LOC120547043


Basic Information

Item Value
gene id LOC120547043
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16933693 ~ 16936181 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250501
aaaaaatgaaaaattggatatttgaacccatttttctgtttttccaaatgttcgtttgtgcttagaaaattgaactgataagtgtTGCACTGACTGTGTATGTACAACACATCTAGAGTCCTTCCTGTTACATCAgaagcatttttttcccccagcctACAAAGTACAGATACTGTTTTTGTAAATGGTTGATTCACATAGCATAACAATCCCTGAAGTCACtcacttttttgtctttgttctctGCGTCCCTCAGGACGGCCTACTGTCCACAGGCAAACAACCCACTTAAAGGTGCTGATTTAGGACTTAGCCATAAAATtagaacatcaacaacttctcagtccctcccccctttccgctaaagcccaaaacggcctcctaagcccctccccccacaagggagaatgaatgcgtgtgcatgagcagtgattgacacgcagttagacacacaCCCTGGTTCttattggtgcatctgaacagggagctgtggatttttgcaaatcacactacaggctgtaggtgatACCAGAAGacccagattttttttaatgacctgcttcatgtagttctactggaacatagggtcagtttcagcaaatatgacagaaagttagttttatgaggcttacctactgcacctttaactgaCAGTCAGAGCAGTTGTGGTGCATTTTTTTCTATGTTAAACAACTATTTTGTATATACTTTTGTCtgtatttatagttttttttcatattaatgttcaataggtttgtttgtttatgtgtgcacCACACCACCAAGGCAACTTCCTGTTACTTACTTGACAATACTAACTGacaattattttttgattaCACATTTGAAAATAGGTCAAATTGAATTTTTCTCTATGTGCAGGTGTGGTACCATGTTTGCCCGAACTGAGGCAGAGGCTGCTACAACACCCAGCTGAAGGAGGATGGAGGTTGCACCATCTGGTACAACGAGAAAGAGCTCCTGTCAGATATTGAGGAGCATCTAAAGTGCATAATCACCCAGTGTGAGCCATGACATCAAAGTACCTGTGGATGATTTTGATCGAAAGGTGGTAACTACAAGGGTCACGTGGATATTCTGGCCCCATCGGTCCAGGAGCTGGCTAACCTCGAGAGAGAAGCCCAATCTTCCTTCCTTCACCTGGGATACATGCCAAACCAGCTTTTCAGAGCTTTCTAAACACACCCCACTCCTTGGCCTTCACTACACTGCTTGAAAGAATAgtatggaatggaatggaatccTTGACATGTAATGCAAAACCTAATTTGTTGGATTTTTGTGTTGTCGTTTTCTGATTGATACGGTTTACTAAAATATTGAAGTTTAAGAGTAATTGGCTAAAAAGTCTATGTAATTAAgtgtctgttttctttcttgaaATAAACGTATAGCCTGCTCA
>XR_005637020.1
TGTGGTGGGAACACCCGGCAGACTGGACCCAAGTCCGCTTTCTCGTCCTGGATGAGTGTGtatgGTGTGGTACCATGTTTGCCCGAACTGAGGCAGAGGCTGCTACAACACCCAGCTGAAGGAGGATGGAGGTTGCACCATCTGGTACAACGAGAAAGAGCTCCTGTCAGATATTGAGGAGCATCTAAAGTGCATAATCACCCAGTGTGAGCCATGACATCAAAGTACCTGTGGATGATTTTGATCGAAAGGTGGTAACTACAAGGGTCACGTGGATATTCTGGCCCCATCGGTCCAGGAGCTGGCTAACCTCGAGAGAGAAGCCCAATCTTCCTTCCTTCACCTGGGATACATGCCAAACCAGCTTTTCAGAGCTTTCTAAACACACCCCACTCCTTGGCCTTCACTACACTGCTTGAAAGAATAgtatggaatggaatggaatccTTGACATGTAATGCAAAACCTAATTTGTTGGATTTTTGTGTTGTCGTTTTCTGATTGATACGGTTTACTAAAATATTGAAGTTTAAGAGTAATTGGCTAAAAAGTCTATGTAATTAAgtgtctgttttctttcttgaaATAAACGTATAGCCTGCTCA
>XR_005637021.1
ccaaatgttcgtttgtgcttagaaaattgaactgataagtgtTGCACTGACTGTGTATGTACAACACATCTAGAGTCCTTCCTGTTACATCAgaagcatttttttcccccagcctACAAAGTACAGATACTGTTTTTGTAAATGGTTGATTCACATAGCATAACAATCCCTGAAGTCACtcacttttttgtctttgttctctGCGTCCCTCAGGACGGCCTACTGTCCACAGGCAAACAACCCACTTAAAGGTGTGGTACCATGTTTGCCCGAACTGAGGCAGAGGCTGCTACAACACCCAGCTGAAGGAGGATGGAGGTTGCACCATCTGGTACAACGAGAAAGAGCTCCTGTCAGATATTGAGGAGCATCTAAAGTGCATAATCACCCAGTGTGAGCCATGACATCAAAGTACCTGTGGATGATTTTGATCGAAAGGTGGTAACTACAAGGGTCACGTGGATATTCTGGCCCCATCGGTCCAGGAGCTGGCTAACCTCGAGAGAGAAGCCCAATCTTCCTTCCTTCACCTGGGATACATGCCAAACCAGCTTTTCAGAGCTTTCTAAACACACCCCACTCCTTGGCCTTCACTACACTGCTTGAAAGAATAgtatggaatggaatggaatccTTGACATGTAATGCAAAACCTAATTTGTTGGATTTTTGTGTTGTCGTTTTCTGATTGATACGGTTTACTAAAATATTGAAGTTTAAGAGTAATTGGCTAAAAAGTCTATGTAATTAAgtgtctgttttctttcttgaaATAAACGTATAGCCTGCTCA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250501 True 1423 lncRNA 0.41 3 16933693 16935625
XR_005637020.1 False 605 lncRNA 0.45 4 16933693 16936181
XR_005637021.1 False 792 lncRNA 0.43 4 16933693 16935582

Neighbor

gene id symbol gene type direction distance location
LOC120546412 NA coding downstream 318 16912722 ~ 16933375 (-)
itsn2a itsn2 coding downstream 14015 16880795 ~ 16919678 (-)
LOC120547035 esrrg,LOC100695726,LOC102786194,LOC102294499 coding downstream 110628 16792438 ~ 16823065 (-)
si:ch211-57i17.5 LOC101467041,LOC102294206,LOC104964595 coding downstream 148792 16783049 ~ 16784901 (-)
naga naga,LOC104944830,LOC101471811 coding downstream 205256 16720524 ~ 16728437 (-)
LOC120547041 NA coding upstream 1596 16937777 ~ 16955937 (-)
ddx1 ddx1 coding upstream 20067 16956248 ~ 16965367 (-)
lratd1 fam84a coding upstream 242183 17178364 ~ 17180711 (-)
scml4 LOC100701983,LOC102215682,LOC101464936,LOC102300852,LOC104950495 coding upstream 333680 17269861 ~ 17287641 (-)
sec63 sec63 coding upstream 354985 17291166 ~ 17306226 (-)
G184903 NA non-coding downstream 109096 16824296 ~ 16824597 (-)
G184897 NA non-coding downstream 159422 16772721 ~ 16774271 (-)
G184877 NA non-coding downstream 171005 16709755 ~ 16762688 (-)
LOC120547094 NA non-coding downstream 217376 16711035 ~ 16716317 (-)
G184869 NA non-coding downstream 258186 16673588 ~ 16675507 (-)
G184989 NA non-coding upstream 233508 17169689 ~ 17170262 (-)
G185031 ppp1r14c non-coding upstream 376304 17312485 ~ 17332973 (-)
G185039 map7,LOC107374525 non-coding upstream 425828 17362009 ~ 17362903 (-)
G185054 NA non-coding upstream 460290 17396471 ~ 17399451 (-)
G185035 NA non-coding upstream 490023 17426204 ~ 17432964 (-)
gpatch2 gpatch2,LOC102785715 other downstream 97710 16825652 ~ 16835983 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other downstream 415819 16490650 ~ 16517874 (-)
LOC120546332 akap7 other downstream 745363 16146590 ~ 16188330 (-)
LOC120546224 NA other downstream 865384 16065854 ~ 16068309 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 1138055 15788826 ~ 15795638 (-)
LOC120547341 NA other upstream 330178 17266359 ~ 17269634 (-)
tbpl1 tbpl1 other upstream 686943 17623124 ~ 17631351 (-)
zgc:153284 NA other upstream 828624 17764805 ~ 17766910 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other upstream 975089 17911270 ~ 17913036 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other upstream 1553634 18489815 ~ 18506198 (-)

Expression


Co-expression Network