LOC120545002


Basic Information

Item Value
gene id LOC120545002
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 5494230 ~ 5498387 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636612.1
AATCTCTCTTCCACTTCTGTGTCAGATGTCCTTGGACCAAGGAGTAGCATGTGTTTCTATCAAGGTGTAGCACATACACCAACAATGACTGATGTGTTGGCTGTAAAAGGTACAGTAGatctgtttgagaaaaaaatgagggaaaaacacttgttttgtatctaatcaattattaatgattaatagattgttggcattttaacttttggtaaaggaaaacacacatCCAGCCCTAGTCTGGAGAAGTGACGGTGGTTAAAAGTAACTAATACTCTgagtagtttttttattttttttacaaattgtacttttacttgagtatttctctaacaccagtacttttacttgtaacagagtaatattttagcaatgtaacagtacttgtacttgagtacagaTTTTCAGTACTCTTTCCGCCTGTTATGCACACAACACCTAATTAGGCTCATTCATAATGAAGCCAGCGGAGCAGTTAACGTTTGTTAATTCTCTCAATTTAcgtattttactgtatttaattgttatttggtcaGGCAGTTCTTAGGACATCTATAAGGGGCCTGTATGCAAAGGCCTTGTTTCGCGCTCAAAACGTTAGCAGTCCATTCGGAAAGCACTGCTGCTAGCTGTGACTTCAAGGAGAACTTCTATcagacattcacaaattgagGTGCACTGAAGAGTAATGCAATGACTCAAAATGTGAAGTGGAAATGGCGCTGTTGAAGTGGTTTACCGGCGCACGTGACCGTGGAGGGGAGAGGGCTGCAAGAGcccaaagagaaaaaggagcgTCCACCACACAGACGCTGAAAAGACTCTTGCCATCCCATTCCCTTTGAACTCCGTTCCACTTTTTCAAAGAGGCTTTTGCCATCTGCTGCCTGACCACGCCCACCTCACCTGTTGCCTATAAATTGATTGTGAACCCTTTGGCTCATTCTTTGCCGGCACTCCAATGCAACCTGTGTGAGTCTTCAGGAGTTAACCACACAGTAATTGCAATGAATCCACATCACTCTGAATGATAAATAAAATACCACTGGTGCTGCCTTGAACCCTGCCTTCTCCCTGTTTCATTCCTCACTCCATACCACCTGATGTCTTCTGACCGAGACTGTTTGCTCACCACACCTTCACTCCACCTGAACCATTGCCATCACCTTACAGTTCCTTCAGACGCCAtgagtgtattttgtattaatgtattttttggagaggtgattttattaaaacattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636612.1 True 1240 lncRNA 0.41 3 5494230 5498387

Neighbor

gene id symbol gene type direction distance location
pam pam coding downstream 180797 5177157 ~ 5313433 (-)
derl2 derl2 coding downstream 368793 5100579 ~ 5125437 (-)
LOC120545498 smarcb1b,LOC104928041,LOC103358289,LOC106535110,LOC100704669,LOC101070741 coding downstream 394166 5043560 ~ 5100064 (-)
ppp6c ppp6c,LOC102313764,LOC102783418,LOC100701794,LOC104928043,LOC103372694,LOC101475652,LOC108228845 coding downstream 482920 5002320 ~ 5011310 (-)
scai scai coding downstream 496273 4909583 ~ 4997957 (-)
LOC120545938 LOC101480421,LOC106530361 coding upstream 33998 5532385 ~ 5557976 (-)
LOC120545046 LOC101480421 coding upstream 67652 5566039 ~ 5573779 (-)
ccni ccni,LOC106529109,LOC106925549,LOC106963610 coding upstream 360586 5858973 ~ 5885428 (-)
LOC120545631 NA coding upstream 402065 5900452 ~ 5906700 (-)
LOC120545633 NA coding upstream 408972 5907359 ~ 5919472 (-)
G173112 NA non-coding downstream 28984 5462651 ~ 5465246 (-)
G173104 NA non-coding downstream 52024 5434217 ~ 5442206 (-)
G173093 NA non-coding downstream 113493 5378877 ~ 5380737 (-)
G173055 NA non-coding downstream 132004 5361595 ~ 5362226 (-)
G173050 NA non-coding downstream 140167 5353702 ~ 5354063 (-)
G173131 NA non-coding upstream 25136 5523523 ~ 5523760 (-)
G173136 NA non-coding upstream 87709 5586096 ~ 5586533 (-)
G173165 NA non-coding upstream 183050 5681437 ~ 5681934 (-)
G173191 NA non-coding upstream 340842 5839229 ~ 5842878 (-)
G173192 NA non-coding upstream 348560 5846947 ~ 5849235 (-)
LOC120545230 NA other downstream 93552 5396633 ~ 5400678 (-)
odf2a LOC103374699 other downstream 596873 4846279 ~ 4897357 (-)
G172920 NA other downstream 722927 4770817 ~ 4771303 (-)
dpm2 dpm2 other downstream 934462 4552871 ~ 4559768 (-)
cdk9 cdk9 other downstream 1346417 4139166 ~ 4147813 (-)
LOC120544971 NA other upstream 869920 6368307 ~ 6374489 (-)
LOC120546140 NA other upstream 1322425 6820812 ~ 6820866 (-)
G173470 LOC103389048,LOC105418623 other upstream 1654483 7152870 ~ 7160087 (-)
G173727 LOC107687935 other upstream 2859336 8357723 ~ 8358027 (-)
LOC120545754 zfand5,LOC102789640,LOC104922891,LOC103362637,LOC102194010,LOC102308986 other upstream 3127095 8625482 ~ 8634067 (-)

Expression


Co-expression Network