LOC120546331


Basic Information

Item Value
gene id LOC120546331
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16125385 ~ 16145169 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250105
CCTTGATTGACAGCTCCATCGCTCTCCTGTTGCTAATGTTCGGATGGGACAAACTCCTGAAGGACTTGTCACCTGTATTTTCCCTGTGGGTCGTTCGTTTCACAGGAATTCTAAAACGAGGACGGTGTCACACGAAGCTCCCCACACAGAAAGCGTCATTTACTGAGAGGAGGAGGTCTAAAGCAGAAGTGATGAAGGCAGCGTCATACCTGTTTCAGCGGCAGCACTGAGACTCACagtataaACTCCGTTCCATCTGGCACCATCTGCCCTAATGAACCCATGTATTTGTGTGAATATGTGCTTTGAAAAACAAAGTAGGTGTGTGCGCGTGCTGTGCGGAAGAGGGGGAGGCGACGGCAGAGGACGAAGAGAGTGAGGAGGTGGGGGGCTGaggggtggaggaggaagtggaggCGACGTTGGCAGCTGCTGATGAAGTCTCGATCTTGCTGCTGTGTGTGATGAAGCGCAGTCGCAGCTTCATGGCCGGACGTAAGGTCATGATGATTTTCTCCACCTGGAGAAAGAGAAACGGAGAGTTAAAAGCGAAGAACGGATGTGTATACACAAATGTAGACTGGCAGCAATGTATTGATAACtacaaaaaaagagtaaaagtaAGGTAGAGAAAGAAACTGATCAGTTTAGGAAAATTGACTAAATGCATGAATCTGATTTTGGTTTAAACTGACCTCTACAGTTAATTTCCTGAAGCAGTGGTATAATTACAGTACAGTAATTACCAGGTCAATACGTATCACATTCATTTATGTAACATCTCTTGTTTTGAATCGCATCACCCAAAATACGACACACATAGCTTGAGTTAAGGTTTTGTCTATTAAATTAATTACTTGAAAAGTCCATTTAAATACACATGCCCAAGCCTAAAGCCCAAGTGGAGCTACAGTTTCATCTTTAATTAACTGTGGTGGCAGGAGGTCTGGACACGGCTGGGGAGCCAGCTCGTCTTGCTGCACAGGAGGTGACAGATTCACACTAAAAATGGAAGATGAAAACAAAACCGTCTCCTGAGGAGCTGCAAGTTCACAGATGTCATCTTACTTGAAGTCCGGGTGACGAAGGTCTCcatttttagctttttcatcagtttgttattttattgtattaactTGTTACCGTCTAAGTTTTGAAATGTTTGGTCAGATTTATGGttaattttccattttaatACAAGACACGTTCTCACCTGCTCCTTCACGCTGTCTCCAGTGTACATGTATTTGATGTGATAGAGGAAGTCACAGATTGGGTCCATGTAGCTGAGATGTTGGCAGTGTTGGTCGACCGCCTGGAGCATCTCGTAGAAGGCCACG
>XR_005636864.1
TGACAGCTCCATCGCTCTCCTGTTGCTAATGTTCGGATGGGACAAACTCCTGAAGGACTTGTCACCTGTATTTTCCCTGTGGGTCGTTCGTTTCACAGGAATTCTAAAACGAGGACGGTGTCACACGAAGCTCCCCACACAGAAAGCGTCATTTACTGAGAGGAGGAGGTCTAAAGCAGAAGTGATGAAGGCAGCGTCATACCTGTTTCAGCGGCAGCACTGAGACTCACagtataaACTCCGTTCCATCTGGCACCATCTGCCCTAATGAACCCATGTATTTGTGTGAATATGTGCTTTGAAAAACAAAGTAGGTGTGTGCGCGTGCTGTGCGGAAGAGGGGGAGGCGACGGCAGAGGACGAAGAGAGTGAGGAGGTGGGGGGCTGaggggtggaggaggaagtggaggCGACGTTGGCAGCTGCTGATGAAGTCTCGATCTTGCTGCTGTGTGTGATGAAGCGCAGTCGCAGCTTCATGGCCGGACGTAAGGTCATGATGATTTTCTCCACCTGGAGAAAGAGAAACGGAGAGTTAAAAGCGAAGAACGGATGTGTATACACAAATGTAGACTGGCAGCAATGTATTGATAACtacaaaaaaagagtaaaagtaAGGTAGAGAAAGAAACTGATCAGTTTAGGAAAATTGACTAAATGCATGAATCTGATTTTGGTTTAAACTGACCTCTACAGTTAATTTCCTGAAGCAGTGGTATAATTACAGTACAGTAATTACCAGGTCAATACGTATCACATTCATTTATGTAACATCTCTTGTTTTGAATCGCATCACCCAAAATACGACACACATAGCTTGAGTTAAGGTTTTGTCTATTAAATTAATTACTTGAAAAGTCCATTTAAATACACATGCCCAAGCCTAAAGCCCAAGTGGAGCTACAGTTTCATCTTTAATTAACTGTGGTGGCAGGAGGTCTGGACACGGCTGGGGAGCCAGCTCGTCTTGCTGCACAGGAGGTGACAGATTCACACTAAAAATGGAAGATGAAAACAAAACCGTCTCCTGAGGAGCTGCAAGTTCACAGATGTCATCTTACTTGAAGTCCGGGTGACGAAGGTCTCcatttttagctttttcatcagtttgttattttattgtattaactTGTTACCGTCTAAGTTTTGAAATGTTTGGTCAGATTTATGGttaattttccattttaatACAAGACACGTTCTCACCTGCTCCTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250105 True 1340 lncRNA 0.44 4 16125385 16145169
XR_005636864.1 False 1217 lncRNA 0.44 4 16125501 16145162

Neighbor

gene id symbol gene type direction distance location
il20ra NA coding downstream 16813 16102053 ~ 16108572 (-)
ehd3 LOC103369145,LOC104927375,LOC100697227,LOC101483142,LOC101071455,LOC105919213,LOC103457740 coding downstream 26663 16082024 ~ 16098722 (-)
stum stum,LOC102783313 coding downstream 63478 16045919 ~ 16061907 (-)
epb41l2 epb41l2,LOC106936101,LOC103373577 coding downstream 145185 15921621 ~ 15980200 (-)
tmem244 tmem244 coding downstream 205745 15841146 ~ 15919640 (-)
LOC120547308 NA coding upstream 43831 16189000 ~ 16195106 (-)
LOC120547182 trdn,LOC103371166 coding upstream 63090 16208259 ~ 16231901 (-)
hddc2 hddc2 coding upstream 230717 16375886 ~ 16379169 (-)
LOC120547270 LOC104949332 coding upstream 256093 16401262 ~ 16409291 (-)
LOC120547269 soga3,LOC102312356,LOC102202636,LOC101478077 coding upstream 264130 16409299 ~ 16415197 (-)
G184707 NA non-coding downstream 24653 16100144 ~ 16100732 (-)
G184705 NA non-coding downstream 60471 16064671 ~ 16064914 (-)
G184702 coq8a,LOC102220701,LOC103144166 non-coding downstream 83170 16037750 ~ 16042215 (-)
G184699 LOC107390449 non-coding downstream 91655 16025218 ~ 16033730 (-)
G184696 NA non-coding downstream 109850 16012500 ~ 16015535 (-)
G184730 NA non-coding upstream 105028 16250197 ~ 16251869 (-)
G184731 NA non-coding upstream 146221 16291390 ~ 16356567 (-)
G184755 NA non-coding upstream 234276 16379445 ~ 16382479 (-)
G184762 NA non-coding upstream 288932 16434101 ~ 16434513 (-)
G184801 NA non-coding upstream 305585 16450754 ~ 16535319 (-)
LOC120546224 NA other downstream 57076 16065854 ~ 16068309 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 329747 15788826 ~ 15795638 (-)
rps29 NA other downstream 1013906 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 1457784 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 1512439 14571380 ~ 14612946 (-)
LOC120546332 akap7 other upstream 1421 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 345481 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 680483 16825652 ~ 16835983 (-)
LOC120547341 NA other upstream 1121190 17266359 ~ 17269634 (-)
tbpl1 tbpl1 other upstream 1477955 17623124 ~ 17631351 (-)

Expression


Co-expression Network