G182413


Basic Information

Item Value
gene id G182413
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 5386807 ~ 5388183 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU247143
tgggggttatggtgaataagctaaattcccaataagtcggcatttTCCTTTAAGTCATTAGTTATTAGGTATTAAATTATTTTGTAGTTTTAGACAGCAATTCTATGAGTAATAATAACACTGGACTCACCAAAGTCATTGTTGAAATCTGGAAACACAACCACATCACCATAATGAAGCAAGAAATGCGCAGCAGCCAGACCATCAGATAAATAGTTTGTCCACATTATTTACACCAACATTTTCCAACCCCTAAGACTACTGGACCACAGAACATTTGCTATCAGGCTGCAggcaaactaaactaaaacttgattaaaaagacacaaactgaGTAATGAGTAGtacttatatatatttatagccTGTCATGGGCTATTTAAGTTAACTTGAACTTGGGTCAGTCATTTCTGCAGTTTTCCTCATCACTCCCTGCCACACCACCAACAACATTATACTGATTCTGCACCAAAATAGGTCCTTGTTTTGTGAGGTAACAGTCCATCATCATAGCATATCACCATTAAGCAGGACATGAAATCTGTGTGAAGACACCTGAGTGTTGCTGAGAGGTGTATCTGTATTGTTTTAATTTAGTAAGTAACCACAATGCAATACAGACCACATTGGGGTGTCCTTGTAGATTATTGTAAAAATAGGACGACAGTGTCAATAAGCGCTATGTTTCCTTCGGACCAGAATTTCCCTATTACATACTACATTCATTTAGGGGATGGATCAGTCTCTTTAAAAGTACACAGGTCCAATCACTAAGTATACCAAGGTTGTAAGTTACTTACATCTTTCAAAAAGTCCCAGAAGTCACTTTGTACGGATACAAATTTTTCAAATGGTCACATTTTGGAAATGTGTTCTTCTTATACACCGGTCAATGTTCATAGAATTCCTATTAAACCATCTGCAGGAGATTAGGGTTTAATAAGGGTTTAATAAGTAAAAGTAAGAATGAACCTAATGAAAGTTAATTTTCCAGAAAGTTGTTATTAAACAACATGAAGTTGTTTGCTTTTATTGTCTGGTGTTGCATGTTTCTGCTGAACTGACCCATGAGACAGTTTAGTCCAGTGTATACACCCATGCTGTCATTTCTCACGTTTtgtgaatgatttttttttttgtggtattGCTGATATGACTGCGTGTGTAcagtgtctatatatatatatatattggattttttttttgtaccatACTTCAGTGGGATTATGTGTGGCAGTTGAACTTTACAGTAGAAGCGGAGGGGAGGAGCAGCAGCTCCACTGTTACAGTGCAACTGTGCACATTTTCTTACCTGGAGCTgtaaaaaatgtgttaaaatttgttgtttttgctactaagataaaactaaacatttcc

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU247143 True 1377 lncRNA 0.36 1 5386807 5388183

Neighbor

gene id symbol gene type direction distance location
LOC120547345 NA coding downstream 107087 5259465 ~ 5279720 (-)
LOC120547277 NA coding downstream 133107 5247945 ~ 5253700 (-)
LOC120546193 NA coding downstream 263026 5115179 ~ 5123781 (-)
LOC120546227 htr1e coding downstream 472616 4871142 ~ 4914191 (-)
znf292b NA coding downstream 533724 4819147 ~ 4853083 (-)
lrfn2b LOC103354004,LOC104943823 coding upstream 970 5389153 ~ 5588237 (-)
gopc gopc coding upstream 598254 5986437 ~ 6009440 (-)
LOC120546792 LOC104959018 coding upstream 682363 6070546 ~ 6073220 (-)
LOC120546794 NA coding upstream 1074757 6462940 ~ 6464802 (-)
meis2b LOC104938729,LOC103355645,LOC105017579 coding upstream 1374528 6762711 ~ 6800793 (-)
G182368 NA non-coding downstream 150599 5235833 ~ 5236208 (-)
G182367 NA non-coding downstream 160137 5226393 ~ 5226670 (-)
G182358 NA non-coding downstream 241087 5145512 ~ 5145720 (-)
G182356 NA non-coding downstream 260786 5125813 ~ 5126021 (-)
LOC120547022 NA non-coding downstream 273086 5112241 ~ 5113721 (-)
G182441 NA non-coding upstream 279534 5667717 ~ 5667916 (-)
G182443 NA non-coding upstream 308273 5696456 ~ 5696803 (-)
G182472 NA non-coding upstream 389069 5777252 ~ 5777743 (-)
G182501 NA non-coding upstream 522512 5910695 ~ 5911116 (-)
G182507 NA non-coding upstream 542480 5930663 ~ 5955950 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other downstream 73092 5311506 ~ 5313715 (-)
smim8 smim8 other downstream 583315 4745773 ~ 4803492 (-)
G182121 NA other downstream 1220811 4163358 ~ 4165996 (-)
trnav-aac_21 NA other downstream 1230975 4155760 ~ 4155832 (-)
trnav-aac_20 NA other downstream 1237829 4148907 ~ 4148978 (-)
G182474 NA other upstream 402106 5790289 ~ 5792938 (-)
G182502 NA other upstream 523129 5911312 ~ 5911909 (-)
cgrrf1 NA other upstream 844559 6232742 ~ 6269143 (-)
G182764 NA other upstream 1312308 6700491 ~ 6701117 (-)
G182952 NA other upstream 2373382 7761565 ~ 7766386 (-)

Expression


Co-expression Network