LOC120546000


Basic Information

Item Value
gene id LOC120546000
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19590742 ~ 19593712 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636770.1
TGGTAATCCACAGCTCCCAAGGTAACCTGCTTCCTTGAATAGATCCCTGGAATACCCCACGCCCTCTACACCAACTTCCTTTGGGGAAGAGGCTAAAAATGCTGTTGCACTGCTGGAAAAGGATTTGGATATTTGCATCATTGGACGATCGTGAGGATGATGGATGTGTATAAAGCAACCACAAAGTTCTTGAAGGGAATGGAGGACCTGGAAATGTGACATCAATTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636770.1 True 231 lncRNA 0.45 3 19590742 19593712

Neighbor

gene id symbol gene type direction distance location
ddx54 NA coding upstream 65418 19516810 ~ 19525324 (+)
trnac-gca_32 NA coding upstream 73436 19517235 ~ 19517306 (+)
abl1 abl1 coding upstream 104636 19449563 ~ 19486106 (+)
exosc2 exosc2 coding upstream 143143 19441576 ~ 19447599 (+)
mlana mlana coding upstream 268503 19318972 ~ 19322239 (+)
lman2la lman2l,LOC108231067 coding downstream 300404 19894116 ~ 19900260 (+)
pax8 pax8,LOC102780591 coding downstream 335859 19929571 ~ 19943843 (+)
LOC120545547 LOC103368295 coding downstream 370059 19963771 ~ 19970112 (+)
bspry bspry,LOC100703027,LOC102783296 coding downstream 427245 20020957 ~ 20028430 (+)
traf2b traf2 coding downstream 444152 20037864 ~ 20050223 (+)
G176226 LOC103367784 non-coding upstream 23573 19566939 ~ 19567169 (+)
G176225 LOC104956387,LOC101069739 non-coding upstream 24823 19563246 ~ 19565919 (+)
G176177 NA non-coding upstream 88558 19496036 ~ 19502184 (+)
G176173 LOC104959907,LOC106527788,LOC107745368,LOC106563285 non-coding upstream 98660 19488310 ~ 19492082 (+)
G175973 NA non-coding upstream 736194 18851078 ~ 18854548 (+)
LOC120545999 NA non-coding downstream 15959 19609671 ~ 19661055 (+)
G176240 NA non-coding downstream 100394 19694106 ~ 19694338 (+)
G176243 NA non-coding downstream 104132 19697844 ~ 19698070 (+)
G176281 LOC103390185 non-coding downstream 207271 19800983 ~ 19801199 (+)
G176282 med13l,LOC103390185 non-coding downstream 208528 19802240 ~ 19802531 (+)
LOC120545529 ermp1,LOC102800265 other upstream 188363 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 866957 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 933123 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 939673 18635026 ~ 18651069 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other upstream 1042601 18536631 ~ 18548141 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other downstream 318124 19911836 ~ 19914680 (+)
pappaa pappa other downstream 921635 20515347 ~ 20620786 (+)
G176526 NA other downstream 1352972 20946684 ~ 20947055 (+)
G176753 NA other downstream 2685168 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 2902701 22496413 ~ 22524405 (+)

Expression


Co-expression Network