LOC120546290


Basic Information

Item Value
gene id LOC120546290
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15063838 ~ 15068284 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU249700
GTATTGCACACGAAAAACCCGAAGGAGAGAAGCCAGATGAAATTAATATCCAGagataaatatttgtgtgtcaAACAGTAGGCTAAGATGCGGCCATTTTATTGACACTGTAAATGGACAGTAGCCTACTCTggacaacaaaactgttaagTGAAGTTTGAAAGGAGTTGGACTCTGGCTTAAGTCCAAACTAATTTAAAAGTGAACTAACCTACATGACTGAAATTAAACAACTGGGAGAGTTAGCTTTTTTTGCAGTAACGTTActgacattagctaacgttacttttaGTTTGCTAGCACATGCAGCGTTGGAGGCCAATGGAGGGTGGAAATGACGATGTCTGTCAACAACTCCACAGAAGTACCATGGCAGCACCAAGTGCAGAAGTTAGCTACATGACATGGCTATTTTGACCACTTCGCCTCCATGAATGGAAGAAGAGACGACTTTAGCTTCAGAGAGTGATGATCATGCCATGCACAGTCCCAATCTGGTCAGGTGTACTCAAGGCTGAGCACTAAAGAGGAGGAGGGCTAATGGGCTATTTCTCACCTCTGTAGAGCATAACTCTGCCATCTGCTGCAGGGAGTCTCTCTTAGCGCCTCGCTCCTCTCTCTGGAACAGCGAATGGACAAATGGCAACCTGAGAGTCGCACTCAGCAGCTGAATACAGGACTGGGCGCACATGGACTTATTGCTATTTTCCCTTGGCTCATCTTGTCCCTCCGCCACTTCCTCTCACCACCTTTTGTCAATTTTACTTGTATAGCCCAATGTTGCGAATCACAAATTTGCCTGaaggggctttacaatctgtacggGATACAACACTTTCTGAACCCATGATTAGGATGAGGAAGAACTCCTCCAGAAAAAAACTTAAACGGGGACGAAAAGGTGGAAGAAACCTCAGGAAAAGCCACAGAGCAGGGGTCCCTCTTctaggacagacagacatgcaacGGATGTCTTTCTCTGTTGCTCTGACTTTTCTTACTGTGTCCTCCAAAAAATATTGACACAGTCGCATGCATGCACAAGCAAACTGATGCTTCTTCCAAACTTGTTTGAGTTTTTTAAGAAATTAAATGCCTAATTAAAAGTCTTGAAACTACATAGACTGCAACCTTTTTCTGACAAAAGCATCACCCATCTAGAAATACCCAAAACAACTTGCAGTACATTTATCATTTGACGGTAAGTGGGTGTTCCTGGGTGTTTTTGTCGCTGTGTCACGTTTGAGCACTCGACTACAAAACTGGGTGAACCCAACTTCACAACATGCTCCTCACTTCTCCATCCAGTAATTTTCTCCAACTTGTTATAGACGTCTGAACCCTGGCCCCATGCTAAAATAAGCCGAGGCAGATCAGGCGTCCGCTTTGTGCCTCGGCCCACTCTGTTAAGTCTTCTGCGGTGAGGACAGATAAGCAAACCTGGGAGAGATGCTATCGCACCGCTGGGTTAAAGAAACTGACAACTCCATCACCCCTACTCAGATCAGAAGGGAACTGAAGAGCAATGCA
>XR_005636854.1
GCACACGAAAAACCCGAAGGAGAGAAGCCAGATGAAATTAATATCCAGagataaatatttgtgtgtcaAACAGTAGGCTAAGATGCGGCCATTTTATTGACACTGTAAATGGACAGTAGCCTACTCTggacaacaaaactgttaagTGAAGTTTGAAAGGAGTTGGACTCTGGCTTAAGTCCAAACTAATTTAAAAGTGAACTAACCTACATGACTGAAATTAAACAACTGGGAGAGTTAGCTTTTTTTGCAGTAACGTTActgacattagctaacgttacttttaGTTTGCTAGCACATGCAGCGTTGGAGGCCAATGGAGGGTGGAAATGACGATGTCTGTCAACAACTCCACAGAAGTACCATGGCAGCACCAAGTGCAGAAGTTAGCTACATGACATGGCTATTTTGACCACTTCGCCTCCATGAATGGAAGAAGAGACGACTTTAGCTTCAGAGAGTGATGATCATGCCATGCACAGTCCCAATCTGGTCAGGTGTACTCAAGGCTGAGCACTAAAGAGGAGGAGGGCTAATGGGCTATTTCTCACCTCTGTAGAGCATAACTCTGCCATCTGCTGCAGGGAGTCTCTCTTAGCGCCTCGCTCCTCTCTCTGGAACAGCGAATGGACAAATGGCAACCTGAGAGTCGCACTCAGCAGCTGAATACAGGACTGGGCGCACATGGACTTATTGCTATTTTCCCTTGGCTCATCTTGTCCCTCCGCCACTTCCTCTCACCACCTTTTGTCAATTTTACTTGTATAGCCCAATGTTGCGAATCACAAATTTGCCTGaaggggctttacaatctgtacggGATACAACACTTTCTGAACCCATGATTAGGATGAGGAAGAACTCCTCCAGAAAAAAACTTAAACGGGGACGAAAAGGTGGAAGAAACCTCAGGAAAAGCCACAGAGCAGGGGTCCCTCTTctaggacagacagacatgcaacGGATGTCTTTCTCTGTTGCTCTGACTTTTCTTACTGTGTCCTCCAAAAAATATTGACACAGTCGCATGCATGCACAAGCAAACTGATGCTTCTTCCAAACTTGTTTGAGTTTTTTAAGAAATTAAATGCCTAATTAAAAGTCTTGAAACTACA

Function

GO: NA

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU249700 True 1530 lncRNA 0.45 2 15063838 15068284
XR_005636854.1 False 1115 lncRNA 0.44 2 15064248 15068279

Neighbor

gene id symbol gene type direction distance location
LOC120546409 mdga2 coding downstream 134176 14792113 ~ 14929662 (-)
fkbp3 fkbp3 coding downstream 357402 14703467 ~ 14706436 (-)
arf6a arf6.2,arf6,arf6a,LOC106518576,LOC104956700,LOC101063995,LOC106608083,LOC105893149 coding downstream 383745 14677540 ~ 14680093 (-)
actr10 actr10 coding downstream 471603 14584030 ~ 14592235 (-)
cipcb cipc,LOC101061969 coding downstream 497307 14561407 ~ 14566531 (-)
wdr20b wdr20,LOC104961916,LOC103369949,LOC101068631,LOC101475300,LOC102799324,LOC101173269 coding upstream 53545 15121829 ~ 15128493 (-)
LOC120546952 LOC103369945,LOC104955612 coding upstream 131145 15199429 ~ 15201090 (-)
slc25a47a slc25a47 coding upstream 203894 15272178 ~ 15276579 (-)
syndig1l LOC108231752,LOC106536771 coding upstream 279476 15347760 ~ 15384587 (-)
ino80 ino80 coding upstream 537784 15606068 ~ 15652295 (-)
G184381 NA non-coding downstream 22302 15041309 ~ 15041536 (-)
G184354 NA non-coding downstream 361657 14699684 ~ 14702181 (-)
G184360 NA non-coding downstream 373898 14689306 ~ 14689940 (-)
G184356 NA non-coding downstream 386778 14671894 ~ 14677060 (-)
G184346 NA non-coding downstream 407591 14655657 ~ 14656247 (-)
G184404 LOC103369948,LOC101169258 non-coding upstream 63933 15132217 ~ 15138715 (-)
G184406 LOC107378075,LOC100701982,LOC107704376,LOC101474541 non-coding upstream 67185 15135469 ~ 15138313 (-)
G184417 LOC101473650,LOC102776111,LOC103369946,LOC102310296 non-coding upstream 100852 15169136 ~ 15173640 (-)
G184420 NA non-coding upstream 105427 15173711 ~ 15174119 (-)
G184452 LOC103369942,LOC106518591 non-coding upstream 214965 15283249 ~ 15288885 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 396237 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 450892 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 565468 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 1572695 13473683 ~ 13491143 (-)
fkbp1b fkbp1b other downstream 1595773 13458602 ~ 13468065 (-)
rps29 NA other upstream 41956 15110240 ~ 15111479 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 720542 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 997570 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 1078306 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 1422366 16490650 ~ 16517874 (-)

Expression


Co-expression Network