LOC120546255


Basic Information

Item Value
gene id LOC120546255
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9935187 ~ 9969773 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU248334
cgcgcctcacaccgcgagcgagcgggcgcgtgcgccacacagaaaaaagtgagaaaaaagaaagagagactgctgtccggaggataatcagttgagatggtgtgtgtgcgtccttgagaactGAACAATGACAGCTGTGTAGAGCTTCCTGAACATTACCAGTGGGCCTGAGAGCCTGGTTATGTCGCTACAGTTTCTGCTATGGTACAAGCAGCCGTGACCTTGCTGAATGAAGTGCACTCTCTCCTCAGgagGGGAGGGGTGTACACTCCAGGAGCTGCCTTCTATAAAACTAGTCTCATCGACCGCCTCCATAACCACAGCATCAAGTTTTCAGTCAGAGGCTACCAATAACGCTTTATCACTGTGTAGGGCACGCCAGCTTCCAGTTACAGGATGTCAGTGCTGCTCAACTTGTatagatcttctgtgctgccggGTGGAAATTTTGTAGACAGATTCAGATACActt
>TU248335
gtgacgcTCGTAtggccttgctggatacaccgtgactctgtttgtggatctactgatcgctgtggattactttttttttcgtgTCATTACGGCAAAATACGGATCTTTTTTTCTCAACGTCTCTTAATGTTTTATGGAACACTGACAGCTGTGGAGAGCTTCCTGAACATTACCAGTGGGCCTGAGAGCCTGGTTATGTCGCTACAGTTTCTGCTATGGTACAAGCAGCCGTGACCTTGCTGAATGAAGTGCACTCTCTCCTCAGgagGGGAGGGGTGTACACTCCAGGAGCTGCCTTCTATAAAACTAGTCTCATCGACCGCCTCCATAACCACAGCATCAAGTTTTCAGTCAGAGGCTACCAATAACGCTTTATCACTGTGTAGGGCACGCCAGCTTCCAGTTACAGGATGTCAGTGCTGCTCAACTTGTatagatcttctgtgctgccggGTGGAAATTTTGTAGACAGATTCAGATACActt
>TU248336
CAGAGCCTGGTTATGTCGCTACAGTTTCTGCTATGGTACAAGCAGCCGTGACCTTGCTGAATGAAGTGCACTCTCTCCTCAGgagGGGAGGGGTGTACACTCCAGGAGCTGCCTTCTATAAAACTAGTCTCATCGACCGCCTCCATAACCACAGCATCAAGTTTTCAGTCAGAGGCTACCAATAACGCTTTATCACTGTGTAGGGCACGCCAGCTTCCAGTTACAGGATGTCAGTGCTGCTCAACTTGTatagatcttctgtgctgccggGTGGAAATTTTGTAGACAGATTCAGATACActt
>TU248337
cgcgcctcacaccgcgagcgagcgggcgcgtgcgccacacagaaaaaagtgagaaaaaagaaagagagactgctgtccggaggataatcagttgagatggtgtgtgtgcgtccttgagaactAGCCTGGTTATGTCGCTACAGTTTCTGCTATGGTACAAGCAGCCGTGACCTTGCTGAATGAAGTGCACTCTCTCCTCAGgagGGGAGGGGTGTACACTCCAGGAGCTGCCTTCTATAAAACTAGTCTCATCGACCGCCTCCATAACCACAGCATCAAGTTTTCAGTCAGAGGCTACCAATAACGCTTTATCACTGTGTAGGGCACGCCAGCTTCCAGTTACAGGATGTCAGTGCTGCTCAACTTGTatagatcttctgtgctgccggGTGGAAATTTTGTAGACAGATTCAGATACActt
>XR_005636844.1
gtccggaggataatcagttgagatggtgtgtgtgcgtccttgagaactGAACAATGACAGCTGTGTAGAGCTTCCTGAACATTACCAGTGGGCCTGAGAGCCTGGTTATGTCGCTACAGTTTCTGCTATGGTACAAGCAGCCGTGACCTTGCTGAATGAAGTGCACTCTCTCCTCAGgagGGGAGGGGTGTACACTCCAGGAGCTGCCTTCTATAAAACTAGTCTCATCGACCGCCTCCATAACCACAGCATCAAGTTTTCAGTCAGAGGCTACCAATAACGCTTTATCACTGTGTAGGGCACGCCAGCTTCCAGTTACAGGATGTCAGTGCTGCTCAACTTGTatagatcttctgtgctgccggGTGGAAATTTTGTAGACAGATTCAGATACActtaatagtttttttattaaactgctTTAAGTTGCTCTGA

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU248334 False 472 lncRNA 0.50 4 9935224 9938556
TU248335 True 486 lncRNA 0.47 4 9935224 9969773
TU248336 False 303 lncRNA 0.49 2 9935224 9935658
TU248337 False 422 lncRNA 0.50 3 9935224 9938556
XR_005636844.1 False 435 lncRNA 0.47 4 9935187 9938482

Neighbor

gene id symbol gene type direction distance location
LOC120546991 NA coding downstream 79803 9853740 ~ 9855384 (-)
stmn4 stmn4 coding downstream 312476 9603488 ~ 9622711 (-)
paqr8 paqr8 coding downstream 378258 9550004 ~ 9556929 (-)
znf395b znf395 coding downstream 407759 9505432 ~ 9527428 (-)
si:ch211-63o20.7 LOC103362993,LOC101481409 coding downstream 464670 9460778 ~ 9470517 (-)
LOC120547244 NA coding upstream 166227 10136000 ~ 10137776 (-)
cnstb LOC103373900 coding upstream 178302 10148075 ~ 10173978 (-)
kif26bb NA coding upstream 208536 10178309 ~ 10208325 (-)
lft1 LOC104927083,LOC104968260,LOC100695903,LOC101475792,LOC102299013 coding upstream 257043 10226816 ~ 10229005 (-)
fzd3a fzd3 coding upstream 377227 10347000 ~ 10379127 (-)
G183317 snap25,snap25a,LOC107719097,LOC102796069,LOC107698362,LOC107599071 non-coding downstream 88329 9829876 ~ 9846858 (-)
G183299 LOC103398511 non-coding downstream 216982 9716590 ~ 9718205 (-)
G183298 emilin1,LOC103398511,LOC103372345 non-coding downstream 219848 9709053 ~ 9715339 (-)
G183296 NA non-coding downstream 248068 9686722 ~ 9687119 (-)
G183263 NA non-coding downstream 391961 9532546 ~ 9543226 (-)
G183382 NA non-coding upstream 75408 10045181 ~ 10045495 (-)
G183383 NA non-coding upstream 78184 10047957 ~ 10048232 (-)
LOC120547073 NA non-coding upstream 94820 10064593 ~ 10066286 (-)
G183458 NA non-coding upstream 204963 10174736 ~ 10175355 (-)
G183457 NA non-coding upstream 207127 10176900 ~ 10177569 (-)
G183176 NA other downstream 801715 9129573 ~ 9133472 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other downstream 910622 9020960 ~ 9024565 (-)
LOC120546397 NA other downstream 1147969 8781328 ~ 8787218 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other downstream 1808523 8049458 ~ 8126664 (-)
G182977 NA other downstream 1910143 8024715 ~ 8025044 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other upstream 129705 10099478 ~ 10101061 (-)
LOC120546776 NA other upstream 485471 10455244 ~ 10610625 (-)
G183528 NA other upstream 550944 10520717 ~ 10521410 (-)
G183650 NA other upstream 1404335 11374108 ~ 11374615 (-)
ost4 NA other upstream 2937529 12907302 ~ 12908747 (-)

Expression


Co-expression Network