LOC120546281 (LOC107372644,LOC107099224,LOC106591698)


Basic Information

Item Value
gene id LOC120546281
gene name LOC107372644,LOC107099224,LOC106591698
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10099478 ~ 10101061 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU248390
CCCCCGACCCCTTCTTTGCATGTCGGCTGTTCCTGTGGATGCCACACAGGATCTGGCATCTGCAGCTGACGTGCCCCCAGCCTTTGTGCACCGGTACCATGACAAAGGCTGGGCTGTACAGGACCATCCGGAGGGTCCTGGACATCGACGGCTGGTATCTCATGGCCACTGAGTACCTAGAGTGCCGTCGGTGTAAGAAGAAGGTCGGAGGGTGGTCACAGGGCATCATCAGGCAGCTGTCCCCCACCTACAGCTGCCAATTCCCAGCTGTACTTACGTACAAGCTGTCCTGTGACCTTAGGGTGGTCGTACAGCTGAGGTCTCGCACTCTGGGTAACAGTGCTTCTCGGCTGTGCAACACCCTGCGGGAGGCGCACTCAGATGCCTGGATGCGGAGAGCTATCGCGTACCTCGGCGTGTGCGAGCAGTTCCTGGCCTTGTGCACGGTGAGGGGGCAGTTCCCACCACCACCCCAGATGCCCCCTCTCCCCTCCGCCGTCTGGCTGTTGACAGTCTACAGCCATGACGTCCTGACGCGGCTGGAGGAGTACAAGGCCAGGATCACGTCCACCTTGGGATCCATCCTAAAGATGGATTCCACTAAGAAGGTGACGAAAAAGCTTGCAGGTACCGCTGAAGACACGGCCGCCTGGGTTACCAACGTGGGTAACGAGCACGGGCAGGTCCTCATCAGTGTCCTCACCTGCTCCGAGGGCACCGAGGGCCTGTCCCCCATGGCGGTCGGGTTGATGAGGCGGTACCGACTCGCCGGGGTACATCCCCCCCAGCTGATCTACGTGGATCGTGACTGCTGCAGCCGAGACGGCGTGTCGAAGACAGCTGCCTTGTTTCAGGAGTGGGGACAGCTCGTGGTGAGACTGGAC
>XM_039781122.1
CCTTCTTTGCATGTCGGCTGTTCCTGTGGATGCCACACAGGATCTGGCATCTGCAGCTGACGTGCCCCCAGCCTTTGTGCACCGGTACCATGACAAAGGCTGGGCTGTACAGGACCATCCGGAGGGTCCTGGACATCGACGGCTGGTATCTCATGGCCACTGAGTACCTAGAGTGCCGTCGGTGTAAGAAGAAGGTCGGAGGGTGGTCACAGGGCATCATCAGGCAGCTGTCCCCCACCTACAGCTGCCAATTCCCAGCTGTACTTACGTACAAGCTGTCCTGTGACCTTAGGGTGGTCGTACAGCTGAGGTCTCGCACTCTGGGTAACAGTGCTTCTCGGCTGTGCAACACCCTGCGGGAGGCGCACTCAGATGCCTGGATGCGGAGAGCTATCGCGTACCTCGGCGTGTGCGAGCAGTTCCTGGCCTTGTGCACGGTGAGGGGGCAGTTCCCACCACCACCCCAGATGCCCCCTCTCCCCTCCGCCGTCTGGCTGTTGACAGTCTACAGCCATGACGTCCTGACGCGGCTGGAGGAGTACAAGGCCAGGATCACGTCCACCTTGGGATCCATCCTAAAGATGGATTCCACTAAGAAGGTGACGAAAAAGCTTGCAGGTACCGCTGAAGACACGGCCGCCTGGGTTACCAACGTGGGTAACGAGCACGGGCAGGTCCTCATCAGTGTCCTCACCTGCTCCGAGGGCACCGAGGGCCTGTCCCCCATGGCGGTCGGGTTGATGAGGCGGTACCGACTCGCCGGGGTACATCCCCCCCAGCTGATCTACGTGGATCGTGACTGCTGCAGCCGAGACGGCGTGTCGAAGACAGCTGCCTTGTTTCAGGTGTCACCACAGAGACCCACGAGCTGTACGCCCCCTTCATGAGGCAGCTGTCTCACTGCATCTTCGAGGTGGACTCGTGAGATGCCCGCCGTCT
>XM_039781123.1
CCTTCTTTGCATGTCGGCTGTTCCTGTGGATGCCACACAGGATCTGGCATCTGCAGCTGACGTGCCCCCAGCCTTTGTGCACCGGTACCATGACAAAGGCTGGGCTGTACAGGACCATCCGGAGGGTCCTGGACATCGACGGCTGGTATCTCATGGCCACTGAGTACCTAGAGTGCCGTCGGTGTAAGAAGAAGGTCGGAGGGTGGTCACAGGGCATCATCAGGCAGCTGTCCCCCACCTACAGCTGCCAATTCCCAGCTGTACTTACGTACAAGCTGTCCTGTGACCTTAGGGTGGTCGTACAGCTGAGGTCTCGCACTCTGGGTAACAGTGCTTCTCGGCTGTGCAACACCCTGCGGGAGGCGCACTCAGATGCCTGGATGCGGAGAGCTATCGCGTACCTCGGCGTGTGCGAGCAGTTCCTGGCCTTGTGCACGGTGAGGGGGCAGTTCCCACCACCACCCCAGATGCCCCCTCTCCCCTCCGCCGTCTGGCTGTTGACAGTCTACAGCCATGACGTCCTGACGCGGCTGGAGGAGTACAAGGCCAGGATCACGTCCACCTTGGGATCCATCCTAAAGATGGATTCCACTAAGAAGGTGACGAAAAAGCTTGCAGGTACCGCTGAAGACACGGCCGCCTGGGTTACCAACGTGGGTAACGAGCACGGGCAGGTCCTCATCAGTGTCCTCACCTGCTCCGAGGGCACCGAGGGCCTGTCCCCCATGGCGGTCGGGTTGATGAGGCGGTACCGACTCGCCGGGGTACATCCCCCCCAGCTGATCTACGTGGATCGTGACTGCTGCAGCCGAGACGGCGTGTCGAAGACAGCTGCCTTGTTTCAGAGACCCACGAGCTGTACGCCCCCTTCATGAGGCAGCTGTCTCACTGCATCTTCG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107372644 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248390 False 884 TUCP 0.61 4 10099603 10101061
XM_039781122.1 True 939 mRNA 0.60 4 10099478 10101052
XM_039781123.1 False 899 mRNA 0.60 4 10099506 10101052

Neighbor

gene id symbol gene type direction distance location
LOC120547068 NA coding downstream 153737 9944865 ~ 9945741 (-)
LOC120546991 NA coding downstream 244094 9853740 ~ 9855384 (-)
stmn4 stmn4 coding downstream 476767 9603488 ~ 9622711 (-)
paqr8 paqr8 coding downstream 542549 9550004 ~ 9556929 (-)
znf395b znf395 coding downstream 572050 9505432 ~ 9527428 (-)
LOC120547244 NA coding upstream 34939 10136000 ~ 10137776 (-)
cnstb LOC103373900 coding upstream 47014 10148075 ~ 10173978 (-)
kif26bb NA coding upstream 77248 10178309 ~ 10208325 (-)
lft1 LOC104927083,LOC104968260,LOC100695903,LOC101475792,LOC102299013 coding upstream 125755 10226816 ~ 10229005 (-)
fzd3a fzd3 coding upstream 245939 10347000 ~ 10379127 (-)
LOC120547073 NA non-coding downstream 33192 10064593 ~ 10066286 (-)
G183383 NA non-coding downstream 51246 10047957 ~ 10048232 (-)
G183382 NA non-coding downstream 53983 10045181 ~ 10045495 (-)
LOC120546255 NA non-coding downstream 129705 9935187 ~ 9969773 (-)
G183317 snap25,snap25a,LOC107719097,LOC102796069,LOC107698362,LOC107599071 non-coding downstream 252620 9829876 ~ 9846858 (-)
G183458 NA non-coding upstream 73675 10174736 ~ 10175355 (-)
G183457 NA non-coding upstream 75839 10176900 ~ 10177569 (-)
G183492 hnrnpu non-coding upstream 115290 10216351 ~ 10217126 (-)
G183497 NA non-coding upstream 119857 10220918 ~ 10233568 (-)
G183530 NA non-coding upstream 456426 10557487 ~ 10558119 (-)
G183176 NA other downstream 966006 9129573 ~ 9133472 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other downstream 1074913 9020960 ~ 9024565 (-)
LOC120546397 NA other downstream 1312260 8781328 ~ 8787218 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other downstream 1972814 8049458 ~ 8126664 (-)
G182977 NA other downstream 2074434 8024715 ~ 8025044 (-)
LOC120546776 NA other upstream 354183 10455244 ~ 10610625 (-)
G183528 NA other upstream 419656 10520717 ~ 10521410 (-)
G183650 NA other upstream 1273047 11374108 ~ 11374615 (-)
ost4 NA other upstream 2806241 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 2859437 12960498 ~ 13007868 (-)

Expression

LOC120546281(LOC107372644,LOC107099224,LOC106591698) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC120546281(LOC107372644,LOC107099224,LOC106591698) Expression in each Bioproject

Bar chart with 8 bars.
LOC120546281(LOC107372644,LOC107099224,LOC106591698) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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Co-expression Network