LOC120546224


Basic Information

Item Value
gene id LOC120546224
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16065854 ~ 16068309 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250126
AGACAGACACCTTTAagaaaacaacataaacaacagAAGCCAAtcaagatgatgatgatgatgaagaaccCCGTCATTCTGGTGACCTGTGCCTTACTTTTCTCATCTCTTGCTGTCCTGGCACATCAAGTTTATCTCTTCAAGGCTGCGTACAGACCGGGTGCTGCGCTACGAATACACAGACAAGCGGTGTTCAATGGATGGTGTCTTCTTTACGATGAAGAGTGGTGCTCAAATGTGTGCCGACCCATCTCTGCTGTGGGTCAAGAACCTCATCAAGGCCAAAGACAGGCTCCCATCCAACTGACCCAATGTGTGGTTTAACACCACACTTAACAGCTCATTGAGCCGAGCCCAAG
>XM_039781003.1
ATAAAAGTGAGGGGCTATGAGTAAAGCGAACAGAAAGGAGACAGACACCTTTAagaaaacaacataaacaacagAAGCCAAtcaagatgatgatgatgatgaagaaccCCGTCATTCTGGTGACCTGTGCCTTACTTTTCTCATCTCTTGCTGTCCTGGCACATCAAGGCAGTTTTGGTCCAAATGAGTGCTGTTTTCAGTTTATCTCTTCAAGGCTGCGTACAGACCGGGTGCTGCGCTACGAATACACAGACAAGCGGTGTTCAATGGATGGTGTCTTCTTTACGATGAAGAGTGGTGCTCAAATGTGTGCCGACCCATCTCTGCTGTGGGTCAAGAACCTCATCAAGGCCAAAGACAGGCTCCCATCCAACTGACCCAATGTGTGGTTTAACACCACACTTAACAGCTCATTGAGCCGAGCCCAAGTGATTTAGCTTCATAACTTTCTCTATTTTTAAAGGTTTTCTATtagcttaaaaataaatataaatcctCAAATGACTTCTTTTTTCATTATCTGTTCTTTTGTGGGTTCAAATGTGGTTTCAATTGATGTATATAAATATTGTTTTCTGATATaataagtttttgtttttttaaatcgtaCATTATTGCCTtaatttctctttgttttaatTCACCATGTAAGACAAACTTTGATCAGAAATAATGAAATTCTTCACTATTGTTTAAAAGGCTGTTAAACAGTAGTGACACTTTAGAGTTGATGTGGTTTCTGGCAGTGAAAGCCACAGGAAACTCAGCTGTGTACCACAGGCTTGGCATAAACAATCACATTTAACTCTTTAATGTGATTGTTTATGCCTATCTTTTAATAGGTCCACGGTAAGCATCCTTGCCCTTGGcctagtttaatatgcaactaaaTTGTATACAATGCATGTAGATGggggtccctgtctgtctctctttcaggtaAGTGGGTCCCTGCAAGAGAGACTTCAGGCACTCTAATTTGCAGTTTGTGTGATGCACCTCTGTGACCAGCAGATGTcgttcttctctcttttctcttctctctgacATTCtatacttttaaatgtttcatatTAGTTTCCAAagccatgtttttttattgctctATGTCGACTGCAGCAAGAATGAGGAATTGTTTAATCTAATGTTAATTGCACTCATGAGAACAGCAGCTCAGTGAGAGCATGTTTGATGTATCTCAACTCAGTTTTTTATCAGCTAAACCATGTGTAATATTGGAGTTATGTACCAAgtcaaatgtaacaacttaaagCCCTCCCAGATGGCTTCTGTCTGGGGGTCAATGCTAAAATTAAACACACTTTGAGTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250126 False 359 lncRNA 0.48 3 16066758 16068271
XM_039781003.1 True 1333 mRNA 0.39 3 16065854 16068309

Neighbor

gene id symbol gene type direction distance location
stum stum,LOC102783313 coding downstream 3947 16045919 ~ 16061907 (-)
epb41l2 epb41l2,LOC106936101,LOC103373577 coding downstream 85654 15921621 ~ 15980200 (-)
tmem244 tmem244 coding downstream 146214 15841146 ~ 15919640 (-)
fkbp6 fkbp6 coding downstream 226338 15831779 ~ 15839516 (-)
arhgap18 arhgap18 coding downstream 235068 15808083 ~ 15830786 (-)
ehd3 LOC103369145,LOC104927375,LOC100697227,LOC101483142,LOC101071455,LOC105919213,LOC103457740 coding upstream 13715 16082024 ~ 16098722 (-)
il20ra NA coding upstream 33744 16102053 ~ 16108572 (-)
LOC120547308 NA coding upstream 120691 16189000 ~ 16195106 (-)
LOC120547182 trdn,LOC103371166 coding upstream 139950 16208259 ~ 16231901 (-)
hddc2 hddc2 coding upstream 307577 16375886 ~ 16379169 (-)
G184705 NA non-coding downstream 940 16064671 ~ 16064914 (-)
G184702 coq8a,LOC102220701,LOC103144166 non-coding downstream 23639 16037750 ~ 16042215 (-)
G184699 LOC107390449 non-coding downstream 32124 16025218 ~ 16033730 (-)
G184696 NA non-coding downstream 50319 16012500 ~ 16015535 (-)
G184668 ctgf non-coding downstream 290368 15772686 ~ 15775486 (-)
G184707 NA non-coding upstream 31835 16100144 ~ 16100732 (-)
LOC120546331 NA non-coding upstream 57076 16125385 ~ 16145169 (-)
G184730 NA non-coding upstream 181888 16250197 ~ 16251869 (-)
G184731 NA non-coding upstream 223081 16291390 ~ 16356567 (-)
G184755 NA non-coding upstream 311136 16379445 ~ 16382479 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 270216 15788826 ~ 15795638 (-)
rps29 NA other downstream 954375 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 1398253 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 1452908 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 1567484 14472201 ~ 14498370 (-)
LOC120546332 akap7 other upstream 78281 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 422341 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 757343 16825652 ~ 16835983 (-)
LOC120547341 NA other upstream 1198050 17266359 ~ 17269634 (-)
tbpl1 tbpl1 other upstream 1554815 17623124 ~ 17631351 (-)

Expression


Co-expression Network