G182580 (psmc6)


Basic Information

Item Value
gene id G182580
gene name psmc6
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6169323 ~ 6188026 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU247348
tGAGTAagataatagaaaaaaaacaaaaaacagccaaAACTCAAGAAGTCTATCCTGCTGAATAATTGTTGCAGCTTTGTTGTACCTCTCTCAGCTCACGAATCTGTTCAGACAAGCCTCCAATTTCAGAGTAGGAGACGCTGCCAGGGTCCTCGTGGGACATGTTGTACACTAGAGGGTCCACCTCTCTGGGCAGCCTACCTCATTATAGTGAGTGTAGTCATGTCCAAAGCCACTCTGGTGCCTGGCTTCAGCTGTGACTTGTCCAACTGTCTGCGGCATCCAACCACATATCTGGGTCCGTTGGTGGCCTTGACAATGAATTTCTCCTCGGTCAGCTGTTTGAGCACTTCTCCAACAATCTGGCCAACACTTTGCAGGGCCTTTAGGTCATTTTCTGATTTCTCGTACTGTTTAGTTTGTTCTCTCAGCTGTTCTCTTAATTCTTTTAACCGCCCGTCAATTTCTTTGTGTTCGAGTAATTTTTTCCTGTAGTCTTGCAGCGCTTTCTCCCTGGTGTCCGCCATGATACTCCACTTCTAtttcgtcttcttcttctcctttttctttttggttcattggctgttggcaaaccaacttaaaggtgcattaccgccaccggGCGGCATGGGACGGgaggtctccaggctgcagctaTACACTATTGACTAGACTGGAGTGTG

Function

symbol description
psmc6 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Orthologous to human PSMC6 (proteasome 26S subunit, ATPase 6).

NR:

description
PREDICTED: 26S protease regulatory subunit 10B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247348 True 683 lncRNA 0.47 6 6169323 6188026

Neighbor

gene id symbol gene type direction distance location
LOC120546792 LOC104959018 coding downstream 96103 6070546 ~ 6073220 (-)
gopc gopc coding downstream 159883 5986437 ~ 6009440 (-)
lrfn2b LOC103354004,LOC104943823 coding downstream 581086 5389153 ~ 5588237 (-)
LOC120547345 NA coding downstream 889603 5259465 ~ 5279720 (-)
LOC120547277 NA coding downstream 915623 5247945 ~ 5253700 (-)
LOC120546794 NA coding upstream 274914 6462940 ~ 6464802 (-)
meis2b LOC104938729,LOC103355645,LOC105017579 coding upstream 574685 6762711 ~ 6800793 (-)
cnih3 cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542 coding upstream 1256835 7444861 ~ 7588065 (-)
LOC120546734 cd2ap coding upstream 2063690 8251716 ~ 8340747 (-)
LOC120546378 NA coding upstream 2361153 8549179 ~ 8550180 (-)
G182578 NA non-coding downstream 3899 6164762 ~ 6165424 (-)
G182577 NA non-coding downstream 4886 6164215 ~ 6164437 (-)
G182574 NA non-coding downstream 9465 6159565 ~ 6159858 (-)
G182567 NA non-coding downstream 40495 6128583 ~ 6128828 (-)
G182566 NA non-coding downstream 40788 6127605 ~ 6128535 (-)
G182694 LOC103355641,LOC104938520 non-coding upstream 95492 6283518 ~ 6284813 (-)
G182710 NA non-coding upstream 171435 6359461 ~ 6361479 (-)
G182711 NA non-coding upstream 184461 6372487 ~ 6373198 (-)
G182714 NA non-coding upstream 193182 6381208 ~ 6407923 (-)
G182741 NA non-coding upstream 390067 6578093 ~ 6593825 (-)
G182502 NA other downstream 257414 5911312 ~ 5911909 (-)
G182474 NA other downstream 376385 5790289 ~ 5792938 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other downstream 855608 5311506 ~ 5313715 (-)
smim8 smim8 other downstream 1365831 4745773 ~ 4803492 (-)
G182121 NA other downstream 2003327 4163358 ~ 4165996 (-)
cgrrf1 NA other upstream 44716 6232742 ~ 6269143 (-)
G182764 NA other upstream 512465 6700491 ~ 6701117 (-)
G182952 NA other upstream 1573539 7761565 ~ 7766386 (-)
G182977 NA other upstream 1836689 8024715 ~ 8025044 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other upstream 1861432 8049458 ~ 8126664 (-)

Expression


Co-expression Network