opn5 (opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775)


Basic Information

Item Value
gene id opn5
gene name opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8049458 ~ 8126664 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU247822
ttttcaaatgtttctaaAACTGAAATGGAAATTTAAGCAAAAGAATATACCTGACTTGAGCCATGTCAAAAACAGACTGAGGTGTAACTGTCAAGCTCAAAGTTGTATTTTTACTGTTTGTAAAAGCTGTTGTATTTTGTACCCCCTACACCTGTGACTTGTCTACAGCTGTGGCTTGTATACAgttgaaatatctcaaaaagCACTAAATCACACCAACTTAGTTTTTCATCAGCTGTAAAGTGCACATGAAGAGATTTTATGTGGCTGTATTCAGTGAAATTGTGCACTTTACTTACAAAGCCATTCAGCATTGATAAGTTTggtgttttacacacacacacacacacacacacacacacacacacacatacacacatatatggaATTGCTGAAAAGAAGAAGACA
>XM_039780983.1
CTGACTTGATGCTGCCGCTCCCCAGAGCGTCTCTGAGGTCTCAGAGGAGAAAGTTGAAGTTGACTCACAGGGATATTTTCACAAAACCTTTCTATACATTAACAGGACCGGAACTGACTGTTATCGGGGTTAAATGTAACAGAGGAAGTTTATTTATGGGAATTAAACTCCGCTCGGTATGACTGATGACCGATGGACAAAAGGATATTTCACACTCATGGCAGCGATGGAGAACGAGACGTGGCCCCACCATGCATACCTGCCCCATTATCTCCTGCGTGGTGACCCTTTCGCCTCAAGACTGTCCAGAGAGGCGGATATCATTGCAGCCTTTTACGTCTGTTTAATAGGAATCATGTCTGCAACAGGGAATGGCTATGTCATTTATATGACCATCAAACGCAAGACCAAGTTGAAGCCTCCTGAGCTCATGACTGTTAATCTAGCCATCTTCGACTTTGGCATATCAGTGACAGGAAAACCCTTTTTCATTGTGTCTAGTTTGTCCCACCGCTGGTTGTTCGGCTGGGAAGGTTGCCGCTTCTATGGCTGGGCAGGCTTCTTCTTTGGTTGTGGGAGCCTCATCACGATGACCGTGGTCAGTCTGGACCGGTACCTCAAGATCTGCCATCTCAGATACGGCACATGGCTTCAACGCCACCATGTCTTCCTGTGCCTGGTTTTTGTGTGGGTGTATGCAGCTTTCTGGGCCACCATGCCCCTGACTGGTTGGGGAAACTATGCCCCAGAGCCCTTCGGGACCTCCTGCACATTGGACTGGTGGCTGGCACAGGCCTCTGTGTCCGGCCAAAGCTTCGTCCTGGCCATTCTGTTCTTCTGTCTCATCCTTCCCACAGGCATCATCGTCTTCTCTTACGTCATGATTATCTTCAAAGTCAAGTCCTCTGCAAAGGAGATTTCAAACTTTGACGCCCGCATCAAAAACAGCCACAGCCTTGAGATAAAACTCACAAAGGTGGCAATGCTGATCTGTGCAGGCTTCTTGATAGCCTGGATCCCTTATGCAGTGGTGTCAGTGGTGTCAGCGTTTGGTGAACCGGACTCGGTGCCCATCCCTGTGTCTGTCATTCCCACGCTGCTGGCCAAGTCTTCAGCCATGTACAACCCCATCATCTACCAGGTGGTGAACCTGAGACGTTACTGCAGGATATCCTCCTGTTTCAAGGTCCTGAAGAAACGCAGGAATTTTAGAAAGTCAAGGTTCTACACCATCGCTGGCTCGTTAAAGGACAATCCATCAGCTAATGAAGCTGAAATCGAGATGTGACTGTGTCTAACTCTTCTACTTTGGACAGTATGCCTTGTTTCCTGCCCTCTGTGCCCTACACATACCCAATCACATGCTGCCTGTCACCTGTTATGGTATTATCTACAGCTCACCTTTGTTGCCGATGGCTCCTGAGTTCCGGCTTGTTTTTACACCCACGCCTCCCCTTACTCTGAAACACGTCTTTCCCAGAAGGTTTTGCTTATTCTGTGGAGTTGCGTTGTCTTGACCTTCTTGACTTAGTTTTTAAGTGTTACAGACACGCTGTCTTTCAATGCTATGTTACTGATTGACTCACCACGGTGTTGTTCTCATACGACGGCTCGACTGAGGTTTGAAAACGTGACACGTTTGCAAGAAATTCAAGTCAAATCTAAAGCCATAATGTTTTGTGAATCCAAATCTTACAGAAGCATAAAAAttgctataaaaatgtaaatatattttcaaatgtttctaaAACTGAAATGGAAATTTAAGCAAAAGAATATACCTGACTTGAGCCATGTCAAAAACAGACTGAGGTGTAACTGTCAAGCTCAAAGTTGTATTTTTACTGTTTGTAAAAGCTGTTGTATTTTGTACCCCCTACACCTGTGACTTGTCTACAGCTGTGGCTTGTATACAgttgaaatatctcaaaaagCACTAAATCACACCAACTTAGTTTTTCATCAGCTGTAAAGTGCACATGAAGAGATTTTATGTGGCTGTATTCAGTGAAATTGTGCACTTTACTTACAAAGCCATTCAGCATTGATAAGTTTggtgttttacacacacacacacacacacacacacacacacacacacatacacacatatatggaATTGCTGAAAAGAAGAAGACACACATTATTCATCCAATGAAACAACTCCAGAAGTTGTTTCTTTGAATGATTGAAATGTCATTCTTTAACTAACCAACTACCAAACCTACAGTTGTGGCCATGGTTACACTTATAGTTGAT
>XM_039780984.1
CTGACTTGATGCTGCCGCTCCCCAGAGCGTCTCTGAGGTCTCAGAGGAGAAAGTTGAAGTTGACTCACAGGGATATTTTCACAAAACCTTTCTATACATTAACAGGACCGGAACTGACTGTTATCGGGGTTAAATGTAACAGAGGAAGTTTATTTATGGGAATTAAACTCCGCTCGGTATGACTGATGACCGATGGACAAAAGGATATTTCACACTCATGGCAGCGATGGAGAACGAGACGTGGCCCCACCATGCATACCTGCCCCATTATCTCCTGCGTGGTGACCCTTTCGCCTCAAGACTGTCCAGAGAGGCGGATATCATTGCAGCCTTTTACGTCTGTTTAATAGTGACAGGAAAACCCTTTTTCATTGTGTCTAGTTTGTCCCACCGCTGGTTGTTCGGCTGGGAAGGTTGCCGCTTCTATGGCTGGGCAGGCTTCTTCTTTGGTTGTGGGAGCCTCATCACGATGACCGTGGTCAGTCTGGACCGGTACCTCAAGATCTGCCATCTCAGATACGGCACATGGCTTCAACGCCACCATGTCTTCCTGTGCCTGGTTTTTGTGTGGGTGTATGCAGCTTTCTGGGCCACCATGCCCCTGACTGGTTGGGGAAACTATGCCCCAGAGCCCTTCGGGACCTCCTGCACATTGGACTGGTGGCTGGCACAGGCCTCTGTGTCCGGCCAAAGCTTCGTCCTGGCCATTCTGTTCTTCTGTCTCATCCTTCCCACAGGCATCATCGTCTTCTCTTACGTCATGATTATCTTCAAAGTCAAGTCCTCTGCAAAGGAGATTTCAAACTTTGACGCCCGCATCAAAAACAGCCACAGCCTTGAGATAAAACTCACAAAGGTGGCAATGCTGATCTGTGCAGGCTTCTTGATAGCCTGGATCCCTTATGCAGTGGTGTCAGTGGTGTCAGCGTTTGGTGAACCGGACTCGGTGCCCATCCCTGTGTCTGTCATTCCCACGCTGCTGGCCAAGTCTTCAGCCATGTACAACCCCATCATCTACCAGGTGGTGAACCTGAGACGTTACTGCAGGATATCCTCCTGTTTCAAGGTCCTGAAGAAACGCAGGAATTTTAGAAAGTCAAGGTTCTACACCATCGCTGGCTCGTTAAAGGACAATCCATCAGCTAATGAAGCTGAAATCGAGATGTGACTGTGTCTAACTCTTCTACTTTGGACAGTATGCCTTGTTTCCTGCCCTCTGTGCCCTACACATACCCAATCACATGCTGCCTGTCACCTGTTATGGTATTATCTACAGCTCACCTTTGTTGCCGATGGCTCCTGAGTTCCGGCTTGTTTTTACACCCACGCCTCCCCTTACTCTGAAACACGTCTTTCCCAGAAGGTTTTGCTTATTCTGTGGAGTTGCGTTGTCTTGACCTTCTTGACTTAGTTTTTAAGTGTTACAGACACGCTGTCTTTCAATGCTATGTTACTGATTGACTCACCACGGTGTTGTTCTCATACGACGGCTCGACTGAGGTTTGAAAACGTGACACGTTTGCAAGAAATTCAAGTCAAATCTAAAGCCATAATGTTTTGTGAATCCAAATCTTACAGAAGCATAAAAAttgctataaaaatgtaaatatattttcaaatgtttctaaAACTGAAATGGAAATTTAAGCAAAAGAATATACCTGACTTGAGCCATGTCAAAAACAGACTGAGGTGTAACTGTCAAGCTCAAAGTTGTATTTTTACTGTTTGTAAAAGCTGTTGTATTTTGTACCCCCTACACCTGTGACTTGTCTACAGCTGTGGCTTGTATACAgttgaaatatctcaaaaagCACTAAATCACACCAACTTAGTTTTTCATCAGCTGTAAAGTGCACATGAAGAGATTTTATGTGGCTGTATTCAGTGAAATTGTGCACTTTACTTACAAAGCCATTCAGCATTGATAAGTTTggtgttttacacacacacacacacacacacacacacacacacacacatacacacatatatggaATTGCTGAAAAGAAGAAGACACACATTATTCATCCAATGAAACAACTCCAGAAGTTGTTTCTTTGAATGATTGAAATGTCATTCTTTAACTAACCAACTACCAAACCTACAGTTGTGGCCATGGTTACACTTATAGTTGAT

Function

symbol description
opn5 Enables 11-cis retinal binding activity and all-trans retinal binding activity. Acts upstream of or within absorption of visible light. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; integument; nervous system; and testis. Orthologous to human OPN5 (opsin 5).

NR:

description
PREDICTED: opsin-5-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08385 OPN5; G0-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
TU247822 False 408 lncRNA 0.36 1 8049578 8049985
XM_039780983.1 True 2259 mRNA 0.45 7 8049458 8126664
XM_039780984.1 False 2139 mRNA 0.45 6 8049458 8126664

Neighbor

gene id symbol gene type direction distance location
cnih3 cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542 coding downstream 461393 7444861 ~ 7588065 (-)
meis2b LOC104938729,LOC103355645,LOC105017579 coding downstream 1248665 6762711 ~ 6800793 (-)
LOC120546794 NA coding downstream 1584656 6462940 ~ 6464802 (-)
LOC120546792 LOC104959018 coding downstream 1976238 6070546 ~ 6073220 (-)
gopc gopc coding downstream 2040018 5986437 ~ 6009440 (-)
LOC120546734 cd2ap coding upstream 125052 8251716 ~ 8340747 (-)
LOC120546378 NA coding upstream 422515 8549179 ~ 8550180 (-)
LOC120546379 LOC103375580 coding upstream 431805 8558469 ~ 8559470 (-)
LOC120546380 NA coding upstream 438479 8565143 ~ 8566141 (-)
LOC120546382 NA coding upstream 445739 8572403 ~ 8573320 (-)
G182983 NA non-coding downstream 1520 8047500 ~ 8047938 (-)
G182980 NA non-coding downstream 7654 8040623 ~ 8041804 (-)
G182962 NA non-coding downstream 195857 7852984 ~ 7853601 (-)
G182958 NA non-coding downstream 211723 7837522 ~ 7837735 (-)
G182957 NA non-coding downstream 212661 7836593 ~ 7836797 (-)
G183006 NA non-coding upstream 64514 8191178 ~ 8191474 (-)
G183013 NA non-coding upstream 118901 8245565 ~ 8245765 (-)
G183027 NA non-coding upstream 304698 8431362 ~ 8431674 (-)
G183042 NA non-coding upstream 352248 8478912 ~ 8479346 (-)
G183068 NA non-coding upstream 644624 8771288 ~ 8771585 (-)
G182977 NA other downstream 24414 8024715 ~ 8025044 (-)
G182952 NA other downstream 283072 7761565 ~ 7766386 (-)
G182764 NA other downstream 1348341 6700491 ~ 6701117 (-)
cgrrf1 NA other downstream 1780315 6232742 ~ 6269143 (-)
G182502 NA other downstream 2137549 5911312 ~ 5911909 (-)
LOC120546397 NA other upstream 654664 8781328 ~ 8787218 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other upstream 894296 9020960 ~ 9024565 (-)
G183176 NA other upstream 1002909 9129573 ~ 9133472 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other upstream 1972814 10099478 ~ 10101061 (-)
LOC120546776 NA other upstream 2328580 10455244 ~ 10610625 (-)

Expression


Co-expression Network