G183898


Basic Information

Item Value
gene id G183898
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12540583 ~ 12559775 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU249036
TTGATACAAAGACAGTGATTTAATCTTCACAGCACGGTTTCCAACAGCGTGGTCAACAAACATCATGGCTTTACAAAGTCCTCCAAGTGGTTTATCTTTAACCCAAATACAATTCCAAGGGCAAAAGCAACTGATAAGCAAGTTTCCAATGGTCCCTGCAGTTTGCAGGTAGTTGTGGAAGCTAGGCTGGAAAACTCGCATTACATCAAAGAGCTCCAAGCAACTCAAACATTTTGATAATCTCTTTTGACTTTAATTCCTTAGTTTCAATGAAGGAAACCTGGCTGAGAGAAACGGTCACATTGCTGTTTGCAATTACATTCTTGCCTCCATAGACCGAAATGTAGAGACTTGACATACTGCATGGTGCTGCGTTTAATCACTTTGATGAACATTTATAGGAATGGCCAGCTTTCTGACTGGCTACACTCCCAATTCACATCAATTCGGTGGTagaacataaacacagacacatcagcAGGATATTTGACAGTGGCATGTAACGTTACCACTAAACAAGAAGTTTAAAACGCAAACACAAGTGCAGCTTTCATAGCATATACTAACGTTACCGGTCACAAGCAACATGTGTGTTTTAAAACCACAATGTTAATAATATAAAAGTAGTACTTCGAATGCCACCTGATTAAAAATTAAGTTTAATGTATTTCCGGGTAGCTAGCTTGAAATTTGCCGCATTGGGACAAACTGCAAGGCTAGGAAATAACGCTAGGCATAGGCCGTTATTTAAACTAACATCATATAGCTAACCAAACTAATTAACTAACGtacattagctagctaatgtaaCACTGTTTACATGTCAGGTGACGTTCGGCTGCCGTCATAGAAGGTTGACTTTAAGTTAGCCGCAGCTCacacttttgcaaacaaaacatactCCAAAACAAGAATGCATAGCCGCAAATTATACacggggaaaaaaataattaataacacatgtgCTCACCTTATTTAGTTAATTCAAACTAGTCTAGTACATACAATACCGAACACATCAATGATTGTTTATGGTCCTCCCCTATCGAGCAGTTGACGGTTGGGCCTTACCTTCTCCCTTGGGCGACGATACTTCTGTGGCTCTTGAAACAGCCCGTGGTTCTTCACGAAGCCATTTTTACTCGGTTTTTTACCGTTTGAGGTCCGGTGACAGGAGTCTCCGTTTAGCAGCTTGTTCGAGGAgctttctgtcatttttgtcGGCCGACCGCGACTGTAAATATCCCGATTTGGAGTAACCCAACTTATGTATTGGGAAGTCATGTATGAGCTAGAGTGAGACGAGATGGCTTATTAAACGCCCACTCTGCAGTGTGGCCGCA
>TU249037
TTGATACAAAGACAGTGATTTAATCTTCACAGCACGGTTTCCAACAGCGTGGTCAACAAACATCATGGCTTTACAAAGTCCTCCAAGTGGTTTATCTTTAACCCAAATACAATTCCAAGGGCAAAAGCAACTGATAAGCAAGTTTCCAATGGTCCCTGCAGTTTGCAGGTAGTTGTGGAAGCTAGGCTGGAAAACTCGCATTACATCAAAGAGCTCCAAGCAACTCAAACATTTTGATAATCTCTTTTGACTTTAATTCCTTAGTTTCAATGAAGGAAACCTGGCTGAGAGAAACGGTCACATTGCTGTTTGCAATTACATTCTTGCCTCCATAGACCGAAATGTAGAGACTTGACATACTGCATGGTGCTGCGTTTAATCACTTTGATGAACATTTATAGGAATGGCCAGCTTTCTGACTGGCTACACTCCCAATTCACATCAATTCGGTGGTagaacataaacacagacacatcagcAGGATATTTGACAGTGACAGTGGCATGTATGCCATGTTTGGGGTGACCTCCCACAGAAAAAGGGAGACAAAAACAGTACAACTAAACAATTGACGCTGATATGGAATGTCATTCCAGAAGATGACCACAGATGAactataagaaaaaaaaaaaaaaaaaaaatgacatttgaagCATACCCATACAAATCTTTCAAATTTGAGTGACTACGTCATCTGTGCATTTACAATGCCTGTCAGTAGTGCGAGCACTGAAGTTAAGACGTGTAGGTAGTTCAAAGACACACTGGGACACATTTCGAGCTGCCTTCCAGATCAAAATAATGTTTCACAGAAATAAGAtgacaaagacattttaaataaataaagcagtcTGTAAATCAGATGGGCACGGGAGCGGCATCGTCATACATACAGACCTAAGTTACAGCGTGTCATCGTGCTCAGAGATCGGTGTCGACGCGGATTCACATGAAAGCACTTGAGTGAGAAGGATTTagcaaaagaataaaaataaaaaataatcacacaTGTAGCTCATAAGCTCATAGAAATGTTAAAGACACTGGGCTCAAGATTTTGAGTGCAGGTGTAAATAAGGCTGAAATAGTTTCTAGAAAATAAGGAATAAAAATGTTCCTTATTCTTGCTCCCTGGGATTGTTTCCCtgttaaatgtttaattttGGAACATATGCTTTACATTTTAAGAGAAAAGGTATAAAACATATCTATACATATACATCCTTTGGTTAGGGAAATAACCCAAAATTCTATACTCTATTCAAGTAAAAgtgattagaaaaaaaaaaaaagccatcagATAAATACAGATGGAGTACATATGCTAATGTTACTCCTGTAAAATAATGTATCTCTCTTTGAGGTTTGGGATGCTACCCTAATGCAGCATTACCAACTTCTGGTTAAataatatttactgtacatatatcATTCTTTCCTTTTATGTTCATCATGGCAACAGCTATGATCATATTTCTTTTTCTCCAAGTGCACAAGTAGGAACTTGAGGCAAAAATCTGTCTACTTTGCTCTAGGTTGTTTTGGATTATAAAGACACTCAAAGTTGTTGTTGCTATTGCACGAACAGGACACACATTTAAAAGGTGCACACAGGAATAAGACTTGACTTTAGACCAATGCAGTCACAATAAGTTAGGACAAACTGAAGGGACATATGTGCAGACAGACGTAGGGGGATTTTGGTCCTACCCTGCCATCGGTAAAATCAACTGTACAGGTCACAGACTGCACACAGGCTAATGAGTGGTGCTAGTGTGCAGTTTTCAAAACTGTGAAGACTTTGGTTCTGTCCACGGGAGTCTGATTTGAAGAGATATGGCGAAGCGGGTTGGAGACAGTGGCTCAGAGGAAAATGAGGGATATCGGGCAGGAAAAGGTCAAGTGAGGGAGGGACATTGAGCTGTGGGGAAGAAGGCGGTGATGTGGCTCAGTCCTGAAGCAGGCTCTCCTCGGCCATCCAACCAAGCGAGGGGAGAGGCCGTTCACGTCTGGAGTACTTCAGCTGCAGCAGGTCGCCCACTTCACTGGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249036 False 1343 lncRNA 0.41 3 12540583 12559775
TU249037 True 2052 lncRNA 0.40 2 12557510 12559775

Neighbor

gene id symbol gene type direction distance location
nrxn3b LOC102203786,LOC101486071,LOC103457817 coding downstream 182352 12027548 ~ 12358231 (-)
tshr tshr coding downstream 622442 11893534 ~ 11918141 (-)
kcnk13b kcnk13,LOC106526329 coding downstream 867494 11659994 ~ 11673089 (-)
LOC120547092 psmc1 coding downstream 890523 11638846 ~ 11650060 (-)
LOC120546716 calm1,LOC107396020,LOC102778633,LOC102293206,LOC103380713 coding downstream 906253 11619704 ~ 11634330 (-)
trnat-ugu_2 NA coding upstream 23394 12583169 ~ 12583241 (-)
ccnk ccnk coding upstream 136162 12695937 ~ 12703184 (-)
LOC120546273 NA coding upstream 186611 12746386 ~ 12747738 (-)
LOC120547205 NA coding upstream 387183 12946958 ~ 12948322 (-)
LOC120547206 NA coding upstream 396698 12956473 ~ 12957811 (-)
G183875 snw1,LOC102781075 non-coding downstream 18829 12518372 ~ 12521754 (-)
G183872 NA non-coding downstream 35568 12504685 ~ 12505015 (-)
G183870 NA non-coding downstream 59653 12480533 ~ 12480930 (-)
G183813 NA non-coding downstream 515084 12002717 ~ 12025499 (-)
G183792 NA non-coding downstream 654077 11884577 ~ 11886506 (-)
G183910 NA non-coding upstream 28363 12588138 ~ 12630792 (-)
G183908 NA non-coding upstream 32843 12592618 ~ 12626706 (-)
G183952 NA non-coding upstream 281257 12841032 ~ 12922807 (-)
LOC120546274 NA non-coding upstream 324595 12884370 ~ 12885775 (-)
G183981 NA non-coding upstream 474477 13034252 ~ 13034497 (-)
G183650 NA other downstream 1165968 11374108 ~ 11374615 (-)
LOC120546776 NA other downstream 1929958 10455244 ~ 10610625 (-)
G183528 NA other downstream 2019173 10520717 ~ 10521410 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 2439522 10099478 ~ 10101061 (-)
G183176 NA other downstream 3407111 9129573 ~ 9133472 (-)
ost4 NA other upstream 347527 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 400723 12960498 ~ 13007868 (-)
hmgn3 hmgn3,LOC104958971 other upstream 585689 13145464 ~ 13215900 (-)
runx2b runx2,LOC102312376 other upstream 696110 13255885 ~ 13303784 (-)
fkbp1b fkbp1b other upstream 898827 13458602 ~ 13468065 (-)

Expression


Co-expression Network