATTATCAACATGGTCAATCATCACTGATGAGGTCAGATGCATCATGTCTAGTCTGTTAGATGACCCGAACTTGAATATGCCAGATGAAGAACAAAATAAAGGGGGGAAATGAATGTAGTATTGGTGTTTTGGATGCAATGAGACCATTATTAATAGAGGGTGGTATCGCAAAAAGGTTCACGCTTTAAGCAAACAGTTTGTACTCATAGTTTTAGTATTTGGGAGTGATTTCtgagtgaataaaaaaataattaagtaTTATGTTCAATGCAGATGTTGCTGCACTGATTATACGTTGTTCACCTTTTATTCATACAGGAAGAGTTACCTCAACAACATCCTGTGTCACATAGTTAAGAAGCAGTGTTCTTCTGTTAATTATATCGAACATCTGGAGAATCCTTCGCTCAAAGGCACCCTGAAAGTATTGTTAACCCTTCGCCCAAATTTTCTAACCATCAACCCACAGGCTTTACCTCCAGTCAGAGGGGAAGGTAATATTGCCATCATGGGCTAAATGTGTGGGGTGTGATCAGATGGGGAATCGACATTTAAAGGCCAATTCTTTTTACTTGTTTGCCAACCAAATGAGTGTCCAGGCAACGAGGAGCAAAAGACTGAAGTTTGTCAGTGTTGTATATCTACCTGTAAATTATTTTTGCCTGACTGTATAAACTGTCATAGTGAGAATACTGAACCTCACAGTCAGTCTAtctatatgtgtttgtttgtttatttatttgagtaTCAGGGCCTAAGACCCTGATTgtgaaaatattatttattataatgttaaagaaaaagaaagcaacatgatgatgatgatgatggtgcaGTCAGAGTATGTCAGAGAGAATAAAAATGAGAACTCACTCATCTTGtttataaaatgaaatgaatgaatggataaaGTTGTCATTTACTGAGAGCAATGTTATCATCATAAACTGTTAATGCAGATGTATTTACATATGTTCTTGTAGTTTCTCTACTACTTATGTGTAAATTAAAAGTCTATACAATAA

Function

symbol description
skor2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Predicted to be involved in negative regulation of BMP signaling pathway and negative regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in Purkinje cell and spinal cord interneuron. Orthologous to human SKOR2 (SKI family transcriptional corepressor 2).

NR:

description
PREDICTED: SKI family transcriptional corepressor 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780835.1 True 4542 mRNA 0.48 9 13444706 13457895

Neighbor

gene id symbol gene type direction distance location
hdhd2 hdhd2 coding downstream 4998 13431609 ~ 13439708 (-)
galt galt,LOC102780609 coding downstream 57732 13355188 ~ 13386974 (-)
si:busm1-57f23.1 NA coding downstream 946754 12490251 ~ 12497952 (-)
musk musk coding downstream 977541 12422834 ~ 12467165 (-)
stbd1 NA coding downstream 1125911 12312236 ~ 12318795 (-)
LOC120545744 hspb9 coding upstream 155385 13613280 ~ 13614293 (-)
LOC120545595 epha5,LOC102777475,LOC102204755,LOC102304993 coding upstream 174206 13632101 ~ 13706928 (-)
plppr1 plppr1 coding upstream 501407 13959302 ~ 14020451 (-)
snx30 snx30 coding upstream 703767 14161662 ~ 14179566 (-)
LOC120545561 NA coding upstream 731770 14189665 ~ 14197516 (-)
G174546 NA non-coding downstream 16623 13427855 ~ 13428083 (-)
G174537 NA non-coding downstream 52772 13390053 ~ 13391934 (-)
G174536 NA non-coding downstream 54736 13389585 ~ 13389970 (-)
G174512 NA non-coding downstream 167638 13271456 ~ 13277068 (-)
LOC120546049 NA non-coding downstream 310694 13117480 ~ 13134012 (-)
G174563 NA non-coding upstream 123495 13581390 ~ 13582508 (-)
G174565 NA non-coding upstream 139205 13597100 ~ 13597358 (-)
G174568 NA non-coding upstream 141457 13599352 ~ 13599635 (-)
G174592 NA non-coding upstream 396420 13854315 ~ 13854727 (-)
G174590 NA non-coding upstream 402057 13859952 ~ 13863997 (-)
ier3ip1 ier3ip1,LOC106633120,LOC102779563,LOC104954869 other downstream 627 13441280 ~ 13444079 (-)
cntfr cntfr,LOC108232720,LOC103473535 other downstream 526146 12646286 ~ 12918560 (-)
tmem267 tmem267 other downstream 807212 12631225 ~ 12637494 (-)
G174442 lpar1 other downstream 1053222 12390555 ~ 12391484 (-)
G174439 NA other downstream 1086816 12356928 ~ 12357890 (-)
smad2 smad2,LOC102778427 other upstream 125722 13583617 ~ 13606140 (-)
G174799 dusp4,LOC103390320,LOC107396907,LOC107092021,LOC103473566,LOC102218109 other upstream 1022567 14480462 ~ 14483417 (-)
G174827 NA other upstream 1126804 14584699 ~ 14589020 (-)
G175000 arpc3 other upstream 2192842 15650737 ~ 15654486 (-)
LOC120545627 LOC102205042,LOC104934790,LOC102798225,LOC102289738,LOC100705220,LOC101481478 other upstream 2795952 16253847 ~ 16298146 (-)

Expression


Co-expression Network