G183457


Basic Information

Item Value
gene id G183457
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10176900 ~ 10177569 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU248447
TGCAGATAATATTTAGTACACTTAAAGCAGTCTCAGACTATTGGACTGATTCCTCTGCCTTAAAGTTGCTCTTTCTTCATCTTTGATTACAGTAAGAGGTTTTGGCCATCACAGTTATTCAAAAGGGGATATGCCATTTTGTATATAGATTTTGGTGCtgaatacaattatgaaaatatatgtgtgtatttcaaaTCTTTTGAAACTAATGTAAAAATGCACCCAAAGCAGTTTCTCTGTAAGCTGTGGAAGACGTGACTTAGCCGTCTGAAAAAGATGAGTGAAGGACTGAAGGATGGATGGCTAACGATCAATAAACTGGCTGCTAGAACACATTAGTAAATGATTGGAGGCAAAATAACAAATGTGGATTCTGCTCTCAGtgtaattacattattattattacgtcaTCATGTCTGAAGAGACCTGTGAAGTCACTGAGTCAATGAAAGAGGATGGACAGATGCATAGTAATCAATGGACAATGTTAGGTTTTCTACCTAGATCAATGCATTTTAAATgtacgtgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactggacgtCTGTTTTGTGAATCCTATTAATCAGCATGTTGTACGTCACTGTTAATAAATGACCACAGC

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04145 Phagosome
ko04966 Collecting duct acid secretion
ko04721 Synaptic vesicle cycle
ko05110 Vibrio cholerae infection
ko05120 Epithelial cell signaling in Helicobacter pylori infection
ko05323 Rheumatoid arthritis

RNA

RNA id representative length rna type GC content exon number start site end site
TU248447 True 670 lncRNA 0.38 1 10176900 10177569

Neighbor

gene id symbol gene type direction distance location
cnstb LOC103373900 coding downstream 2922 10148075 ~ 10173978 (-)
LOC120547244 NA coding downstream 39124 10136000 ~ 10137776 (-)
LOC120547068 NA coding downstream 231159 9944865 ~ 9945741 (-)
LOC120546991 NA coding downstream 321516 9853740 ~ 9855384 (-)
stmn4 stmn4 coding downstream 554189 9603488 ~ 9622711 (-)
kif26bb NA coding upstream 740 10178309 ~ 10208325 (-)
lft1 LOC104927083,LOC104968260,LOC100695903,LOC101475792,LOC102299013 coding upstream 49247 10226816 ~ 10229005 (-)
fzd3a fzd3 coding upstream 169431 10347000 ~ 10379127 (-)
fam49a fam49a coding upstream 221233 10398802 ~ 10449410 (-)
sf3b6 sf3b6,pm14,SF3B6 coding upstream 484548 10662117 ~ 10666300 (-)
G183458 NA non-coding downstream 1545 10174736 ~ 10175355 (-)
LOC120547073 NA non-coding downstream 110614 10064593 ~ 10066286 (-)
G183383 NA non-coding downstream 128668 10047957 ~ 10048232 (-)
G183382 NA non-coding downstream 131405 10045181 ~ 10045495 (-)
LOC120546255 NA non-coding downstream 207127 9935187 ~ 9969773 (-)
G183492 hnrnpu non-coding upstream 38782 10216351 ~ 10217126 (-)
G183497 NA non-coding upstream 43349 10220918 ~ 10233568 (-)
G183530 NA non-coding upstream 379918 10557487 ~ 10558119 (-)
G183531 NA non-coding upstream 388347 10565916 ~ 10566164 (-)
G183534 NA non-coding upstream 413511 10591080 ~ 10591338 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 75839 10099478 ~ 10101061 (-)
G183176 NA other downstream 1043428 9129573 ~ 9133472 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other downstream 1152335 9020960 ~ 9024565 (-)
LOC120546397 NA other downstream 1389682 8781328 ~ 8787218 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other downstream 2050236 8049458 ~ 8126664 (-)
LOC120546776 NA other upstream 277675 10455244 ~ 10610625 (-)
G183528 NA other upstream 343148 10520717 ~ 10521410 (-)
G183650 NA other upstream 1196539 11374108 ~ 11374615 (-)
ost4 NA other upstream 2729733 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 2782929 12960498 ~ 13007868 (-)

Expression


Co-expression Network