LOC120546609 (LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678)


Basic Information

Item Value
gene id LOC120546609
gene name LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9020960 ~ 9024565 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU248075
ACGCACGGTCCCATCATCCTCTTCCTGGTATGAGCGTGTGTTGACACTTTACACCTAGTTTGGGTGGCCGAAACAAGGGGGTTGAAGCGACTGTTTTGTGGCAAAAATGGCACGCTTTTCGAGCGGAAAGACGGTCCTGCGCGAGGATATGGAAAGGCAGCCATCAGGAAACGTTTGACGTTCGGTTTCAAGTCGCGCGACGTTGGGACTTGTTCATTCACTCGCCGCAACGAGTTGGGAGTTAACGACGTTTACAATGAAGCCGCGCGCGATAAGGTGGAAAGTGACCTTTTGGAGTCTTGTTCAAGATCTTTTGTTCTGCAAACATCAGGGGGGATCTGTGATTTGGCATTCCTATATTTGCACCTTctgttttaatttcttttgggATATTTTATCCAAATGAAAACCGAATGAATTGTTTTTGGGTTTTATAAAAATGCATTTCTGTTCCTTTTTTCTGGCATTCGCTAATAATCCAACTATAACTGAAGTTGTGTTATTTCATTTGAATTAGTTATCAACACAAGCATATTGATGCAATTCTTGCCTTTTTAAAGCTGACAAAGTGCCTTGATTGTTATTTGTACCATTTTTAAAGAGATTTTTAAAGGTGCACTGATAACATTGTTGTTGACAAAGTGGAAATGCATTTGTAAGTGCTGGGGActtgtgtttatatatttgtatgtcTTTCTTCATGAGATGTTGAGGGGAAAATGGAATGTGAATGTctatttcacaaaaaatctTCATTGTACAATTAGGTAAAAATATTTTGCATCGCTCTGGCATCTTGTAACTGGTGACAGCAGCTCCAGATAAGTGGTTCAATCGGATATTGGTTCACCTCAGTGTGCCTTATGGAGATTCCTGGtaaaataatatgaaatgaatgtgataatgaaataaataagatttttatttcttgaaaagcacaattatttttttaaaaggaacatGGCAAAGATGGCCTAATAAATAAAGATGTACTATACTGTGTCTATGCCGGATGTTTGATTCCTTAGTTGGTTGAGAATAAGaccaactttttttgttttctatcttttctttctgATAATCACTTGAAATAGCTGTTCATTGTTCATTGTTCACCTATTGTCTGCCAAATGGAAA
>XM_039781668.1
aaaaaaaataataataataaaagaaaaaatgaggTTTCGGCTGCTTAAGAGGAATCTGCTCGCGCTGTTGGGTGTTTCCTTTGTAGTTGTGACTCTCCTGTTTTCAACACGTGTGTTATTAGTTTCCGATAATGACACAACTGTAcctaatgatgatgatgatgacgtcAGTGGGGATAATAAGTGCACGCGCTCTGGTGCCGCGGCGAAGTTTAACTTCGGCTCGCTCGCGGAGCTGACTAAGTCCGTTTACAATGCCAATTACAGGCAGTGCGTTCACAACGCGGATAGGTTCCCAGGGGAGCCCGGACTGGTGCTGGTCGTGCAGGTCCACAACAGGCCTGAATACCTCCGACTGCTCGTCAAGTCGCTGGAGAAAGCGGCCGAAGTCCACAGCTTCCTCCTCATCTTCAGCCATGACTACTTTTCAGAGGAAATGAACGCCATTGTGCAAGGGATAACTTTCTGCAAAGTCCTGCAAATCTATTTCCCCTTCAGCACTCAGCTGTATCCCGAGGAGTTTCCTGGAAAGGATCCGAGGGACTGCTCCCGAGACCTGTCCAAGGACGACGCTCTCAAAACAGGATGCCTGAACGCGGAACACCCGGACTCGTACGGACACTACAGGGAGGCGTTCATCACTCAAACCAAACACCACTGGTGGTGGAAATTGCACTTTGTGTGGGAGCGAGTGCAGGCCATGCAGGGCTACAGTGGCTTTGTAGTCTTTCTGGAGGAGGACAACTACATATTACCAGACTTTTTCCATTTCTATAAATCGATGATGGAGTTCAGGAAGAGCAGCTGCCCGGATTGTGACATGCTGTCCTTGGGCAACCACAATGGACTGACCGATTTCACCAGACTGTCCAGTAAGGTGTCGACCACTGGGTGGATGTCCACTAAACACAACATAGGCATGGCCATCTCCAGGGAGGTGTACTACAAACTGATGGGCTGCAACAACGAATTCTGCACCTATGACGACTACAACTGGGACTGGACTCTGCAGCACCTGTCGGGAACCTGCATATCGAAGCCCGTCAAAGTGCTTGCGGCGCAGGGCTCCAGGGTTCTCCACACGGGAGACTGTGGCCTTCACCAGAAGGAGAACTGCAGGCCAGAATGGGCCTCGCAGAAAGTAGAGGAGAGCCTTCTAGCGGCCAACGACGGCCTCTTCCCGCCGTCTCTTGTCCTTAATGGCGCAGAAGGAGTTGAGCACAAGGCGCACATGAAGAATGGCGGATGGGGGGATGTTCGAGACCATATTCTATGCAAAAACTACGCCAAACGTCTTTGAACTGCCACCGTTGCGCTAAGTCATGTCCTCCATTGGTATTCTGCGGATGTGCCATTCATTCATAACTTTTCAGGGTTTCAGAGGATGCAGTGggttgcgtttttttttttttcactcggGAGTGTACTAATGTTCTCTTCCAGCAAGGTCTTCGAAGAAAAGGGACCGAATCAAGTCCAAAAAAAATGCTGCTGGTACACAGCTAGACGTCagcttgttttgtgtgttttaaatcGCCAAAGCTGCACAGTTGCCAAAGACATTTTTTGAaatttgtgttgtgttgaatGCAGCCAATCATGTTGCCAGGTTTGTTTACTGTATCTCTGGGTGTTTTCACAAGCCAAaacattatacatatatacatacatacatacatacatacatacatacatgaacAAATTTGCAAttttatttgcaaatatatttttttcttgacTGGGAATGTGTTGCAAAGGGTGTTGTTAATATGCAGTTTATTCACAACAAGTTAACCCAAGTTAAAacggtgtgtttttgtgtgtgatgaatggCTGCCTGCCATTTCTTTTATGACCCATTCAGCTGGAATGCTTTTGCATGTGCTCTTTAATGGTACGATTTTTAAATTGCAACAACAAAAGTCTGTACTGTACagactttaattaaaaaaaaaaaaaaaaaagtgtaagacAATCTGAAATAGAATTGTGGGTGGGGAAGTTGTAGTTTATAcagcaatcttttttttttttttttttttttttcaagttgacCATTGACcataatgtcaaaaaaatgatttaatgcATATAATGGACTTTGTTACTGTAACCAGGGGTCTTTTTCTTTTGAGTTTAGGTCAACTGGTACCACTTACTTAATCAGTCTCCTACTCCCCACTGTAATGACCCCTGGTTGCAACAAGAGCGCTGGcttgatattgatttttttttttttttttcttttggttgtgacgcttatttgctttctgatAGGTGGAAAGTGACCTTTTGGAGTCTTGTTCAAGATCTTTTGTTCTGCAAACATCAGGGGGGATCTGTGATTTGGCATTCCTATATTTGCACCTTctgttttaatttcttttgggATATTTTATCCAAATGAAAACCGAATGAATTGTTTTTGGGTTTTATAAAAATGCATTTCTGTTCCTTTTTTCTGGCATTCGCTAATAATCCAACTATAACTGAAGTTGTGTTATTTCATTTGAATTAGTTATCAACACAAGCATATTGATGCAATTCTTGCCTTTTTAAAGCTGACAAAGTGCCTTGATTGTTATTTGTACCATTTTTAAAGAGATTTTTAAAGGTGCACTGATAACATTGTTGTTGACAAAGTGGAAATGCATTTGTAAGTGCTGGGGActtgtgtttatatatttgtatgtcTTTCTTCATGAGATGTTGAGGGGAAAATGGAATGTGAATGTctatttcacaaaaaatctTCATTGTACAATTAGGTAAAAATATTTTGCATCGCTCTGGCATCTTGTAACTGGTGACAGCAGCTCCAGATAAGTGGTTCAATCGGATATTGGTTCACCTCAGTGTGCCTTATGGAGATTCCTGGtaaaataatatgaaatgaatgtgataatgaaataaataagatttttatttcttgaaaagcacaattatttttttaaaaggaacatGGCAAAGATGGCCTAATAAATAAAGATGTACTATACTGTGTCTATGCCGGATGTTTGATTCCTTAGTTGGTTGAGAATAAGaccaactttttttgttttctatcttttctttctgATAATCACTTGAAATAGCTGTTCATTGTTCATTGTTCACCTATTGTCTGCCAAATGGAAAAATAAAAGGCTGAACTTTT

Function

NR:

description
PREDICTED: alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU248075 False 1137 lncRNA 0.38 3 9020979 9024565
XM_039781668.1 True 3157 mRNA 0.41 1 9020960 9024116

Neighbor

gene id symbol gene type direction distance location
brox brox,LOC102780098 coding downstream 532 9003269 ~ 9020428 (-)
LOC120546203 NA coding downstream 20640 8998892 ~ 9000320 (-)
LOC120546235 LOC107100257 coding downstream 29592 8961680 ~ 8991368 (-)
mep1a.1 LOC103374245,LOC100712081,LOC105920587 coding downstream 70557 8935924 ~ 8950403 (-)
LOC120547332 LOC103374244,LOC103457752,LOC100712349,LOC103148799 coding downstream 89467 8917513 ~ 8931493 (-)
disp1 disp1 coding upstream 130459 9155024 ~ 9288203 (-)
LOC120547212 NA coding upstream 305919 9330484 ~ 9402765 (-)
si:ch211-63o20.7 LOC103362993,LOC101481409 coding upstream 436213 9460778 ~ 9470517 (-)
znf395b znf395 coding upstream 480867 9505432 ~ 9527428 (-)
paqr8 paqr8 coding upstream 525439 9550004 ~ 9556929 (-)
G183136 NA non-coding downstream 22132 8998575 ~ 8998828 (-)
G183068 NA non-coding downstream 249375 8771288 ~ 8771585 (-)
G183042 NA non-coding downstream 541614 8478912 ~ 8479346 (-)
G183027 NA non-coding downstream 589286 8431362 ~ 8431674 (-)
G183013 NA non-coding downstream 775195 8245565 ~ 8245765 (-)
LOC120546288 NA non-coding upstream 73806 9098371 ~ 9099326 (-)
G183175 NA non-coding upstream 102156 9126721 ~ 9129230 (-)
G183177 NA non-coding upstream 108971 9133536 ~ 9134536 (-)
G183178 NA non-coding upstream 109980 9134545 ~ 9134808 (-)
G183180 NA non-coding upstream 122524 9147089 ~ 9148100 (-)
LOC120546397 NA other downstream 233742 8781328 ~ 8787218 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other downstream 894296 8049458 ~ 8126664 (-)
G182977 NA other downstream 995916 8024715 ~ 8025044 (-)
G182952 NA other downstream 1254574 7761565 ~ 7766386 (-)
G182764 NA other downstream 2319843 6700491 ~ 6701117 (-)
G183176 NA other upstream 105008 9129573 ~ 9133472 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other upstream 1074913 10099478 ~ 10101061 (-)
LOC120546776 NA other upstream 1430679 10455244 ~ 10610625 (-)
G183528 NA other upstream 1496152 10520717 ~ 10521410 (-)
G183650 NA other upstream 2349543 11374108 ~ 11374615 (-)

Expression


Co-expression Network