G185258 (LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026)


Basic Information

Item Value
gene id G185258
gene name LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18103025 ~ 18104904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250934
CGGGAATATTATTtaagttagaaaaaaaaagtcactccTACTGTGTAGCAACTTGGCTTGAAGCATGTGATATTTACTTGCTGACACAACAGTTGTTAGATTCTTAATCCCCCATAAAACAAATCATGCTTGTGGGGGTCTCTTTATTTGTAAAGGGAGAGGGAAGAGGGAGGTGAGGTCACTAAAAGAAGTGTAAGAATACAGCCAGATAAAGAGAGGGCTTCATGAAACAGATTCATAATAGAGGGGGAGTAAGGTAGCCTTTTACAGAAAGGACAACATAGAAAAAAACAGACTGAACCAGTCAGCTAACATGCTTTCAGTCACTTCTGTTTTAGATTAATTGATGGATGCTATCCTGTCTGCTTCACATTTTATCCCCCTCCAATTTTTATGTCATAGTCTCATGCTATTTGTCTcatacacacaatcacacactttTTCATTTGCTCTCTCTAAACCCGCGTCTTCCTTAGAGGCTGGAGCTAGAAGGCAACTGGTGGGAGGGCCTGTCTTGGAAGCAGgaggtggccttgaccaacgaTTCTCAGGTCAATCCAGTGACATGTCAGCTCAtggatttctttatttccaTAAAACCTGACTAATCTTCAACCAAGTACAAAGCCTGCATTGGAGGACCTCATACACTGTCTATTTCAAAGACTGGGAAAACTGTCCCTTCGTCTCCTCCTGCTTCCCCTCCTGGTTTCTCTCGaccctcctgctcctctcctcctcctcgtcttccTTCCAGTTCTGAGGCACACAGGTAGTCTTGGGACTGGGACTGGGAGTGTCCCAGGGACTCCACTGACAAGCTTCGGCTGGACAGGATGCTACTTAGGCTGGACTGGCGGGCGCCTCTGGGATGGGTCTCAATTTCCACACGGACCTCAATATTGGTTCCTTCTCTCAAAGGATGCGCTTGTGTGTCATCGAGCTTGCTGTCAGGCACAATAACCACCTCGCAGTCTGACTGGCTGTTCTGCTGGGTGTATCCGTGGTGTTTTGTGGCTTCATCCAATTCCTCATAGCTATCTAGCTCCGGTGGCGTGGTGCTTGTACTAGGGAGGACGCCCACTTCCTGTACACTGACTCTGACTTCCTCGACACTGGTGTCGCTGAGCGTTGGGTTGTTCTGACCTGTCCAGTGGTCACTGAAACTCGCTAAGTCCTCCAGCTGGattttgtgtgtttcagggGGCTCACTCGGCGGTCGACACCAACCATTCCTACAGAGCGACATTGGGACCACGCCATATACATAAGTCAGCATTAGCGGCACACCCACACCTGCAGGAAAACAGAATTATGAAGTATGAGAAACCAATTCATAATATATTTCTTATAATCATTTGTCTAGAGTTTgtgccaaaatacattttaataacatacaaatgtttttaaaagagtATTCTTGTGATTTAGTATTTCACTAAGT
>TU250935
CGGGAATATTATTtaagttagaaaaaaaaagtcactccTACTGTGTAGCAACTTGGCTTGAAGCATGTGATATTTACTTGCTGACACAACAGTTGTTAGATTCTTAATCCCCCATAAAACAAATCATGCTTGTGGGGGTCTCTTTATTTGTAAAGGGAGAGGGAAGAGGGAGGTGAGGTCACTAAAAGAAGTGTAAGAATACAGCCAGATAAAGAGAGGGCTTCATGAAACAGATTCATAATAGAGGGGGAGTAAGGTAGCCTTTTACAGAAAGGACAACATAGAAAAAAACAGACTGAACCAGTCAGCTAACATGCTTTCAGTCACTTCTGTTTTAGATTAATTGATGGATGCTATCCTGTCTGCTTCACATTTTATCCCCCTCCAATTTTTATGTCATAGTCTCATGCTATTTGTCTcatacacacaatcacacactttTTCATTTGCTCTCTCTAAACCCGCGTCTTCCTTAGAGGCTGGAGCTAGAAGGCAACTGGTGGGAGGGCCTGTCTTGGAAGCAGgaggtggccttgaccaacgaTTCTCAGGTCAATCCAGTGACATGTCAGCTCAtggatttctttatttccaTAAAACCTGACTAATCTTCAACCAAGTACAAAGCCTGCATTGGAGGACCTCATACACTGTCTATTTCAAAGACTGGGAAAACTGTCCCTTCGTCTCCTCCTGCTTCCCCTCCTGGTTTCTCTCGaccctcctgctcctctcctcctcctcgtcttccTTCCAGTTCTGAGGCACACAGGTAGTCTTGGGACTGGGACTGGGAGTGTCCCAGGGACTCCACTGACAAGCTTCGGCTGGACAGGATGCTACTTAGGCTGGACTGGCGGGCGCCTCTGGGATGGGTCTCAATTTCCACACGGACCTCAATATTGGTTCCTTCTCTCAAAGGATGCGCTTGTGTGTCATCGAGCTTGCTGTCAGGCACAATAACCACCTCGCAGTCTGACTGGCTGTTCTGCTGGGTGTATCCGTGGTGTTTTGTGGCTTCATCCAATTCCTCATAGCTATCTAGCTCCGGTGGCGTGGTGCTTGTACTAGGGAGGACGCCCACTTCCTGTACACTGACTCTGACTTCCTCGACACTGGTGTCGCTGAGCGTTGGGTTGTTCTGACCTGTCCAGTGGTCACTGACTACATGAGAGAATAGAAGATCTATAAGAGAAGTTGAAACTTCATCAGATCAGGTCGCGCTTTTAGAGCAAAAATTACCATGCACAATTGCAGTTGAGCTGGTTCCCTcggcttccagtctttatgctaagctaggctaattgCCCCCTGGCTCCAAC

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF19A-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250934 True 1444 lncRNA 0.46 3 18103025 18104904
TU250935 False 1322 lncRNA 0.47 2 18103025 18104517

Neighbor

gene id symbol gene type direction distance location
blk blk,LOC102291483,LOC102797075 coding upstream 91074 18002070 ~ 18011951 (+)
LOC120546768 NA coding upstream 109027 17976113 ~ 17993998 (+)
sox7 sox7 coding upstream 147427 17952559 ~ 17955598 (+)
pinx1 LOC102299901 coding upstream 153580 17919578 ~ 17949445 (+)
tdh LOC108242421,LOC106524872,LOC104962272,LOC104922441 coding upstream 189995 17906741 ~ 17913030 (+)
atraid atraid coding downstream 68265 18173169 ~ 18177104 (+)
nme6 nme6 coding downstream 89579 18194483 ~ 18198503 (+)
si:ch211-142k18.1 LOC104964445 coding downstream 168925 18273829 ~ 18282702 (+)
chrna2b LOC104964447,LOC101470861 coding downstream 178996 18283900 ~ 18293835 (+)
LOC120547097 LOC104922430,LOC103363566,LOC104964450 coding downstream 242332 18347236 ~ 18358913 (+)
G185254 NA non-coding upstream 43658 18057411 ~ 18059367 (+)
G185156 NA non-coding upstream 338233 17763969 ~ 17764792 (+)
G185155 rps12 non-coding upstream 339289 17760676 ~ 17763736 (+)
LOC120546941 NA non-coding upstream 414745 17686696 ~ 17688280 (+)
LOC120546942 NA non-coding upstream 431548 17669166 ~ 17671477 (+)
LOC120546825 NA non-coding downstream 51066 18155970 ~ 18164654 (+)
G185323 NA non-coding downstream 76228 18181132 ~ 18181983 (+)
G185353 NA non-coding downstream 192959 18297863 ~ 18298151 (+)
G185354 NA non-coding downstream 194409 18299313 ~ 18300098 (+)
G185356 NA non-coding downstream 197276 18302180 ~ 18302519 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 48099 18020956 ~ 18054926 (+)
G185237 NA other upstream 185777 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 409391 17674393 ~ 17693634 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 416627 17669172 ~ 17686398 (+)
map7b map7,LOC107374525 other upstream 727966 17341837 ~ 17375059 (+)
znf513a znf513,LOC102795572 other downstream 22227 18127131 ~ 18140260 (+)
ylpm1 ylpm1 other downstream 493461 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 600952 18705856 ~ 18711994 (+)
LOC120546624 prox1 other downstream 1099250 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 1249712 19354616 ~ 19427489 (+)

Expression


Co-expression Network