smim8 (smim8)


Basic Information

Item Value
gene id smim8
gene name smim8
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 4745773 ~ 4803492 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU246980
TTCTTTGACTTTGAAACATGGCTGCGTTTAGAGAGACCTAGGTAACGCCTGCGATGTTAATTCTTCGAGCTTTGTAGTCGTATATTTCTTCAAAGAGCGGTCGTCCATACGTTTGACCGGACATGGCCGATAAAGATGTCGGTAAAGGGAAGGACAGCGCCGGGGAAAAAGGATACAGGACCCCCGGCCTGAGGAGCGCACAGACAACGACTCTGTTCCGAGTTGTCAACCCTGAACTCTTCATAAAACCTAATAAACCAGTGATGGCGTTTGGACTGGTGACCATCACCTTGTGTGTGGGCTACCTGGGCTATATGCACGCAATGAAAGAAAACGACCAGCAGCTATATGAGGCCGTCGACAGCGAAGGAGAAAGATACATGAGGAGGAAGACTTCCAAATGGGACTGATGGCACAACATGTTcgataactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaggacaGAGTGAATTAAAGCCTGACTGGTCTGAAACAAGGACACCTGTCAGCTTTTCTCCAAATGCTTCTATTAAACTTCTCTAATCTGTAAATACAACTACACTTCCACACAATAAGATAACTCTGTGCAAAATTAAAGGCAGCAGACATGATGTTCACTGttgcaacgttttttttttttggactgaGCAGACAAAGATGTTACCTTGAGCTCTAGGAACTTGTGATGGGgattttaataaatgacattttgatagaGAATTCCCAGCATGGCTCTAAACCAACTTTATCCTGAGGTCCAATTAGATCAATTAAGAGTCAGTTACACCACTATGTGTGGGCCTGCAGGACCTTTAACTTTACATGACTGCCTAGaagacactaaaaaaaaaaacacacttctaAAATCCAAAAACACTACTTGGCTCATGGTAAACAGTGTAAGTATCCAGTGCTGAAACATGATATGGTAAACATGGTCCTAAATAAATTTCATAATCCAAATTTCTATAATGAAAATGAAttccaacaaaaataaaaatcaatgtcATGTGTGATATCacttcatattaatgtttttgtttgttccaATTTATATATTGTTTCTGAATTCATACATACGATGATTCACTTCACAATGGATTTGTTAATGTCTATATACGGTAATGGCATTAGCTCCTTTTTATGTGTTGGGTTATTAACATAGGAACTGGTACTGTAGAGCTGAAATCAACAGcttcaccacacacagacattttatgttttattaaacAACATAAATAATTCCAAGTACAGCTGAAAAGAAATGCAATGTTGTCTTTATGAGGCACAGATGTCAGCTCGGAGGAGAATGTCACTGTTGCTCCATTATTTGGCTCTCTCATC
>TU246981
TTCTTTGACTTTGAAACATGGCTGCGTTTAGAGAGACCTAGGTAACGCCTGCGATGTTAATTCTTCGAGCTTTGTAGTCGTATATTTCTTCAAAGAGCGGTCGTCCATACGTTTGACCGGACATGGCCGATAAAGATGTCGGTAAAGGGAAGGACAGCGCCGGGGAAAAAGGATACAGGACCCCCGGCCTGAGGAGCGCACAGACAACGACTCTGTTCCGAGTTGTCAACCCTGAACTCTTCATAAAACCTAATAAACCAGTGATGGCGTTTGGACTGGTGACCATCACCTTGTGTGTGGGCTACCTGGGCTATATGCACGCAATGAAAGAAAACGACCAGCAGCTATATGAGGCCGTCGACAGCGAAGGAGAAAGATACATGAGGAGGAAGACTTCCAAATGGGACTGATGGCACAACATGTTcgataactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaggacaGAGTGAATTAAAGCCTGACTGGTCTGAAACAAGGACACCTGTCAGCTTTTCTCCAAATGCTTCTATTAAACTTCTCTAATCTGTAAATACAACTACACTTCCACACAATAAGATAACTCTGTGCAAAATTAAAGGCAGCAGACATGATaaaaaaaaaaaaaa
>TU246982
TTCTTTGACTTTGAAACATGGCTGCGTTTAGAGAGACCTAGGTAACGCCTGCGATGTTAATTCTTCGAGCTTTGTAGTCGTATATTTCTTCAAAGAGCGGTCGTCCATACGTTTGACCGGACATGGCCGATAAAGATGTCGGTAAAGGGAAGGACAGCGCCGGGGAAAAAGGATACAGGACCCCCGGCCTGAGGAGCGCACAGACAACGACTCTGTTCCGAGTTGTCAACCCTGAACTCTTCATAAAACCTAATAAACCAGTGATGGCGTTTGGACTGGTGACCATCACCTTGTGTGTGGGCTACCTGGGCTATATGCACGCAATGAAAGAAAACGACCAGCAGCTATATGAGGCCGTCGACAGCGAAGGAGAAAGATACATGAGGAGGAAGACTTCCAAATGGGACTGATGGCACAACATGTTcgataactgtgtgtgtgtgtgtgtgttgtaaggacaGAGTGAATTAAAGCCTGACTGGTCTGAAACAAGGACACCTGTCAGCTTTTCTCCAAATGCTTCTATTAAACTTCTCTAATCTGTAAATACAACTACACTTCCACACAATAAGATAACTCTGTGCAAAATTAAAGGCAGCAGACATGATGTTCACTGttgcaatgttgttgtttttt
>XM_039782486.1
CTTCTTCAAACATATCGCAGTCTTCTTTGACTTTGAAACATGGCTGCGTTTAGAGAGACCTAGGTAACGCCTGCGATGTTAATTCTTCGAGCTTTGTAGTCGTATATTTCTTCAAAGAGCGGTCGTCCATACGTTTGACCGGACATGGCCGATAAAGATGTCGGTAAAGGGAAGGACAGCGCCGGGGAAAAAGGATACAGGACCCCCGGCCTGAGGAGCGCACAGACAACGACTCTGTTCCGAGTTGTCAACCCTGAACTCTTCATAAAACCTAATAAACCAGTGATGGCGTTTGGACTGGTGACCATCACCTTGTGTGTGGGCTACCTGGGCTATATGCACGCAATGAAAGAAAACGACCAGCAGCTATATGAGGCCGTCGACAGCGAAGGAGAAAGATACATGAGGAGGAAGACTTCCAAATGGGACTGATGGCACAACATGTTcgataactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaggacaGAGTGAATTAAAGCCTGACTGGTCTGAAACAAGGACACCTGTCAGCTTTTCTCCAAATGCTTCTATTAAACTTCTCTAATCTGTAAATACAACTACACTTCCACACAATAAGATAACTCTGTGCAAAATTAAAGGCAGCAGACATGATGTTCACTGtt

Function

symbol description
smim8 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM8 (small integral membrane protein 8).

NR:

description
PREDICTED: small integral membrane protein 8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246980 True 1477 TUCP 0.40 2 4800911 4803470
TU246981 False 759 TUCP 0.46 3 4798921 4803470
TU246982 False 636 TUCP 0.45 4 4745773 4803470
XM_039782486.1 False 777 mRNA 0.46 2 4801633 4803492

Neighbor

gene id symbol gene type direction distance location
rad51 rad51 coding downstream 4128 4731388 ~ 4741645 (-)
si:ch211-241j12.4 LOC103354013 coding downstream 43049 4685533 ~ 4702724 (-)
LOC120547250 LOC104919706,LOC106571281 coding downstream 64203 4655856 ~ 4681570 (-)
cfap206 cfap206,LOC104962646,LOC104951787 coding downstream 90834 4634543 ~ 4654939 (-)
LOC120547180 NA coding downstream 260294 4480829 ~ 4485479 (-)
znf292b NA coding upstream 15655 4819147 ~ 4853083 (-)
LOC120546227 htr1e coding upstream 67650 4871142 ~ 4914191 (-)
LOC120546193 NA coding upstream 311687 5115179 ~ 5123781 (-)
LOC120547277 NA coding upstream 444453 5247945 ~ 5253700 (-)
LOC120547345 NA coding upstream 455973 5259465 ~ 5279720 (-)
G182276 rmdn3 non-coding downstream 24004 4719917 ~ 4721769 (-)
G182202 NA non-coding downstream 154769 4590793 ~ 4591004 (-)
LOC120546262 NA non-coding downstream 191285 4546168 ~ 4554488 (-)
G182182 NA non-coding downstream 216715 4528016 ~ 4529058 (-)
G182156 NA non-coding downstream 341506 4404025 ~ 4404267 (-)
G182302 NA non-coding upstream 5586 4809078 ~ 4809580 (-)
G182317 NA non-coding upstream 15207 4818699 ~ 4818962 (-)
G182325 NA non-coding upstream 110992 4914484 ~ 4914701 (-)
G182329 NA non-coding upstream 172072 4975564 ~ 4975936 (-)
G182348 NA non-coding upstream 296696 5100188 ~ 5100452 (-)
G182121 NA other downstream 579777 4163358 ~ 4165996 (-)
trnav-aac_21 NA other downstream 589941 4155760 ~ 4155832 (-)
trnav-aac_20 NA other downstream 596795 4148907 ~ 4148978 (-)
G182102 NA other downstream 645293 4100010 ~ 4100480 (-)
G182059 NA other downstream 831758 3908547 ~ 3914015 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other upstream 508014 5311506 ~ 5313715 (-)
G182474 NA other upstream 986797 5790289 ~ 5792938 (-)
G182502 NA other upstream 1107820 5911312 ~ 5911909 (-)
cgrrf1 NA other upstream 1429250 6232742 ~ 6269143 (-)
G182764 NA other upstream 1896999 6700491 ~ 6701117 (-)

Expression


Co-expression Network