XLOC_004916 (abca5)


Basic Information

Item Value
gene id XLOC_004916
gene name abca5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 38807604 ~ 38856048 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009661
ctcttctgtttttatttatttcccaaaGGTTTTTTATTTGGAAACAACAACGCAAATCTGGAGGACAGGAAAGACATGTCTTAATGTATTTCATACCGGTGTCTGATCCATGTGGCAGTCAGCTGAAGCATGCTGGAAGAATGCAGCCCTTAACCAGAAGAGATGCCGGAGTCTGGCATCAGACGAGGAGCCTGCTCTACAAAAACCTGCTGATCAAATGGAGGACCAAACAACAGAGTCTCCAGGAGCTGATCTTGCCTTTGCTCCTCCTGGGTCTCCTCATCCTCATCAGCACCCTCAACCCTCATGTCTCCTACGGCAGCATCAGCACCAAGGAACTGGAGTTTGAGCGGGAACTGCCAGTCAAAGGTCTGGGTTACACCCCCATCACCAATTTCACCAATCACATCATGGAAGAGGTGGCACGCGAACTGTCTATGAATGAGCATTTAGACATGTTCTCCACCGAGGCTGATTTGGAGAATGCCAGCCTCTATGAACCTGAGGGCTACGTTGGAGTGGTCTTTTTGGATTCGATGTCATATCGTCTGCGATTCCCGTACAGCCAGCTTCCTCTACCTAGTGACTTCACCGAGTCCATAACAAGCTGTTACACCAACTATGTCAACTGCCGTGCCGCCAACTACTGGTATTCTGGATTCATACGACTACAGTCTGTCATTGATGCTGCCATTATACAGATGAAGACCAAACGTCCGGTGTGGAATGAATTAAAAGTGCGAGCAGTGATGATGGGACATCCAGGTTCAGTGGAGGTTCAGAAGTTCCCTCATGCTCTGATCTCCATCTACTTAGTGCTGGCCTTCACACCCTTCGTTTCCTTCCTCATTGTTAATGTGGCAGCTGAAAAAGAGCAGCGTCTCAAAGACACCATGGGCATGATGGGATTGTACGACTCTGCCTTTTGGCTTTCATGGGGCCTTCTCTATGCCGCCCTAGTGACTACCATGTCCATTCTGATGGCTGTTATTGCGACCTGCACGCCTCTGTTCTCCAACAGCAATTTCTTTGTCATCTTCCTCCTCATTTTCCTCTATGGAATATCCTCGATTTTCTTCTCCTTCATGTTGACCCCGTTGTTTAAGAAGCCCAAGTTTGCCAGTACGGTGGGCTCGATGCTGACGGTGGTGTTTGGCTGTCTGTCGCTCTTTACTGTGTTGATGAGAGATTTCCCTCAGTCTGCTGTGTGGCTCCTCTGCCTTCTGTCCCCCAGCGCTTTTTCTATCGGCATCGCCCAggtAGTGTATCTGGAAGCTCAAGGGGATGGCGCAGTGTTCTCATCTCTGGGCAATGGTCCTCACGCTCTCTATGTTCCACTGGTCATGCTGTTTTTGGACTGCATCCTCTACCTGCTTTTAGCCATTTACCTGGACCAAGTGCTACCAGGCGAGTTTGGCACAAAACGCTCAGTGTTGTATTTTCTAAAACCATCCTATTGGTCCAAGCGGAGGAAGCGATATGTCGAGGTGAGCTCTGTGTATGAGGGCGAAGTAAACGGGACGCCTGCAATCGACGAATCGGTGGAGGCTGTTTCTCCTGAGTTCAGAGGCAAAGAGGTTATCAGGATTTGCAATATCCGAAAAATTTATCGGGAGAAGGATACCAAAGTGGAGGCTTTAAGAGGGTTGACCTTTGACATCTATGAGGGTCAAATCACAGCCCTGCTGGGTCACAGTGGAGCAGGAAAATCTACCCTGATGAACATCCTGTGTGGTATTTGCCCTCCTACGGAAGGCACAGCCACCATCTATGGCTCTCCAGTGGCAGAGATCGCAGAGGGGGCTGAGATGAAGCAGCTGGTTGGTATTTGCCCCCAGTTCAACATAATCTTTGATGTGCTCACCGTAGAGGAACACCTGAGGATCTTTGCCGCCATCAAAGGGATCCTGCCCTCTGATATTGACGGTGAGGTAAGGAAAGTTCTAAAGGATCTGGATTTGGAAAAGATTATGGATGCTCTGGCAAAAAACCTCAGTGGAGGCCAGAAGAGGAAGCTCTCTGTGGGCATAGCCATTCTTGGAGATCCCAAGATCCTCCTTTTGGATGAGCCTACAGCTGGTATGGACCCAGTGTCTCGGCACCAGGTTTGGTCTTTACTGAAGAGCCGTAGAGCAGGCAGAGTTACAGTTCTCAGCACTCACTATATGGATGAGGCTGATATACTTGCAGATCGTAAAGCTGTCATCTCGCAAGGACAGCTCAAGTGTGTTGGCTCTTCTTTGTACCTGAAGACCAAGTGTGGAGTTGGGTATCATCTTAGAATGTCAGTGACTGAAGGCTGTGAGGTGGAGGGCATCACGTCGCTGGTCAAGCAGCATGTTCCCAAAGCTCAGTTGTCAAGGCAGCAAGAGGCTGAGCTTACATTCACTCTGCCTTTCGAGAGCATGGACACCTTTCCAGGGCTGTTTGCGGAGCTGGACTGTCGACCAGACCTGGGTATCATTAACTACGGTGTCTCCATGACAACATTAGAGGATGTATTCTTGCGTCTGGAGGCGGAAGCAGAGGTGGATCAGGCTGACTACAGTGTCTTTAACCAGGAAAAAGTGGAAGAAGAGGGAGATGCGTCCTCTATGGATGACACAGACCAGAGGCTGCTGACGTTTTCAGACAGCAGACAGGACACAGTAACTGGTCATGCCCTCTGGAGGCAGCAGTTTAGCACAGTGGCCTGGCTGCACATGCTCAACctccagagagagagaaaacctaTTATATACAATTTGACGCTGTTCGTAGTTTTTTTGTCTGCGATGCTGATTCTCTCCGTGGCCACAGGAAACATTCAGATCCATTCTCCTGAAAGACTGTTTTCACCAATATACCTGCTGCGCCGCAATGAGGCTCCTCACAAATACACCACCAGCCTGCTCGTGCAAAACTCCACCGATTCTGACCTATCAGGGTTCATCCACAATCTGCAGTCTCAGGATATTAAAGTGGAAATGATGAAAAAACTGGACTACATGTCTGCAGCACCGGTCAGCGCCGCCATCAACGTGACTGGACCCAGTAAGGATTTTACCTACATTTTAGCGTTTAACAGCACCACTGTGCACTCTTTGCCCATGGCTGTGAATGTGCTCAGTAATGCTCTCCTGAGAGGTTATAATGGCACTGGACACATTAGAACATGGTCCAAACCCTTTGATTATcaAATTCCAGATAAAACATCTTATGCACTGGTTTACATTGAAGCTGTGATTCTTGGGATGCTGGCTGCTGGGATGCCAGCTTACTTCGCAATGGACCACACAAGAGACAGAGAACTGAAGTGTCGCTCAACGTTGAGGATCTCTGGTCTTGTTCCTTCTGCGTACTGGTGCGGTCAGGCAGCTATCGATGTCCCGTTCTATTATCTGATCTTAACCTGCATGACCAGCACCCTCTTTGCCTTCCATTCTACAAACCTGCTAACCTCTCATAACATCTTGTCTGTGGCTCTTTGTCTGATTGGCTTTTCTCCAGCCATGGTTCTCTTCACATACTGCGTGTCCTTCATGTTTGTCAGAGTCCAGAGCAATAGAGACTTCTTCTCTGTTGTCTCAATGATGGTGTGTGTGGTTTCTGCATCCATAGTCCAGCTGGCTCTTGTGAACGAAAGTGCATCTATGGCTCGTCTCCTCCACAATGCACTGTGTTTCTTCAGTCCACTCTACCCTCTAATGGGCTGCCTTAACTGCATTACTGTGGCTACCTTTGTTCAGTCTCCTCATGATGATGATTTTCTTTGGAAGAACCTCTTCATTTCTGTTGTGGCTCCATACATCCAGTGTATACTTCTGCTCGTCTCACTGAGATGGCTGGAGATCAGATATGGAGGGAAGACCATGAAAAATGACCAGCTCTGCAGAATTTCTTCCCAAGCAAAGAGCAAAGCTCAGCGGAACCCAGAGGAGAACATGAGTGAGGATGAAGACGTTCAGATGGAGAAAGCTCGAGTGAAAGAGGCCATgacctgtcagtgctgtgaggagaaACCAGTTGTGGTGGTGAGTAACCTCAGAAAACAGTACAAAGGCAAGAGGGAGGGCTTCTCGCTTAATAAGAAAAGGAAAGTGGCCACAAAGAACATCTCCTTCTGTGTTCGCAAAGGTGAGGTTTTAGGTCTGCTGGGTCCAAACGGAGCAGGGAAAAGCACAATCATGCACATGTTGTCTGGAGACACTGAAGCCACCGCTGGACAGATTCTGATGGGAGATTACGGCACAGACTTTCAGCCTGCGGAAAACCCCTTGGAGCATGTCGGGTATTGTCCTCAAGTGAACCCTCTGTGGCCCAGAATCACTCTGCAGGAGCACCTGGAGATCTATTCTGCCATCAAGGGGTTACGTCAGCGTGATATCCCCAACATCATCAAGCGTGTTGTGAGTGCTCTTGAGCTTAAGGATCATctttacaaacagtcaaaaaacttGTCTGCAGGGCTAAAGAGGAAGTTGTGCTTTGCACTAAGCATGCTGGGAAATCCTCAGATAGTTTTGTTGGATGAACCATCTACAGGGATGGATCCTAAATCAAAACAACGCATGTGGAGAGCAATCCGTGCTGCTTTTAAGAACAAACAGCGAGGGGCACTGTTGACCACCCATTACATGGAAGAGGCAGAGGCTGTGTGTGACCGTGTGGCGATCATGGTATCTGGTCAGCTGAGGTGTATTGGCTCAATCCAGCACCTGAAGGGGAAGTTTGGCCGAGGATACAGCCTAGAGATTAACCTCAGGGAGGAGCTCACAGGTCTCCAGCAGGTAGCGCTGTTGCACAAAGAGATACTGAAGATATTTCCCCATGCTGTTCGTCAGGACAGTTTTGCCACTATGATGGTGTATAAAATCCCAATGGAAGATGTGAAGTCTTTAGCCAAGTCTTTTGCCCAGTTAGAAAGTGCTAAACAGAACTTCAACTTTGAAGAGTACAACTTTTCCCAGTCAACTCTTGAACAAGTTTTCATGGAGTTTGCCAAGGAGCAGGAGAACGAGGAAGAAGAGGTCGGATCACTAAGCACGACTTTTCAATGGCAGAGACTGAGACAGGACGGCCCTGTATCTATTAATCACGCTGACAGCATAGTACACCAGCTATGAACCAATCCTGTTCCCTGAAGCGTTCTGCCCTTGCCTCTTTCTCCTTTTCCTTCGTTCTGCATGTGCCGTCTTTTGCCTTAAGAGCCTTAAACCCATGGGACTCACAGGACAATCGACTCCAGAGACTCCAATGGCCACTAACGCACACTAAtaacgtgtgtatgtgtgtgtgtgtttatgtggctCTGGCACTGGCACTTGCTCAGAAGGAATCAGACACACGACTTGAGTGTCATCCGTTAAACACAGAGCTAGACTCGTCGTCATCTGTTTTtacaacgacaaaaaaaaaaagattttattttttaaactctcaCTTCTACTTGTATCTATCAAGCTCACTGTTTTCTTGTGTCCATATAACACACGTCTATCACTGGGAAATGAATTTGCATGAAGCGGGTTCCACGTTATCAAAACAGTACCAAAGTTTTCACTCACATCGACaccaaactgcttttatttcgattttttttttggtgtctgTAGCATGGGATATAAACAAACtcgcatctgtctgtctgtctgtctgtgtatgcgtgtgtgtagaTATTGTTAATATCGATGGGTGTAATATACGTTTTCAGATAGGAGAATCTGATTTACTGTGTGCAGCATTAACACTGAGATTAACCAGCATGTAGGGGCTGCTCTCCGCTTCTCGTACTCTTCTGTTTCAGGACGGAGCGGCCCTGCCAGGTGCATGAAGCCTCTTCTGTCTCTGCTGCACTGGGAGATCCACACGACTCCTTTCTCAAACACCAGCACGCGTTTCAGGCTTTCACACACAGAGCTCTCCAAAGAAAAACAGGGCTAAAGCACTCACAGTGAGTAAGCCGATGGGTTGAAATCAAGACAATGAAGAACTATTTCTCTTTCATCCCGTTTTCTTTCTGTCTAGTCTGGTGGCCTTCCTTTAGGAGCAGTTTTAAAAATCAGTAGCTTAAGAATGTAGTTTTCACCGTTTCCAACCATGTAGCATTCTAGATTTGGTCACATACTGCTGAgtgagtgtgtttttgttttctttaatgaAGGTAAGAGTACTGTAGGAACCGTGAGCCTTGAATGTACAGTGGTGTTTAATGATGTTGCTTAGGTTTTTCGGGTGTACGTCTTCTCTTTTGGGAAGGCTTCTAAATGAGATGTTTGCATCCTGCTCCTTTTAAAGTCGTTGGTTCTTGTTTGAGAGGGTgcttttttatgtatattatggaatatatatgtttttggtttgtttttaatgtGAATTTGATTAAATGATCAcatcttattttttatgttagtCAAATTGTGGAATTGGTGTCTGTGTTGCACACTGGAGAGTATATTTCAGGAATTAAtcctttacaaatatatatttaaaat

Function

symbol description
abca5 Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in lipid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in basal plate midbrain region; mucus secreting cell; nervous system; pronephric duct; and pronephric mesoderm. Orthologous to several human genes including ABCA5 (ATP binding cassette subfamily A member 5).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006869 lipid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050517-5 Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in lipid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in basal plate midbrain region; mucus secreting cell; nervous system; pronephric duct; and pronephric mesoderm. Orthologous to several human genes including ABCA5 (ATP binding cassette subfamily A member 5).

Ensembl:

ensembl_id ENSDARG00000074041

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009661 True 6473 mRNA 0.47 39 38807604 38856048

Neighbor

gene id symbol gene type direction distance location
XLOC_004915 kif19 coding upstream 1894 38770654 ~ 38805710 (+)
XLOC_004914 dnai2b coding upstream 99747 38695808 ~ 38707857 (+)
XLOC_004913 ttyh2 coding upstream 119611 38563073 ~ 38687993 (+)
XLOC_004912 rpl38 coding upstream 245762 38556462 ~ 38561842 (+)
XLOC_004911 NA coding upstream 260329 38545828 ~ 38547275 (+)
XLOC_004917 si:ch211-39f2.3 coding downstream 22782 38878830 ~ 38913459 (+)
XLOC_004918 si:dkey-239b22.1 coding downstream 73615 38929663 ~ 38974869 (+)
XLOC_004919 si:ch73-181m17.1 coding downstream 127941 38983989 ~ 39031459 (+)
XLOC_004920 si:dkey-239b22.2 coding downstream 178177 39034225 ~ 39061186 (+)
XLOC_004921 si:dkeyp-106c3.2 coding downstream 347697 39203745 ~ 39205054 (+)
XLOC_004910 NA non-coding upstream 366278 38437785 ~ 38441326 (+)
XLOC_004909 NA non-coding upstream 496893 38206941 ~ 38310711 (+)
XLOC_004908 CT033802.1 non-coding upstream 1108887 37698602 ~ 37698717 (+)
XLOC_004907 NA non-coding upstream 1396398 37406688 ~ 37411206 (+)
XLOC_004922 NA non-coding downstream 397141 39253189 ~ 39255373 (+)
XLOC_004923 BX294100.3 non-coding downstream 574154 39430202 ~ 39430317 (+)
XLOC_004924 FQ311878.1 non-coding downstream 647516 39503564 ~ 39503678 (+)
XLOC_004926 CR847968.1 non-coding downstream 1349947 40205995 ~ 40518280 (+)
XLOC_004927 LO018394.1 non-coding downstream 1555518 40411566 ~ 40411682 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000136_01018880_01039109 ABCA5 coding CI01000136 null 1018880 ~ 1040424 (+)
bowfin (Amia calva) AMCG00013257 LOC106612075,LOC107560953 misc CM030125.1 CM030125.1 26367795 ~ 26396705 (+)