G183875 (snw1,LOC102781075)



Basic Information


Item Value
gene id G183875
gene name snw1,LOC102781075
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12518372 ~ 12521754 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU248982
CTTGCTCTGATTGAAGAGTCGCTGGTCATACTGCGCCTCACTGGCAGAACGAGGGTTGGGCACGCCCAGAGCGATGAGCTCGCTAATGTCCCTGTCCTGATCTCTCTGCAGCTTCGACCTCTTATCAGGAGCAGCCCTGGAAATGTTCCTGTCGTgctgtctctctttccttctgtcATGACGGATCTCGTCACGCTCCCTGACCTCGGTGTCCTCGCCACCTTTGTCCCCGTGACTTTTGATCCCTGCCCTGCGGTCTCGAGCCATTTGGGCAAGTTCCCTCAgtttctcctccttcttctccttctccttctggGCCATCTTCTTCTCTACCTGGGCTCTCATCTCCACTGCCTCTCTGGCCTTTCTATCAGCGATGTAGAGCGCCTCAGCCAGCTTTGCAAAGTTTTCGTTGATGTGAACGGTTTGCAGCCCCCTAC

Function


symbol description
snw1 Acts upstream of or within neural crest formation and positive regulation of BMP signaling pathway. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Is expressed in ectoderm; mesoderm; and neural plate. Human ortholog(s) of this gene implicated in breast cancer and pancreatic cancer. Orthologous to human SNW1 (SNW domain containing 1).

NR:

description
PREDICTED: SNW domain-containing protein 1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU248982 True 440 lncRNA 0.55 4 12518372 12521754

Neighbor


gene id symbol gene type direction distance location
nrxn3b LOC102203786,LOC101486071,LOC103457817 coding downstream 160141 12027548 ~ 12358231 (-)
tshr tshr coding downstream 600231 11893534 ~ 11918141 (-)
kcnk13b kcnk13,LOC106526329 coding downstream 845283 11659994 ~ 11673089 (-)
LOC120547092 psmc1 coding downstream 868312 11638846 ~ 11650060 (-)
LOC120546716 calm1,LOC107396020,LOC102778633,LOC102293206,LOC103380713 coding downstream 884042 11619704 ~ 11634330 (-)
trnat-ugu_2 NA coding upstream 61415 12583169 ~ 12583241 (-)
ccnk ccnk coding upstream 174183 12695937 ~ 12703184 (-)
LOC120546273 NA coding upstream 224632 12746386 ~ 12747738 (-)
LOC120547205 NA coding upstream 425204 12946958 ~ 12948322 (-)
LOC120547206 NA coding upstream 434719 12956473 ~ 12957811 (-)
G183872 NA non-coding downstream 13357 12504685 ~ 12505015 (-)
G183870 NA non-coding downstream 37442 12480533 ~ 12480930 (-)
G183813 NA non-coding downstream 492873 12002717 ~ 12025499 (-)
G183792 NA non-coding downstream 631866 11884577 ~ 11886506 (-)
G183788 NA non-coding downstream 649216 11867161 ~ 11869156 (-)
G183898 NA non-coding upstream 18829 12540583 ~ 12559775 (-)
G183910 NA non-coding upstream 66384 12588138 ~ 12630792 (-)
G183908 NA non-coding upstream 70864 12592618 ~ 12626706 (-)
G183952 NA non-coding upstream 319278 12841032 ~ 12922807 (-)
LOC120546274 NA non-coding upstream 362616 12884370 ~ 12885775 (-)
G183650 NA other downstream 1143757 11374108 ~ 11374615 (-)
LOC120546776 NA other downstream 1907747 10455244 ~ 10610625 (-)
G183528 NA other downstream 1996962 10520717 ~ 10521410 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 2417311 10099478 ~ 10101061 (-)
G183176 NA other downstream 3384900 9129573 ~ 9133472 (-)
ost4 NA other upstream 385548 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 438744 12960498 ~ 13007868 (-)
hmgn3 hmgn3,LOC104958971 other upstream 623710 13145464 ~ 13215900 (-)
runx2b runx2,LOC102312376 other upstream 734131 13255885 ~ 13303784 (-)
fkbp1b fkbp1b other upstream 936848 13458602 ~ 13468065 (-)

Expression



Co-expression Network