G184628 (LOC104949332,LOC106633454,LOC101477798,LOC102792991)


Basic Information

Item Value
gene id G184628
gene name LOC104949332,LOC106633454,LOC101477798,LOC102792991
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16399438 ~ 16404077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250010
CCTGGTAATGATGGATAACATAACTGCTCTTGAACCAACACTGTGCAGCATTAATAGTACTTAAGCATATTCAGTGTGACATAATCCGCCGTGTCATATATCAAATATCTGTGTTTAGAGGACAATCTGTAAATCGTCGCATATTTTACCATGCAGCTCCTCAGGTATGACTGAACCAGCAGATGTGTTAAAGGTGGAGGATCAATTAGCAACTGACATTGCTTGAGCTGCCACTGCACTGACATGCAGGGATATCCATAGGcttgacatgcagcaaataaTCAACACCCTGAAATATGAGCCATCGTAAATGCAAAAATGCAATGCTGCAATagagagagacgagtctttATATCAAAGCACTGTCATATTTATtaccaagaagaaaaaaaaaaaacattaaaggcATATCATAGTCATTTGTCACAACTGTTATTTGAACACCTTAAATATATCACTTTGACAATATGATACATTAAAACACACTGTTGTTGACAGTTAGCAGATTGCTGCTGGGAGCACAGCCGCGACTTAATCTATTCCTACTGGTGGCCAGGTTGAATTTGATTCAACAGGGCAACCATGAGGATTAAACACATGAGCATGCACCCTCAAACTGGGGCTGCATGCAAAATCTCATTATACAGAAAAGACCTgaaattcaatacaaaaaagaGGATAAGGGGGTAAAAGCAGCTAAGCAATATGTTGATGTGTTGGTAAAGGTTTCATCACAGAAGAAGCAAAAAGCCACAGCAACACTGGAGAATGTCGTGGATGTGTTTTATCTGGAACATGTCATCAAGATGAAATTAAGCATTTCTTTAACTCTCTTAAAGCACTTTGTTTCACAGAAAAGTCCTTACTatttacacagagagagagggtttCCCTGGAGGAAGGGATCAAGCTTTGGTGAAATGGAAAGGTATCACATAATGACTGTCTCAGTCTGAAGAGAATAGGAAACGAGAGGCCGGTGCTTCAGGACGGGACTTGGGGTTCTGGTCATGGGGCTAGGGGGGCGAGTCAGGGGACTGGGGGGCCTGTACATTGGGCCTGATGGGGTGGTGATGATGGCAGTAGGGGTGCGGCCGGCCCACCTGGAAGGAGGTCGCTGATTGGCTGGCCGCGCAGGACGAGAGAAGCTCTTTTTAGGATTGGCTGGGGACAACTTGGCTGGGTTTACCTGCTGTGGATCCTGTCTGTAAGCTGTGTGTCCTGCTCTGGGACTGGAGCTGTACTCATGTTGGATGTCCAGCATGTCCAGCAGCTCAATAAGTCCTTCATCCTTCACTCTGCCACAACCTAGCAACTCCTGTCCCACTAGCCCACCCCTCTGGATCTTCTGAGCTCCAGAGGAAGCACTTGAGACCCTGTAGTCCATTTTGGGCTCCACATGTTGGGGTGCAGGCTTCCttgctccctctctgtctgcccCACTGTTAGCCCTGGGTCTAATCTTTGGGCTCCCTGCCACCTGTGATCTCCTCTGGGACTGCTGAGGACTCCGCTGGGCCCCTTTAGAACCGCTGTAGCCTCCTCTGTGATCCTTGTAGTTCTGTCTACCAGAGTCTGATACTAACCCCCATTCTTGGCCGGGCTCTATCTCTGCTGTCAGCACACCGGAATCTGATTGGCATTTCTGGGCAGGCACACGCATGGGCACCCTGCCGGAGACTACAGTGGCTCCCAGAGCTCTGCGCTGACAGCTCGGGGTGGGACACTTTGGCTCTTGTGCCAGCCCCTGATTGGTCACCACCCCTGATTCGGTGAGCATTTTGCCCTCGTTTTCCTGAAGCATGGCTCCAAACTTCCTGAGAACAGAGGGGCTGCCGCACTTCCTATCTCCCAGGACGCCAGGACCGTAGGACTTCCTGTCTGGAGCAGGAGATTCAGCTGTTGTTATGGGGAGCTGTGAGCGTGGTTGTACAGCAGGAGCATCCCTTTGTCCAAGAGGGGGCTTGGcacctgtgttttctttgttgGGGGAACTCTCTCTGCGGGGGGAGCTCTTCATGTGAGACACTTGGTTCTTCCTGTTTTCAGTGTCCTCAAAACTGCCCACAAACTGCTCTTCACCAAGCCTTTCATTTCCAGAATTTTTTCTGATCTCTGATCCCGGGCTCACCTTGATCGTGTCACTGAAGCGCACGTGGCGAGCTCCATTGTTCTTCCGGCTCATTTGCTTCCCCTGCCCCAAATAATCCTGCAACAAGTCTCCAATCTCTGAGTTGGCGTGGCAGTAACCGTAGCCATTTTGATGACTCGCAGGGTAGCTGTACCCACTGGGGCTATAGTTACAGCCGTTACTATAGTGATGTGGCACAGGTATAGCTCCAGGGTGATTCTTGCTATGATGGCTGGGCGCAAAAAGACCATTGCCATTTTTCTGGTGGTCAGTAGTGATATCGTTTGCTCCTCTGCGGGCCTGAACTTCATTGTACaa
>TU250011
gaagcagaaaaaagCCTACCTGCTGTGGATCCTGTCTGTAAGCTGTGTGTCCTGCTCTGGGACTGGAGCTGTACTCATGTTGGATGTCCAGCATGTCCAGCAGCTCAATAAGTCCTTCATCCTTCACTCTGCCACAACCTAGCAACTCCTGTCCCACTAGCCCACCCCTCTGGATCTTCTGAGCTCCAGAGGAAGCACTTGAGACCCTGTAGTCCATTTTGGGCTCCACATGTTGGGGTGCAGGCTTCCttgctccctctctgtctgcccCACTGTTAGCCCTGGGTCTAATCTTTGGGCTCCCTGCCACCTGTGATCTCCTCTGGGACTGCTGAGGACTCCGCTGGGCCCCTTTAGAACCGCTGTAGCCTCCTCTGTGATCCTTGTAGTTCTGTCTACCAGAGTCTGATACTAACCCCCATTCTTGGCCGGGCTCTATCTCTGCTGTCAGCACACCGGAATCTGATTGGCATTTCTGGGCAGGCACACGCATGGGCACCCTGCCGGAGACTACAGTGGCTCCCAGAGCTCTGCGCTGACAGCTCGGGGTGGGACACTTTGGCTCTTGTGCCAGCCCCTGATTGGTCACCACCCCTGATTCGGTGAGCATTTTGCCCTCGTTTTCCTGAAGCATGGCTCCAAACTTCCTGAGAACAGAGGGGCTGCCGCACTTCCTATCTCCCAGGACGCCAGGACCGTAGGACTTCCTGTCTGGAGCAGGAGATTCAGCTGTTGTTATGGGGAGCTGTGAGCGTGGTTGTACAGCAGGAGCATCCCTTTGTCCAAGAGGGGGCTTGGcacctgtgttttctttgttgGGGGAACTCTCTCTGCGGGGGGAGCTCTTCATGTGAGACACTTGGTTCTTCCTGTTTTCAGTGTCCTCAAAACTGCCCACAAACTGCTCTTCACCAAGCCTTTCATTTCCAGAATTTTTTCTGATCTCTGATCCCGGGCTCACCTTGATCGTGTCACTGAAGCGCACGTGGCGAGCTCCATTGTTCTTCCGGCTCATTTGCTTCCCCTGCCCCAAATAATCCTGCAACAAGTCTCCAATCTCTGAGTTGGCGTGGCAGTAACCGTAGCCATTTTGATGACTCGCAGGGTAGCTGTACCCACTGGGGCTATAGTTACAGCCGTTACTATAGTGATGTGGCACAGGTATAGCTCCAGGGTGATTCTTGCTATGATGGCTGGGCGCAAAAAGACCATTGCCATTTTTCTGGTGGTCAGTAGTGATATCGTTTGCTCCTCTGCGGGCCTGAACTTCATTGTACaa
>TU250012
AGTTAGCAGGGagaaaaaaaaaaaacattaaaggcATATCATAGTCATTTGTCACAACTGTTATTTGAACACCTTAAATATATCACTTTGACAATATGATACATTAAAACACACTGTTGTTGACAGTTAGCAGATTGCTGCTGGGAGCACAGCCGCGACTTAATCTATTCCTACTGGTGGCCAGGTTGAATTTGATTCAACAGGGCAACCATGAGGATTAAACACATGAGCATGCACCCTCAAACTGGGGCTGCATGCAAAATCTCATTATACAGAAAAGACCTgaaattcaatacaaaaaagaGGATAAGGGGGTAAAAGCAGCTAAGCAATATGTTGATGTGTTGGTAAAGGTTTCATCACAGAAGAAGCAAAAAGCCACAGCAACACTGGAGAATGTCGTGGATGTGTTTTATCTGGAACATGTCATCAAGATGAAATTAAGCATTTCTTTAACTCTCTTAAAGCACTTTGTTTCACAGAAAAGTCCTTACTatttacacagagagagagggtttCCCTGGAGGAAGGGATCAAGCTTTGGTGAAATGGAAAGGTATCACATAATGACTGTCTCAGTCTGAAGAGAATAGGAAACGAGAGGCCGGTGCTTCAGGACGGGACTTGGGGTTCTGGTCATGGGGCTAGGGGGGCGAGTCAGGGGACTGGGGGGCCTGTACATTGGGCCTGATGGGGTGGTGATGATGGCAGTAGGGGTGCGGCCGGCCCACCTGGAAGGAGGTCGCTGATTGGCTGGCCGCGCAGGACGAGAGAAGCTCTTTTTAGGATTGGCTGGGGACAACTTGGCTGGGTTTACCTGAGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250010 True 2449 lncRNA 0.49 4 16400908 16404077
TU250011 False 1279 lncRNA 0.54 3 16402202 16404077
TU250012 False 824 TUCP 0.45 2 16399438 16402103

Neighbor

gene id symbol gene type direction distance location
LOC120547268 rnf146 coding upstream 8808 16387758 ~ 16390630 (+)
LOC120547267 NA coding upstream 12660 16384271 ~ 16386778 (+)
tpd52l1 tpd52l1 coding upstream 24224 16357559 ~ 16375214 (+)
rnf217 rnf217,LOC106571519 coding upstream 46783 16340938 ~ 16352655 (+)
med23 med23 coding upstream 272524 16109352 ~ 16126914 (+)
LOC120546559 LOC102791590 coding downstream 82937 16487014 ~ 16490639 (+)
pgm3 pgm3 coding downstream 114367 16518444 ~ 16523666 (+)
ccnc ccnc coding downstream 123912 16527989 ~ 16534031 (+)
faxca LOC104925628,LOC104963907,LOC103380784,LOC102789719,LOC101473580,LOC102289837 coding downstream 132234 16536311 ~ 16544495 (+)
tmem63a LOC104944870 coding downstream 184773 16588850 ~ 16599462 (+)
G184618 NA non-coding upstream 42890 16291211 ~ 16356548 (+)
G184584 NA non-coding upstream 351757 16045809 ~ 16047681 (+)
G184540 NA non-coding upstream 471776 15926071 ~ 15927662 (+)
G184561 NA non-coding upstream 509853 15889365 ~ 15889585 (+)
G184526 sel1l,LOC104966051,LOC107585782,LOC107721334 non-coding upstream 600644 15797815 ~ 15798794 (+)
G184633 LOC101069623,LOC100711363,LOC102312356,LOC101478077,LOC102202636 non-coding downstream 7599 16411676 ~ 16413501 (+)
LOC120546561 NA non-coding downstream 89117 16493194 ~ 16516333 (+)
G184796 NA non-coding downstream 191863 16595940 ~ 16610380 (+)
G184851 naga,LOC104944830 non-coding downstream 320800 16724877 ~ 16726392 (+)
G184948 NA non-coding downstream 529619 16933696 ~ 16956864 (+)
nkain2 nkain2 other upstream 7587 16248094 ~ 16391851 (+)
cenpw NA other upstream 17582 16379479 ~ 16381856 (+)
LOC120546249 NA other upstream 431315 15914586 ~ 15968123 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other upstream 679806 15694944 ~ 15719632 (+)
rhov rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886 other upstream 735777 15660573 ~ 15663661 (+)
vegfab vegfa other downstream 267509 16671586 ~ 16686079 (+)
si:ch211-57i17.1 LOC103363786 other downstream 361468 16765545 ~ 16779935 (+)
G184859 NA other downstream 421617 16825694 ~ 16833314 (+)
G184996 sec63 other downstream 889577 17293654 ~ 17295701 (+)
map7b map7,LOC107374525 other downstream 937760 17341837 ~ 17375059 (+)

Expression


Co-expression Network