LOC120546561


Basic Information

Item Value
gene id LOC120546561
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16493194 ~ 16516333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250220
GGTGTTCCGGGGGTTGTTCCAGTGGCAGGGAAGCCTGGCCTCACCATGGGCATCATGGGAGCTCCTGGTGCCCCAGGCTGAGGTGCCGCTGGGGTTCCCATTGTGagatctgagagagagagagagagagagagagagagagagagaggtactgCAAAATCACTGTTTTCATTTACTGACATTATAATGACCACATGGgataagaagattgataccgc
>TU250222
CAGAGAGAAAATGCAGTGAGGTTTAAAGGAGCGGGTGACAATGAAACCATTAGAGTTTATTGCATGAATGATagaaagagaggggaaagaaagaGTTAAGCCTTAAAGCAGTAGTATTGCAGACCGTCAGTATATATAACATGAAGACCAATGGCACAGGACAGGAGATGACTAGGAACCAGGTGAACGGGGTTCATGTTGCCATAGTAACAGTTACCACAGGGGCCGTGAATGGTGGCAAAGATCAGAGGGAATCCCCAGAGACTAATGACCACAGTCGTGCTATGCAAATGAGGTGATGCAATGATGACGTTAATATAACCATATATGGACTCAACAGGGAATTTGCTTTACTGAACCAATGACAAGATGAGTCAAAACATCACACCCAAGCTTTTATTTGATGGGGATATGGTATTCAGTGTGATAAtcagcaaattaataaaactaaaatgtacCTTAGTTAACAGCAAACCATTTCATTAACCATTACCAGAGATAATAGAAACAGTGACTGACTCCACAAAACAGCTGTTTTTTCAGGCAAACACTGTTGTAACCAATTGAATGGAAGATGTCAATAAAGTACATGATATtataatgacaaaaacaaggcGTCATGCAATTACTAATGAATTAACAACAGCTACAGTCATGGATGGATTATAAGAACAAACATGTAAAAGACCCCCCACCCCTTCTACAGATTATAGGAGTAAGACACCCAGACTGAAAGATAACAAGCGTCTCTATTCGTCTCTAGCGTCTCTTGCGTCTCTTGCTGCATCTCATTTAGTGTAACAACATTTTGCACTCAGGTTCTGCTGTTGTTTGAAAAACTGCAGTGCCTCTTCGTCTGTGTTATCCATCTGTGTTTATTTTATGTCATTCATGTCAGTCTGGTGTGTTTGTACTTCCTTTTTTATGTAAGCGTGCAGTCCATAACGTACAGTGTTGTGAATAAGAATTTCCCCTTGGAGACAATAAAGTCTAAAAAGTCTAAACCTCAGCATTTAGATTACACTGGAGATGAAGAAGCACACTATAGAAAATATAGGAAAACGTCAGTTAGCCCGAGAGGCAGGCTATATTTTCTTAAAGCAGAGCTATTCTgctgtcaaactcattttaatAGCTTTACTAATGTGACTGTGTTTTGATGAAATATATAGCCAAAGTATTCTGTGCAGCTATAACATGAAGGaaacaatacacaaaaacaaatattggAGTTGTATACTGGATTTGGTCTACTTGATATAAAAAGACTCTGATCAGGATCAGAGGCCCTTTGGCCTTTGTCCAGAAAGCCTGTTTGGTAATCCATCCATGGCTAGAGCACAGTGTGTTTCCCAGAAATGGAAATATTTCTGTGAAATGTCTGCAACGTGTTGGCATTCCCTCCACTGCACACACTATGCATGCAGAGTgagatttcatttgtttttttttatttgtattttttaccTGACATGAGCTCAGCACCGGgggcagcaggagcagcagcagctgtggcATCTCCTCCTGTGGACTCAGCTCCAGCGTTGGCGGCAGGGGCGGACGTGGCAGCGGCCCCACCTTCAGTGGCTGCTACAGAGGCCTCAGTGGAAGGAGCAGATGTTGCAAAGGCATCTGGGGTTCAGACAAACCCCACCAGAGGATAGAGTCGTCCAGAGAGACAGATGAAGAAGTAAATAAGAAAATAAGGAGTCAAGAAACATGAGGAAGAAAAGAGAGCATCGGGAAAATAAAGGTAATCTTCTCGTGACAGTAGCTTAttcaactgtaaaaaaaatggtAGCTTGcagccttaaaggggtgatagaatgcaaaaccgattttaccatagttgaaaaattacagtttggtgggtaaataggacatacatagaacctcaaaatcccatcgaaacctctttcctctgcaaatctcacaatttgaaactgctgctgaaaacgggcgaatctgaacaaagctaaaagttgacatcAACTTCTCAATttctcctcatttggctctaccttctatctttgtaacgccccaaaatttacataggccactaattgatctgaggtcagttagtcttctaaatctaggtcgtgcagatctctgctattctattacaaaattcacttctgagactttttttatgcgagaaattaactatgtaaagctcaaatatgggccgttttatgaaaattgatggctaatctGCTGGGACAGGTGGCGGCTGCTGGCCGGGTTTGCTGCCTTCCCTGtcggcctctcccccttcacggacccgctgagctggagctgtgtcaggatctcacacacgagctgcgctgtgtactttagaaaagaagaaagtttggaggttttgcaaggatattgaaaaagaACCACGGTCGTAAACgcagtgttccagactgtacaacggaatagcctactggccgagagaaaagggtttagaacgagtatatcgGATGAGAGGGAGTTGTTGATCTAACGCAGCActgcagaggc
>TU250223
GGTGTTCCGGGGGTTGTTCCAGTGGCAGGGAAGCCTGGCCTCACCATGGGCATCATGGGAGCTCCTGGTGCCCCAGGCTGAGGTGCCGCTGGGGTTCCCATTGTGagatTACTTGCCATGTTAGCCATGGAGGTGTCAACATCCCCCGCctgaggggtcaaagtgggctTCATTACATCGCcTGACATGAGCTCAGCACCGGgggcagcaggagcagcagcagctgtggcATCTCCTCCTGTGGACTCTGGCAGGTCAACCCAAAATACACCAAACCATGCCATGCCATGCCAGGTCAAAGTAGGTTGTTGAGCCATCGCAGCATAAGGGCAAAGAAGGGGTAATAGTCAGCCTTCGGCTTCACGCTGGTAATGCCAAACAAAGTGCATAGAGTTAGATAGGAAGACTGAATACACAATTATGTATATTTACATAAAACCAGGAAACATTGCTTTCATATGCACACATCCACACATCTCAGCATAATGCCATACTCATTTGACAGTCGCAGTAAAGCATCCACCTGCATTTTCAGAGGCACCAAGGCcaagaaaaaagaggaaagtaaaaaacaaaaaagaaaagtgaagtCGTAGCTTGCAGTTCAGAAATAATTTGACTATTTCAGCATGATCAAGCTTCATCAGGTATTCCCATTGTTACAAGATATCTATGAGTTTCAACACAAAAGTACAATATGCAATAACATAACTTCCCAGTATTTATAAAACCTAATATCAATTTTAGTAGTTTAATTTGATGTTTCCCAGATTttactcttcttctttagtaATGTCTTCATGAACAGGGGAGGCAGAGTGAGGGCAGCCGGACATGTGAGTTACCCACCACCAAACAGGTTCACGATGGCTCCCATGTCAATTTTGGGTGGGGGTGCGGAGGAGAGGATGGGGGCAGGGGAGCTGAACATATCTGCTGGGAAGGGCAAGGTGGAGATAGTGTTTAGAACCCAAACATACTcacgcacaaatacacacatactatTGACCCGTTATTTATTATAATGCACATTTATCAATTGCAATCGCAGTGCATGCAGTACATGCTGGAATGGGAAAGTAGGTAAGAGTGATTTAGTAAACGTTTCAGACAGCTCAATAGCTTTTAGCTGACCCATAAGAGAGCAatctcatttcctttttttccccttccctGATCAAAGCCAAGGACAAAGCTGAAAATCAAGACAGGatatgagagtagagcgcacgAGAGATTGCAGAGTAGGTGCAATCGGGTACCTGCTGTAAACAAGTCAACACTGGGAGCGGGGTCTGCTTTGGTGAAGCTTATGTCTGGCATGGAATCAAAGATATCTATGAACACATGCGCACCCAGAGACAGGAATATTAACAAACACTTTGAAATGGTCAGGttgctctcacacacagcagccaACTGAAAAAGGCCTTCAATATGTGCAGATACATCTGATACCAATGAAGaataaaagagaggagaggatgacAAGCAGCACCAGATGGGGGAAATCAGCAGGATGCTAATCAATACGACTAAGAGCACAAGACATTAAGATTAATACCGGACCACACACATCTCTAACGTTTACCGCTGAAAAGGTCAGTCGCAGGGTTGGCAGCGCTGGGAGCGCTGGGAGCTGAAATGGTTgcagtggtggtgatggtgctgGATGCAGAGGTGAAGAGCGGGGAAGGGGAGGGGGATGAGCTAAAACAGGCATCCAGCGAACTACCCAGGTTATTATTCTCCACAGTCATCATGCCGAAAAGGTCTAGACCTGAAGACGCTGCGTTGGTGCTACCATCCAAGGGAGCAAAGGGGTCTTTGGGGAAGAAGTGGGGTGGGGTGTGAGGAGGAAATGTAACACATACATAGAAGGGGAGGATGTTAAAGACTTTTACACAACATAGACACattttatgtgatgatgatgaaaatacTGCTATAAACATGAAAgctgaggagaaaaaaaatctgagagGAATGATAGGAGAGAATGTGCAGAGCTCCAACACACTCCTGCTGTCAGTCCAAACAACTAAAAATAGCATCTGACAAATGAAGCAAATATTGAGCATCTTCACAGTATATAAACCTGAGGAACAAACCACAACTAAAACCAGGGAACTGCCACAGGCAACCTTCTCCATAACAGAAAATGCACAAATCTTCTGATGCCAAAAGATAAAAGACAAGTAAGAGCATTGTTCTTGATCGCCATGGAAACAACAATAGTACTGTCCAGACACCAGCAGTAATGAATAGCAAATCTATACGCCTACTGTTCCTGCACAAATCCTTGAGATGAAGCCATGATTAAAATGTGAGACCAACcagaaatgcacacaaacacactggcaCAAACAGCTCTGTAAGTTATTGAACATCTTTACATTCACAGTCATGGCACTCAAACCAAAAAAGGGTTTATTGGATTTGTTTAGGGGGATTTATTGACAGAAATGGGATATAATATTCATAGTTATGTTTTGATTAGTGTAGTGACACTTCATATCTACATAAGGGCGAGTCTGCTTCCACAGAGTCTGCCATGTTTCTATAGTAGCCATTAAGGGACAAACCAAACACTGGCTCTAGAGAGGGTCTTTCACGTTTTTACATCACCTGAAGGCCACCGTAGGTTCTCCTACACGCTTGGAAATTGAGGGATGAGGGAAAGGGTATTCAGTTGGTTGCAATCTGCAACCTCACCACTCAGTAAATCCTAC
>XR_005636882.1
TCTAACGCAGCActgcagaggcactggcagaagacaggcttgcaggggttcactctcctctccccacGCTTACTAGCTACAAAGatgAACCAGCAGCTGAGTTGATGCAAGGAGGGACACTTACCTCCCCAAGACGTGGGGGCAGCTGATTGCCCTGAGGGACCCGAGGAGGACAGCGGATCCAGGTCCAACAAGGAACTGGTGAAGGAGGCAGATATGGAGAGCGAACAACATGCAGTTCATCATTCTTTTCAGAAGCTTTCCTTGGCCCAAGGGGACTGTGTTTTCTACAAATTGGGCTGAACAGTGGCTTCTTGCAGCAGTGCCATCCCTTGACACTCTCAATCTGTTGTCATGGAAACGGACTGCACCACCACCGCCACCAACAACATGCACACGCCCACGCCCACCCCAAGGGTCACTGACTGTGTCACCGTGGAATAAATATGACTTATTGGCTTTCTGTATATATCTACCATCAAAGAAGCTCTTGTAAATAAAACATACTGaaagatatttaattatttaGGCAGCCTTTACTTGTACTTTTTTGCTCTTACTTCTTATTTTCAGCCTAAACTATatcaagacaaaaaataataatcattgaTTTTTTGAGGTTAGGAATTTCCTCCAGCCAAGACACACATGCAAGAGAAGCACAGTGGCCTACATACAAGAGGTTTTTTAAATTGCCCTAGTAACAGATACAGCATAACCTCATGGACTAAAAACCTTAGGAAGACAACACGTCCATATGTGTGTCTTGTTTATTTGTCTCATAAGTCTAGTTTATAAGGATATTTCCACATGTCTGGAGAGTTTGTCATATCAAGAGATCAATAAAGTGTCTCCTGTAGTTTTGAGAAAGAGGTAAAGGCTTGTACCAGTCCAAGTCTGTGCAGTCGAAAGTtaaagacacagaaaacaaaCCTATGGACACAGCAGAGAGTGAGGGAGCAATGGTCTCTAGTGCATGGCTAGCATTAGCATTGTCACCTTTGGCTGTGTAAATAATGCAAGGCAGTCATTGGCTGATTTTTAAATTATTCAGCAGGGGAGCGGATCACAAGATATAAGGTCCTAGCCCAAGACACAGGACCAGACCTGCCCAGcgaccacacagacacagacagacaaaaaaggAAGACATGGAGGGCCAATCAGACCACCCGTCATCTGCAGTGCCATGCTAGCGCTTTGGTCTGACTCACTGTTTATGCTATATGACAGTAATTAGTTTGTCATAAGGTGGCCCCTGCTGTCATCTGGAGATGTGTCAATAAAGCTGTGAGGTTTGATAATGTTATTCATCTGCGCCTTTATGGCCCTATACCAGCCTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250220 False 218 lncRNA 0.53 2 16493194 16494494
TU250222 False 2505 lncRNA 0.42 2 16495957 16501887
TU250223 True 2732 lncRNA 0.44 4 16493194 16499974
XR_005636882.1 False 1346 lncRNA 0.45 4 16501866 16516333

Neighbor

gene id symbol gene type direction distance location
LOC120546559 LOC102791590 coding upstream 2555 16487014 ~ 16490639 (+)
LOC120547268 rnf146 coding upstream 102564 16387758 ~ 16390630 (+)
LOC120547267 NA coding upstream 106416 16384271 ~ 16386778 (+)
tpd52l1 tpd52l1 coding upstream 117980 16357559 ~ 16375214 (+)
rnf217 rnf217,LOC106571519 coding upstream 140539 16340938 ~ 16352655 (+)
pgm3 pgm3 coding downstream 2111 16518444 ~ 16523666 (+)
ccnc ccnc coding downstream 11656 16527989 ~ 16534031 (+)
faxca LOC104925628,LOC104963907,LOC103380784,LOC102789719,LOC101473580,LOC102289837 coding downstream 19978 16536311 ~ 16544495 (+)
tmem63a LOC104944870 coding downstream 72517 16588850 ~ 16599462 (+)
rsph9 rsph9 coding downstream 89053 16605386 ~ 16609726 (+)
G184633 LOC101069623,LOC100711363,LOC102312356,LOC101478077,LOC102202636 non-coding upstream 79693 16411676 ~ 16413501 (+)
G184618 NA non-coding upstream 136646 16291211 ~ 16356548 (+)
G184584 NA non-coding upstream 445513 16045809 ~ 16047681 (+)
G184540 NA non-coding upstream 565532 15926071 ~ 15927662 (+)
G184561 NA non-coding upstream 603609 15889365 ~ 15889585 (+)
G184796 NA non-coding downstream 79607 16595940 ~ 16610380 (+)
G184851 naga,LOC104944830 non-coding downstream 208544 16724877 ~ 16726392 (+)
G184948 NA non-coding downstream 417363 16933696 ~ 16956864 (+)
G184995 NA non-coding downstream 764782 17281115 ~ 17299420 (+)
G185022 NA non-coding downstream 877201 17393534 ~ 17397048 (+)
G184628 LOC104949332,LOC106633454,LOC101477798,LOC102792991 other upstream 89117 16399438 ~ 16404077 (+)
nkain2 nkain2 other upstream 101343 16248094 ~ 16391851 (+)
cenpw NA other upstream 111338 16379479 ~ 16381856 (+)
LOC120546249 NA other upstream 525071 15914586 ~ 15968123 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other upstream 773562 15694944 ~ 15719632 (+)
vegfab vegfa other downstream 155253 16671586 ~ 16686079 (+)
si:ch211-57i17.1 LOC103363786 other downstream 249212 16765545 ~ 16779935 (+)
G184859 NA other downstream 309361 16825694 ~ 16833314 (+)
G184996 sec63 other downstream 777321 17293654 ~ 17295701 (+)
map7b map7,LOC107374525 other downstream 825504 17341837 ~ 17375059 (+)

Expression


Co-expression Network