G185145 (LOC108242497,LOC106926748,LOC106945794)


Basic Information

Item Value
gene id G185145
gene name LOC108242497,LOC106926748,LOC106945794
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17669172 ~ 17686398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250755
GCAAGATCGCTTTGAAGAGGCATCTGTCAAATGTTCAGGTAATGTGAAGTTGTCTGAGGGGCCCAGTCAATGTGCTGGAAGAGTGGAGTTCTACGACAATGGCCAGTGGGGGAATGTGTGTGGTGAATCCTGGGATGTGAATGATGCAAATGTGGTGTGCAGACAGCTGGACTGCGGGAGGGCTCATAAAATTACCACTGTGGCTGAGTATGGCCATGGTACGGGACACACCTGGATTGAACAAATTGAATGCAATGGAATGGAGTCAACACTGAGTCAGTGCTCACAGAGACCAtttagagacaaaaaatgcaactCAACCTCAGTTGCTGGTGTTCTCTGCACAGGAAGTTTGGAGGTCCGGTTGGTTAATGGTAAAGATGAATGCTCTGGCAGAGTAGAGGTCCGTCATGGCAATGTGTGGCAAACAGTTTGTGACACAGACTGGACCCGGAGTAAAGCTGAGGTGGTGTGTGAGCAGCTGGAATGTGGAAATGCATTGAGCGCTCCTGGCGCTGCCCATTTTGGCCAAGGCAGTGGATCAGTAGTGGAGGCTAGCAATTCATGTTTTGACAATGTGACATCTCTTCAGCAATGCTCACTCAAAGGTTTCAGAGGAGCAAGGTGTGGGCACGAACATGATGCTTCTGCTCTATGTGCAGCACAGATACGGGCAGTCGGCGGCTCAGGTCAATGCTCTGGTAGAGTGGAGATCTTCTATAAAGGCCAGTGGGGAACTGTGTGTGATGATGAGTGGGGAATGAGCAATGCTGATGTGGTATGTAGACAGCTTGGCTGTGGTCATGCCGTTTCTGCTCCTATGAGTGCCCACTTCGGTAGAGGCACTGGCCCAATATGGCTGGATAATGTGGATTGTAGAGGCGAAGAGTCTGCTCTCACACATTGTACGCATCCAGGTTTTGGAGTAAATAACTGCGGGCACGGTGAAGATGCTGGTGTTATCTGTTTAGGTAAGAGGC
>TU250756
ACAGGAAGTTTGGAGGTCCGGTTGGTTAATGGTAAAGATGAATGCTCTGGCAGAGTAGAGGTCCGTCATGGCAATGTGTGGCAAACAGTTTGTGACACAGACTGGACCCGGAGTAAAGCTGAGGTGGTGTGTGAGCAGCTGGAATGTGGAAATGCATTGAGCGCTCCTGGCGCTGCCCATTTTGGCCAAGGCAGTGGATCAGTAGTGGAGGCTAGCAATTCATGTTTTGACAATGTGACATCTCTTCAGCAATGCTCACTCAAAGGTTTCAGAGGAGCAAGGTGTGGGCACGAACATGATGCTTCTGCTCTATGTGCAGCACAGATACGGGCAGTCGGCGGCTCAGGTCAATGCTCTGGTAGAGTGGAGATCTTCTATAAAGGCCAGTGGGGAACTGTGTGTGATGATGAGTGGGGAATGAGCAATGCTGATGTGGTATGTAGACAGCTTGGCTGTGGTCATGCCGTTTCTGCTCCTATGAGTGCCCACTTCGGTAGAGGCACTGGCCCAATATGGCTGGATAATGTGGATTGTAGAGGCGAAGAGTCTGCTCTCACACATTGTACGCATCCAGGTTTTGGAGTAAATAACTGCGGGCACGGTGAAGATGCTGGTGTTATCTGTTTAGGTAAGAGGC
>TU250758
TGATGTTAAGATGTGAGACAAGAACTGGTTCTCTCAAGTCAAGTGTTTGTGACAGAACAAGTCCTCAACTCATTTTGTAAGCATTTGATCTACTCTGAAGACACAATATGATCTCCATTACTGCTGAAaaactacattttgttttttatttgtcaatagGTCTACTGAGTCTACCACTGCTTACAGAATATGTGAGAGTGGTCAACGGAAGCAATCGATGCAGCGGTCGAGTGGAAGTCCACCATGATGGCAACTGGAAACGAGTGTGCAATGACTGGACCAAGGCAGACGCTGACGTGGTGTGCCGAGAGATTAACTGTGGCACTCCTGTCGATCAGGCTGAAGTGCTATATTTTGGAGAGACACATGACCTGGGTGGCGTCAAACCCAAGTGCTTTGGGAATGAGAGCTCTCTCTCACAGTGCAGACTTCAGGAATTCAAGGAAAGCTGTGTCGATGCTACTGTTGTCTGTACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250755 True 980 TUCP 0.50 4 17682558 17686398
TU250756 False 637 lncRNA 0.51 3 17680465 17686398
TU250758 False 478 TUCP 0.45 4 17669172 17672886

Neighbor

gene id symbol gene type direction distance location
tcf21 tcf21,LOC102777283 coding upstream 14811 17652502 ~ 17654361 (+)
slc2a12 slc2a12 coding upstream 46060 17615329 ~ 17623112 (+)
sgk1 sgk1 coding upstream 73118 17560853 ~ 17596054 (+)
aldh8a1 aldh8a1 coding upstream 153589 17506954 ~ 17515583 (+)
hbs1l hbs1l coding upstream 164298 17480198 ~ 17504874 (+)
eya4 eya4 coding downstream 23401 17709799 ~ 17758414 (+)
lca5 LOC104965141 coding downstream 105455 17791853 ~ 17799948 (+)
fam167ab fam167a,LOC102799533 coding downstream 113692 17800090 ~ 17808692 (+)
mtmr9 mtmr9 coding downstream 202243 17888641 ~ 17904513 (+)
tdh LOC108242421,LOC106524872,LOC104962272,LOC104922441 coding downstream 220343 17906741 ~ 17913030 (+)
G185134 NA non-coding upstream 1452 17633119 ~ 17667720 (+)
G185136 NA non-coding upstream 7359 17640961 ~ 17661813 (+)
LOC120546270 NA non-coding upstream 14811 17636952 ~ 17654361 (+)
G185112 NA non-coding upstream 115263 17553442 ~ 17553909 (+)
G185107 NA non-coding upstream 118067 17550558 ~ 17551105 (+)
LOC120546941 NA non-coding downstream 298 17686696 ~ 17688280 (+)
G185155 rps12 non-coding downstream 74278 17760676 ~ 17763736 (+)
G185156 NA non-coding downstream 77571 17763969 ~ 17764792 (+)
G185254 NA non-coding downstream 371013 18057411 ~ 18059367 (+)
G185258 LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026 non-coding downstream 416627 18103025 ~ 18104904 (+)
map7b map7,LOC107374525 other upstream 294113 17341837 ~ 17375059 (+)
G184996 sec63 other upstream 373471 17293654 ~ 17295701 (+)
G184859 NA other upstream 835858 16825694 ~ 16833314 (+)
si:ch211-57i17.1 LOC103363786 other upstream 889237 16765545 ~ 16779935 (+)
vegfab vegfa other upstream 983093 16671586 ~ 16686079 (+)
G185237 NA other downstream 230455 17916853 ~ 17917248 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other downstream 334558 18020956 ~ 18054926 (+)
znf513a znf513,LOC102795572 other downstream 440733 18127131 ~ 18140260 (+)
ylpm1 ylpm1 other downstream 911967 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 1019458 18705856 ~ 18711994 (+)

Expression


Co-expression Network