trnac-gca_32


Basic Information

Item Value
gene id trnac-gca_32
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19517235 ~ 19517306 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_963
GGGGGTatagctcagtggtagagcatttGACTGCAGATCAAGAGGTCTCCGGTTCAAATCCGGATGCCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_963 True 72 tRNA 0.54 1 19517235 19517306

Neighbor

gene id symbol gene type direction distance location
abl1 abl1 coding upstream 31129 19449563 ~ 19486106 (+)
exosc2 exosc2 coding upstream 69636 19441576 ~ 19447599 (+)
mlana mlana coding upstream 194996 19318972 ~ 19322239 (+)
LOC120545863 NA coding upstream 242602 19273397 ~ 19274633 (+)
rfx3 rfx3 coding upstream 303770 19195656 ~ 19213465 (+)
lman2la lman2l,LOC108231067 coding downstream 376810 19894116 ~ 19900260 (+)
pax8 pax8,LOC102780591 coding downstream 412265 19929571 ~ 19943843 (+)
LOC120545547 LOC103368295 coding downstream 446465 19963771 ~ 19970112 (+)
bspry bspry,LOC100703027,LOC102783296 coding downstream 503651 20020957 ~ 20028430 (+)
traf2b traf2 coding downstream 520558 20037864 ~ 20050223 (+)
G176177 NA non-coding upstream 15051 19496036 ~ 19502184 (+)
G176173 LOC104959907,LOC106527788,LOC107745368,LOC106563285 non-coding upstream 25153 19488310 ~ 19492082 (+)
G175973 NA non-coding upstream 662687 18851078 ~ 18854548 (+)
G175974 NA non-coding upstream 680481 18836175 ~ 18836754 (+)
G175925 LOC103360647,LOC104958910,LOC102220109 non-coding upstream 843270 18670383 ~ 18673965 (+)
G176225 LOC104956387,LOC101069739 non-coding downstream 45940 19563246 ~ 19565919 (+)
G176226 LOC103367784 non-coding downstream 49633 19566939 ~ 19567169 (+)
LOC120546000 NA non-coding downstream 73436 19590742 ~ 19593712 (+)
LOC120545999 NA non-coding downstream 92365 19609671 ~ 19661055 (+)
G176240 NA non-coding downstream 176800 19694106 ~ 19694338 (+)
LOC120545529 ermp1,LOC102800265 other upstream 114856 19380250 ~ 19402379 (+)
srsf9 srsf9,LOC104958899,LOC100707309 other upstream 793450 18676021 ~ 18723785 (+)
LOC120545610 NA other upstream 859616 18656524 ~ 18657619 (+)
cabp7b cabp7,LOC104925332 other upstream 866166 18635026 ~ 18651069 (+)
myo1hb LOC103374943,LOC101465300,LOC102786650 other upstream 969094 18536631 ~ 18548141 (+)
LOC120545241 LOC105930800,LOC102780299,LOC103149678,LOC107095870,LOC100701678 other downstream 394530 19911836 ~ 19914680 (+)
pappaa pappa other downstream 998041 20515347 ~ 20620786 (+)
G176526 NA other downstream 1429378 20946684 ~ 20947055 (+)
G176753 NA other downstream 2761574 22278880 ~ 22282163 (+)
LOC120545252 NA other downstream 2979107 22496413 ~ 22524405 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnac-gca-6 NA coding NC_048576.1 CM023230.2 69109072 ~ 69109143 (+)
striped catfish (Pangasianodon hypophthalmus) trnac-gca_5 NA non-coding NC_047603.1 CM018549.1 3254552 ~ 3254623 (+)
mexican tetra (Astyanax mexicanus) trnac-gca_5 NA coding NC_035898.1 CM008301.1 4395893 ~ 4395964 (-)