G184354


Basic Information

Item Value
gene id G184354
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14699684 ~ 14702181 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU249654
CTTTAATTGCAAGATACACCACACTGAGTTCTCTTTTGTCCAAGCCAAATTTATTATTCTGTACAGCAGGATAACATTTCAACTTGTAAAAACCGATGGGATGTGATCAGGTTTCTCCTTTTGGACATTGGAACACTTAGGAGTTGGCGTTGGGTCCCTTCTTCTTTCCGAAGGTGGGCACCACGTTCACAAAGCGCCTGTTGTACTGGATGCGACGCTTAGCACGGCCagtcctctttttcttcttctcctgcttGTCAACCTAGACAACATGACAGGAAGAGACATGTTATTTCTCTAAGATCATAATGTATTTTAAACTAGCTTAtcagaaacagaaaatacacaaGCCAATTTTATTCTGAATGCTATTCATGTTCATAAGCAGCCTGCCAGCTACCTCCAGGGTGCAGTGCTCTGAGACACCACAGGATGCCAGGCAAGCATCATCCTCCAGTGGGCTACCAGCAAGCAACAGCACCTGATCCTCAACCAGGAGACCCTCCAGATCCTGGACATGGGCCTGAGAGACGCACCAAAGTATTGGAGTTTTTATTCAAACCAAAGCCATGTTAAACCATTACTAAAGGGCACATATAGATAACTGAAAACAGCAATGCAGTCAAGTTATACAACTATTTCGAGATAAGAGGTGGTCTGGTGTATTCTCATCAATTTGTAATATTTGTACCTTGATCTGTCCAACAGTCTCCTGTCCGGTCACCTCAAGGGTGTGAGTGTTCTGGGCACGCAAGAAGAGCTGCATCTTGATGCTGGAAGAAAGCACCGAAGAGCCAAGCGACTTTAGTCATTATCAGTGTTTCTACTGCGGAAATCAGCTTGAGGCGTTGGTATTATTTGTGACAGTAAACATTGGTCACCAAGCCCGCCACGTTGTGCCAGTGTCTGATTGTTACGTAGTTAATTTTGACGTGGAAATACACTTACAATGTATACCGAGTCACAAAACGGGCAACTTAAATACTGACGAGAAGCAGAACATGCTGGGAGCTGGAACAGACCAGTCTCTCTCTCGGTAATTTGCTAATGCTATGCTAGCTTAACTAGCCGCATGGGGCACACGTTTCATGAAGTCGCTTGAAAACACGTGAAATTTGTTCTAACTGTTCAAATAAACAAATCACTTGAGATAAATGATGATATAGATAATACATTCGCATACCAAAACATTCCAGGTTTTGTCATAATTATGGATTTTCACTTAAATTGCACAGGCCTTACCTCGTTTGATGCTAGTCGTTCAACGCTAGGCATAGAAAGGGCTGTATAAGGGCCGACACTGCGCATGTGCGGATTTACGTAACCATGTCGAAAGCAGTGGCCACGCCCACCACGCTATGGAGGTTGAAGGTGATGCGGTTAATGGACGATCACTCGTCTTTTTCGTTGATTTAATCGGCAACAACTCTACGTTTCACTTAATCACGTGCAATttgttcaatatatatatattttaaactcCGTGTGTCGCATGTAACACAAGCTCCACCCACCTCTGGAAAGTTAGGACCAATCATTAAACTTTCTGCCCAACTAAAGGAGCTGTGGCTCGAGCAGGCCTAGGTTTATTTGTGCGCTTTTAGTTTCTATGGATTACTTTCTTCACATTACTCCGCAGTCTAACATTAATTTTATTAAGTCACTGTTG
>TU249656
CTTTAATTGCAAGATACACCACACTGAGTTCTCTTTTGTCCAAGCCAAATTTATTATTCTGTACAGCAGGATAACATTTCAACTTGTAAAAACCGATGGGATGTGATCAGGTTTCTCCTTTTGGACATTGGAACACTTAGGAGTTGGCGTTGGGTCCCTTCTTCTTTCCGAAGGTGGGCACCACGTTCACAAAGCGCCTGTTGTACTGGATGCGACGCTTAGCACGGCCagtcctctttttcttcttctcctgcttGTCAACCTAGACAACATGACAGGAAGAGACATGTTATTTCTCTAAGATCATAATGTATTTTAAACTAGCTTAtcagaaacagaaaatacacaaGCCAATTTTATTCTGAATGCTATTCATGTTCATAAGGACTagacaacacaaaaaacaatagAGTTGTTTGTTGCATCTGTATACTGACCTCCCAGCAGCCTGCCAGCTACCTCCAGGGTGCAGTGCTCTGAGACACCACAGGATGCCAGGCAAGCATCATCCTCCAGTGGGCTACCAGCAAGCAACAGCACCTGATCCTCAACCAGGAGACCCTCCAGATCCTGGACATGGGCCTGATCTGTCCAACAGTCTCCTGTCCGGTCACCTCAAGGGTGTGAGTGTTCTGGGCACGCAAGAAGAGCTGCATCTTGATGCTGGAAGAAAGCACCTCGTTTGATGCTAGTCGTTCAACGCTAGGCATAGAAAGGGCTGTATAAGGGCCGACACTGCGCATGTGCGGATTTACGTAACCATGTCGAAAGCAGTGGCCACGCCCACCACGCTATGGAGGTTGAAGGTGATGCGGTTAATGGACGATCACTCGTCTTTTTCGTTGATTTAATCGGCAACAACTCTACGTTTCACTTAATCACGTGCAATttgttcaatatatatatattttaaactcCGTGTGTCGCATGTAACACAAGCTCCACCCACCTCTGGAAAGTTAGGACCAATCATTAAACTTTCTGCCCAACTAAAGGAGCTGTGGCTCGAGCAGGCCTAGGTTTATTTGTGCGCTTTTAGTTTCTATGGATTACTTTCTTCACATTACTCCGCAGTCTAACATTAATTTTATTAAGTCACTGTTG

Function

NR:

description
PREDICTED: HEAT repeat-containing protein 5B isoform X2

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU249654 True 1669 lncRNA 0.43 2 14699684 14702181
TU249656 False 1104 lncRNA 0.45 4 14699684 14702181

Neighbor

gene id symbol gene type direction distance location
arf6a arf6.2,arf6,arf6a,LOC106518576,LOC104956700,LOC101063995,LOC106608083,LOC105893149 coding downstream 19591 14677540 ~ 14680093 (-)
actr10 actr10 coding downstream 107449 14584030 ~ 14592235 (-)
cipcb cipc,LOC101061969 coding downstream 133153 14561407 ~ 14566531 (-)
znf410 znf410,LOC102793462 coding downstream 139224 14548038 ~ 14560460 (-)
LOC120547074 samd15,LOC102792272,LOC106518567 coding downstream 170331 14525235 ~ 14529353 (-)
fkbp3 fkbp3 coding upstream 1286 14703467 ~ 14706436 (-)
LOC120546409 mdga2 coding upstream 89932 14792113 ~ 14929662 (-)
wdr20b wdr20,LOC104961916,LOC103369949,LOC101068631,LOC101475300,LOC102799324,LOC101173269 coding upstream 419648 15121829 ~ 15128493 (-)
LOC120546952 LOC103369945,LOC104955612 coding upstream 497248 15199429 ~ 15201090 (-)
slc25a47a slc25a47 coding upstream 569997 15272178 ~ 15276579 (-)
G184360 NA non-coding downstream 9744 14689306 ~ 14689940 (-)
G184356 NA non-coding downstream 22624 14671894 ~ 14677060 (-)
G184346 NA non-coding downstream 43437 14655657 ~ 14656247 (-)
G184306 NA non-coding downstream 206116 14491099 ~ 14493568 (-)
G184295 NA non-coding downstream 260729 14432231 ~ 14438955 (-)
G184381 NA non-coding upstream 339128 15041309 ~ 15041536 (-)
LOC120546290 NA non-coding upstream 361657 15063838 ~ 15068284 (-)
G184404 LOC103369948,LOC101169258 non-coding upstream 430036 15132217 ~ 15138715 (-)
G184406 LOC107378075,LOC100701982,LOC107704376,LOC101474541 non-coding upstream 433288 15135469 ~ 15138313 (-)
G184417 LOC101473650,LOC102776111,LOC103369946,LOC102310296 non-coding upstream 466955 15169136 ~ 15173640 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 32083 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 86738 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 201314 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 1208541 13473683 ~ 13491143 (-)
fkbp1b fkbp1b other downstream 1231619 13458602 ~ 13468065 (-)
rps29 NA other upstream 408059 15110240 ~ 15111479 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 1086645 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 1363673 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 1444409 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 1788469 16490650 ~ 16517874 (-)

Expression


Co-expression Network