LOC120546940


Basic Information

Item Value
gene id LOC120546940
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17674393 ~ 17693634 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250765
CAGACTctaaaggaaaaaaagggatCGTGTTGCTGTGCCCAATTAAGTCCTGCATCAAATATAAAATCCTCCTTCTCACctacaaatccctccatgcTCTGGCCCCACAGTACCTCTCCAACCTgctccatccatacaccccagcccgaaacctgcggtcctcagacactggcctgctctccattccccacaccagactctgtaccttcggagacagagcctttagtgttgcagccccatccctctggaacaccctccctgcagatatgtgaaatgctacatccctggacatttaaaaaaaaaaacctcctaAAACACCACCTGTTTACCACAGTCTACTACAACCTCCTTTAGCTTAGCCCcagtaattctgtaaagtgtccttgggtttcttCAAAGgccc
>XM_039782210.1
TTGATGACGAGTGGGACATATCAAAGATGCTGAGGTGGTGTGCAGAGCCATGGACTGTGGAACAGCTAAGACAGCCAAATCCAGTTCCTTCTTTGGTCAAGGCCAAGGAGCCATCTGGCTGGATGATGTAGGCTGTATCGGTAATGAGACGTCTCTTATGCACTGCCGACATTCCACCCTCGGAGAACATAACTGTGGTCATCGGGAAGATGCCGGTGTTGTGTGCTCAGCTAACATTAGACTGATGAATGGGACTGACCAGTGCTCAGGCAGGGTGGAGTTATACCATGGTGGCCAATGGTCAGCAGCATATAATCTTAACTGGGGAATGAATGAAACTGCAGTGGTGTGCAGAGAGATGAATTGTGGAGATCCTGTTAAGTTCTCAGGATCATATGGTCAGGGCAGACATTCAAGAGGGTATACGATCAGCTGTAGCGGTAGAGAGAGCTCTCTCACACTGTGCACACTGAGAGAATATGTCAGGACCGGGCAAGATCGCTTTGAAGAGGCATCTGTCAAATGTTCAGGTAATGTGAAGTTGTCTGATGGGCCCAGTCAATGTGCTGGAAGAGTGGAGTTCTACAACAATGGCCAGTGGGGGAATGTGTGTGGTGAATCCTGGGATGTGAATGATGCAAATGTGGTGTGCAGACAGCTGGACTGCGGGAGGACTCATAAAATTACCACTATGGCTGAGTATGGCCATGGTACGGGACACACCTGGATTGATCAAATTGAATGCAATGGAATGGAGTCAACACTGAGTCAGTGCCCACAGAGAccatttagagacaaaacttgcAACACAAGCTCAGTTGCTGGTGTTGTCTGCACAGGTAAGAAAAAGCATACAAAAATGACAAGATAATACAGTCTTGTTTGTTGTTCACTTGTATCGCTCCCATAACTATGTCAATttcatgtatgtttttttttcgctTAGTTTTACAAAACTTGTTTCTATATATTGCCACTTTcaatctcattcccacatggcTTGACAGAAAAGGTCACACTTACTTGGTGTTTCAACCACATTTTCTGGTCTTCCTCCGCAGAATCATCAGTCATGAAAATGCTTTAGTCGTTATTAAATACCTACGTATGGAATTTTAGTCATGTGATAATAGGGGCTTGTAAATGCTGGGGGGGCGTAACTCCTGCCACTGGTCAAAGATCAAGAATGACCTTTCAAGATGAACACAGTTTTTTCATTGCTCTCAGTGTGACATTCAGTGACCCGATGAACTTCATGACTACATTTTAAATCCCTCaatccattatgaaaaaaagcaaagaaaaaaaatggtctCACTCTGCCTATTAAGGCTGTATTAAATCTATGGTTGAATTAATTAATATAACTGATAAAGCATAGCCCTGGTCGGCCTATGATGTAAAGCCATTGaacacctctttttttcttcgtcACGTTTGGAAATCTATCGAAAACGTTAACAGACAATGTGAGTCTAatgatggaaagccaaaaaataaaagggaaagGTGGTTCTGAGATGGTCAGACTctaaaggaaaaaaagggatCGTGTTGCTGTGCCCAATTAAGTCCTGCATCAAATATAAAATCCTCCTTCTCACCTACAAATCACTCCATGCTCTGGCCCCACAGTACCTCTCCAACCTGCTCCATCCATACACCCTATTCGAAACCTGCGGTCCTCAGACActggcctgctctccattccccacaccagactGTGCCTTCGGAGACAGAGCCAAACTCCTGAAACAACACCTGTTTACCACAGCCTACTACAACCTCCCTTAGTACAGCCactgtaattctgtaaagtgtacttgggtttcatgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250765 False 403 lncRNA 0.49 2 17676725 17693634
XM_039782210.1 True 1837 mRNA 0.44 3 17674393 17677036

Neighbor

gene id symbol gene type direction distance location
tcf21 tcf21,LOC102777283 coding upstream 20032 17652502 ~ 17654361 (+)
slc2a12 slc2a12 coding upstream 51281 17615329 ~ 17623112 (+)
sgk1 sgk1 coding upstream 78339 17560853 ~ 17596054 (+)
aldh8a1 aldh8a1 coding upstream 158810 17506954 ~ 17515583 (+)
hbs1l hbs1l coding upstream 169519 17480198 ~ 17504874 (+)
eya4 eya4 coding downstream 16165 17709799 ~ 17758414 (+)
lca5 LOC104965141 coding downstream 98219 17791853 ~ 17799948 (+)
fam167ab fam167a,LOC102799533 coding downstream 106456 17800090 ~ 17808692 (+)
mtmr9 mtmr9 coding downstream 195007 17888641 ~ 17904513 (+)
tdh LOC108242421,LOC106524872,LOC104962272,LOC104922441 coding downstream 213107 17906741 ~ 17913030 (+)
LOC120546942 NA non-coding upstream 2916 17669166 ~ 17671477 (+)
G185134 NA non-coding upstream 6673 17633119 ~ 17667720 (+)
G185136 NA non-coding upstream 12580 17640961 ~ 17661813 (+)
LOC120546270 NA non-coding upstream 20032 17636952 ~ 17654361 (+)
G185112 NA non-coding upstream 120484 17553442 ~ 17553909 (+)
G185155 rps12 non-coding downstream 67042 17760676 ~ 17763736 (+)
G185156 NA non-coding downstream 70335 17763969 ~ 17764792 (+)
G185254 NA non-coding downstream 363777 18057411 ~ 18059367 (+)
G185258 LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026 non-coding downstream 409391 18103025 ~ 18104904 (+)
LOC120546825 NA non-coding downstream 462336 18155970 ~ 18164654 (+)
map7b map7,LOC107374525 other upstream 299334 17341837 ~ 17375059 (+)
G184996 sec63 other upstream 378692 17293654 ~ 17295701 (+)
G184859 NA other upstream 841079 16825694 ~ 16833314 (+)
si:ch211-57i17.1 LOC103363786 other upstream 894458 16765545 ~ 16779935 (+)
vegfab vegfa other upstream 988314 16671586 ~ 16686079 (+)
G185237 NA other downstream 223219 17916853 ~ 17917248 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other downstream 327322 18020956 ~ 18054926 (+)
znf513a znf513,LOC102795572 other downstream 433497 18127131 ~ 18140260 (+)
ylpm1 ylpm1 other downstream 904731 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 1012222 18705856 ~ 18711994 (+)

Expression


Co-expression Network