LOC120545780


Basic Information

Item Value
gene id LOC120545780
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22537950 ~ 22540359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636742.1
GACGGGGAGGAGACAGCTCTCATTTCATTTCACCCTATCACTTCATCACTATCTGCAAGCTTTGGTGAAGGACTTGTAGAATACCCCAATATTCTTGAGCACCACAAAATATACCTAATGATAGTGATATGCGACCACTATCTTTAGCCatgaaacatttaaatgtatgtagttgtttttttttaagagtttttaTTATAAAGGTTACTTATCCTTTATTTAATTGTACAGTCAATCAGCAACGGGAAATGAGGGATGACATTCCTCCAGAGATTTTAAACTGGATGTTGTGGTTACTTGCTGCATCTTCTACCTTCTACCTTGGGCTTAGTGGTCTATCATTTTGTTTGCCACCTGTCatcctctttgacagtgataaGCATTATTAAATAAACACCTACTCTACACCTACTGTACCTGCCTAACACTGGGCTACATGATTGACAAAGAGATCTAAAGTGTGAAAGGGGGGCCCAGCTACCACTCAACAATATATAGGGTTTGCTGTGCTGGCTCCACAATGGTGGAAGGAGCTCCCACATCAGGACAGCAGAAACCCTACACATCTTCCGTCGCACTCACCTGTTCAGACTGCATCTTGGCCAattaaaagatatataacagtTTTTGCTTATTTGAGGGATTGTATGTACTTGCATGATTCTTGCTATTTTTGGGTGGTATCTTCATGATTGAATGCAATTATTGTCAGTCACTTTGAATAAAAGCATAATTTACATGAATAATGTAAATGGAATCCTATAATGTACTATTAGGAAATTGTTAATGGCATAGTGTACTATGACTTATGTACTATGGCttaagtattgtgatgatacTGGGttttagtttcctgttttattttgaaggttaaCTCCTTGTGTGTCATGTCTGgctttacttcctgccttgtgggTTTTTGTAAAGTCTGttccctgttttatttttaaggtTAACTCCTCATGTGCCTGCTCTGCCCTCATTTATTCCACCTGTGTTTATTTAGCATTGTGTATTTGATCCCCGGCCTCATTGTAAGTTCGTCTTCCTTGATGTTTGGAGATTTTGTAAGCTAGATGTTCCTGCCTGTTTTGTAGCCTTTTGATTATTAAATTGTTTGACCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636742.1 True 1126 lncRNA 0.38 2 22537950 22540359

Neighbor

gene id symbol gene type direction distance location
nedd4l nedd4l,LOC107584553 coding upstream 66402 22423582 ~ 22471548 (+)
dnajc21 dnajc21 coding upstream 153328 22377113 ~ 22384622 (+)
rad1 rad1 coding upstream 165159 22369167 ~ 22372791 (+)
ctif ctif coding upstream 310066 22168378 ~ 22227884 (+)
shc3 shc3,LOC102305817 coding upstream 450969 22056040 ~ 22086981 (+)
esm1 esm1,LOC102788147 coding downstream 271759 22812118 ~ 22814146 (+)
arhgap24 arhgap24,LOC102789489 coding downstream 283941 22824300 ~ 22892523 (+)
ptpn13 ptpn13 coding downstream 396345 22936704 ~ 22984920 (+)
LOC120545187 NA coding downstream 444845 22985204 ~ 22989316 (+)
sdad1 sdad1 coding downstream 449795 22990154 ~ 22996841 (+)
LOC120546009 NA non-coding upstream 60235 22474365 ~ 22477715 (+)
G176810 NA non-coding upstream 135886 22400570 ~ 22402064 (+)
G176809 NA non-coding upstream 137622 22399609 ~ 22400328 (+)
G176808 agxt2,LOC104961017,LOC104961016,LOC103368456 non-coding upstream 138377 22396101 ~ 22399573 (+)
G176805 NA non-coding upstream 147263 22390264 ~ 22390687 (+)
G176890 lman1 non-coding downstream 18312 22558671 ~ 22560599 (+)
G176898 NA non-coding downstream 104677 22645036 ~ 22646108 (+)
G176899 hcn1,LOC100711592,LOC102787639 non-coding downstream 105883 22646242 ~ 22648263 (+)
G176900 NA non-coding downstream 108722 22649081 ~ 22649318 (+)
G176901 NA non-coding downstream 109026 22649385 ~ 22649840 (+)
G176870 cplx4 other upstream 613 22531908 ~ 22537337 (+)
LOC120545252 NA other upstream 13545 22496413 ~ 22524405 (+)
G176753 NA other upstream 255787 22278880 ~ 22282163 (+)
G176526 NA other upstream 1590895 20946684 ~ 20947055 (+)
pappaa pappa other upstream 1917164 20515347 ~ 20620786 (+)
klhl8 klhl8 other downstream 457894 22998253 ~ 23008834 (+)
G177094 NA other downstream 642314 23182673 ~ 23184262 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other downstream 900624 23440983 ~ 23458605 (+)
rpl37 rpl37 other downstream 1183119 23723478 ~ 23727242 (+)
LOC120546142 NA other downstream 1183807 23724166 ~ 23724245 (+)

Expression


Co-expression Network