LOC120546829 (LOC104964434,LOC104922426,LOC103363570,LOC107377518)


Basic Information

Item Value
gene id LOC120546829
gene name LOC104964434,LOC104922426,LOC103363570,LOC107377518
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18489815 ~ 18506198 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU251109
AGAAGGAAAAGGACCAGTACCTGCCTCACCTTATCCTCATGATGATCCCACCCCACCGCCTGGAAGCTCAGTCCACACGCCGACGCAAGAGAGCGCTGGACACAAACTACTGCTTCTCaaacacagaggagaGCTGCTGTGTTCGCCGGCTCCACATAGATTTCCGCCGTGATTTGGATTGGAAGTGGATCCATGAGCCCAGTGGTTACGATGCCAACTACTGCTCCGGGCCCTGCCCTTACCTGAGGAGCTCAGATACAACACACAGCTCGCTGCTGAGCTTGTACAACACTCTGAATCCGGAGGCATCGGCCTCCCCCTGCTGTGTCCCTCAAGACCTGGAGCCCCTCACTATACTCTACTACTCTGGACGGACCCCCAAAGTGGAGCAGCTCTCCAACATGATCGTCAAGTCTTGCAAGTGTAGCTGAGAAGATGTGAAAGGCGAGGTAGTGCGGCAGGATTTTACTAGGTACTGACGAAAACCCATGCTCGTTGACTTTTGAACTCTTAGCTGTGACAATTACTAAAACTGACCCTGTGGCCTCATGGCTTAGATCTGAACACCACTCTGGAGGTCACATTTTTTAAGGATGcagattttcattttgtttcttgttttgtattttgttttcctcCCACTCTGGATGAGAAGTAGTTATTTTCAGTTCAAACCAAATGTTGCAATCATAGTATGATCTTAAAATATTTCCTTCTACATTTGTGAAGGTGGACAACATACTCTGCAGAGAGCCCTGTACAAATCTATCTGTGACAAAGTGGGAGCTGCTTCATTGACGATGACTGAAAGGGACTTATTTTGTGGTATATTTTCTGCTTCAGAGTTAAAGCAAATATTCCACAAAGTCATAGTCTCCCTGTTGTCAGTAGAGCAGCTTTCCCGTCTCTAGCCTTGGGATAATACTGTTTATAGTCACAAATATAGATTGTGCTCTACTGAATGGTCGAAGAGTCCTTTCAGGATGGATTTTACCTTGACTTAAGTTCCCTTCCTTTCAAACAGTGGACATTATCTTCAAACATAAAAGGAGAAAGGACAGACTTGCTGCTGTATCCAAAGCCATAGCTGTGGTCAGGGAAAAGGAGAGCTGAGAGAATGCCTGCTGGATTTGCAATGGAAAGtgaatgaacaaagaagttgagccaagcttttctttttttggccgGCCAGCAGCAATGGCCTTTTTTTTGCGGCTATTAGAATggatggaagaagaagaagggagtAGGGGACCTGATAGGAAGTGAAGAACTATGATGGAAACAAGCCATGAGCACAATGCCATTCACTGGAAGTTCTCATCTCTAACAGGTTCAAATTATTTATGGGACATCAAAGAATATACTGGAAAGGAACATGTGTTACGCAACAGGTTTTTATGGGATTTCTTTTACATTAATAGCAGATTTGATCCGTTATGCAACTTGTCATATAGTGATTGTTTCACTAACTGGGACAACGTTTGACGTAAACTAAGGGTACGGTTACATTTCCTTGTGATTCAAGAAGAATATGCTTTTTGTCCATATACAAATTAGTTGGACCTGTTGTATGTGATCCAGTATGTTTGACtgaagtcaactttattgtatTAAAAGGGGACCATCACCAGAAAGTTAAATCAGAGCACTTTTCTCCAGCATTAATAGGAAATGTCatgtcatttaaaatgtttacttcTTTTAAAAATCATACTCTCCTATCAACTCACCTGTGCATCACTCCATCCAGCTGACCAGGAATCGCATGTGTTCCCAAAAACACTGCTGTCTTTCATTCCCTCGGCTGCGTCTCAGTTTGTTTTAGTGCTCTTTTACAGTGTGAAGCCCTAatggaacaaaaaaaatgaagcgGGAGGGGAAAAGTCATTACATGACAGTGGCTGGATGTACAGTTAGACCTAATTTTTCTCTGAGTCAGGAGAACGATTCTGAATCCCTGTACTGTTTGACATTCACTCAGTCAGTCATCTTACCTTTAGATGACATTTAggtgacattttttttgcagtaaTATTGTTTGATTGACTTGTTGATCGTGATTgttattaaaaacacaacatgCAAAACTTG
>TU251114
ACCGCTCAAAGTCGCATATACCTCGTTAACCTGACAGCCTGCGGTCTGCCTCCGCACAGACAATAAAGCACTAGATTTTGATGAcagaaaaaaggagaaatatGCCGAGTTGTGGGACGACTTAAATCTACCGGATTGAGCACAAGAATGCAAGaaaagtctgttttttttctacagaTATTTGTGCCGGATACATTTTACTTGTGCGGATTAGTTTCTGTTGTTCTGGACTTTGAATTGACTAATGTCTAATGGGCGAACACACATTTGGATTTCTGCTGATAACAAAAGGGACAGCCACAAGAAAACGAATTAAGTAAGGAGTTTTTCATCATTAGTTCCCAAGGAAGTTAAAGGAAACATCAGCAGGGCTTATCAGTTTGATTTGACACTGACCTTGGCAGTCCTCGCCTGTGAATCTGCACATTTCAACTACCGAGCGAACCAAATGCAGAGAGAAAGATGCATTTGGGCAAGGCTTTACTGTTTGTCCTCCTCCTCAACTGCGCAACTTTGAGCTCATCTCTGTCAACTTGTGCCACCGTGGATATCGACCATGTGAAAAGGAAGAGGGTCGAGGCGATACGAGGTCAGATTTTGAGCAAACTCCGACTAACAAGTCCTCCACAATCTCTCGGACCGAGTAAAATCCCTTATCAAATCCAAGCATTGTATAACAGCACCAAGGAGCTACTGGAGGAACTTAGGAGGGATCGGCAGCAAAGTTGCGGTCaggacaacacagagacagagtacTATGCCAAAGAGATATACAAATTCAACATGGTCTACGGACCGCCAGAGAGCAACGATCTGCTCTACTGCCCAAAAGGCATCACCTCTAAGGTTTTCCGCTTCAACGTCTCCGCCATGGAAAGGAACTCAACTAACCTCTTCAGAGCAGAGTTTCGAGCCCTGAGGGTGCCAAACTCAAGTTCCAAGAGGAATGAACAGCGGATTGAGCTCTACCAGATTGTGAGGCCAAACGAACACATTAGGAAACAACGCTACATTGCAGCCAAGAACGTGCTGACCAAAGGTAATCCAGAATGGGTCTCCTTCGATGTGACTGAAACAGTGCGGGAATGGCTGATGAACAGAGGAACTAATCTCGGTTTGGAAATCAGTGTGCACTGTCCCTGCCACACCTTCAACCCAAATGGTGACATCATTGACAATGAGAAGGAGGTGCTGGAGGTAAAGTTTAAAGGTGGGCTTCAACAACATTTACTGATTAAGTTATATATGCCAGATGTTAGTTGCTCTTTTCATCTAATGTTTGTAAATGTTCATGTCTTCCTACCATTTTACCATCCCTCCTTTCAGCTTAGATGCAATGCATTGTGTTGCATATTTATGTGGTCCCTA
>XM_039782052.1
GGCCATACCGACCGCTCAAAGTCGCATATACCTCGTTAACCTGACAGCCTGCGGTCTGCCTCCGCACAGACAATAAAGCACTAGATTTTGATGAcagaaaaaaggagaaatatGCCGAGTTGTGGGACGACTTAAATCTACCGGATTGAGCACAAGAATGCAAGaaaagtctgttttttttctacagaTATTTGTGCCGGATACATTTTACTTGTGCGGATTAGTTTCTGTTGTTCTGGACTTTGAATTGACTAATGTCTAATGGGCGAACACACATTTGGATTTCTGCTGATAACAAAAGGGACAGCCACAAGAAAACGAATTAAGTAAGGAGTTTTTCATCATTAGTTCCCAAGGAAGTTAAAGGAAACATCAGCAGGGCTTATCAGTTTGATTTGACACTGACCTTGGCAGTCCTCGCCTGTGAATCTGCACATTTCAACTACCGAGCGAACCAAATGCAGAGAGAAAGATGCATTTGGGCAAGGCTTTACTGTTTGTCCTCCTCCTCAACTGCGCAACTTTGAGCTCATCTCTGTCAACTTGTGCCACCGTGGATATCGACCATGTGAAAAGGAAGAGGGTCGAGGCGATACGAGGTCAGATTTTGAGCAAACTCCGACTAACAAGTCCTCCACAATCTCTCGGACCGAGTAAAATCCCTTATCAAATCCAAGCATTGTATAACAGCACCAAGGAGCTACTGGAGGAACTTAGGAGGGATCGGCAGCAAAGTTGCGGTCaggacaacacagagacagagtacTATGCCAAAGAGATATACAAATTCAACATGGTCTACGGACCGCCAGAGAGCAACGATCTGCTCTACTGCCCAAAAGGCATCACCTCTAAGGTTTTCCGCTTCAACGTCTCCGCCATGGAAAGGAACTCAACTAACCTCTTCAGAGCAGAGTTTCGAGCCCTGAGGGTGCCAAACTCAAGTTCCAAGAGGAATGAACAGCGGATTGAGCTCTACCAGATTGTGAGGCCAAACGAACACATTAGGAAACAACGCTACATTGCAGCCAAGAACGTGCTGACCAAAGGTAATCCAGAATGGGTCTCCTTCGATGTGACTGAAACAGTGCGGGAATGGCTGATGAACAGAGGAACTAATCTCGGTTTGGAAATCAGTGTGCACTGTCCCTGCCACACCTTCAACCCAAATGGTGACATCATTGACAATGAGAAGGAGGTGCTGGAGGTAAAGTTTAAAGGTGGGCTTCAACAACATTTACTGATTAAGTTATATATGCCAGATAAGGAAAAGGACCAGTACCTGCCTCACCTTATCCTCATGATGATCCCACCCCACCGCCTGGAAGCTCAGTCCACACGCCGACGCAAGAGAGCGCTGGACACAAACTACTGCTTCTCaaacacagaggagaGCTGCTGTGTTCGCCGGCTCCACATAGATTTCCGCCGTGATTTGGATTGGAAGTGGATCCATGAGCCCAGTGGTTACGATGCCAACTACTGCTCCGGGCCCTGCCCTTACCTGAGGAGCTCAGATACAACACACAGCTCGCTGCTGAGCTTGTACAACACTCTGAATCCGGAGGCATCGGCCTCCCCCTGCTGTGTCCCTCAAGACCTGGAGCCCCTCACTATACTCTACTACTCTGGACGGACCCCCAAAGTGGAGCAGCTCTCCAACATGATCGTCAAGTCTTGCAAGTGTAGCTGAGAAGATGTGAAAGGCGAGGTAGTGCGGCAGGATTTTACTAGGTACTGACGAAAACCCATGCTCGTTGACTTTTGAACTCTTAGCTGTGACAATTACTAAAACTGACCCTGTGGCCTCATGGCTTAGATCTGAACACCACTCTGGAGGTCACATTTTTTAAGGATGcagattttcattttgtttcttgttttgtattttgttttcctcCCACTCTGGATGAGAAGTAGTTATTTTCAGTTCAAACCAAATGTTGCAATCATAGTATGATCTTAAAATATTTCCTTCTACATTTGTGAAGGTGGACAACATACTCTGCAGAGAGCCCTGTACAAATCTATCTGTGACAAAGTGGGAGCTGCTTCATTGACGATGACTGAAAGGGACTTATTTTGTGGTATATTTTCTGCTTCAGAGTTAAAGCAAATATTCCACAAAGTCATAGTCTCCCTGTTGTCAGTAGAGCAGCTTTCCCGTCTCTAGCCTTGGGATAATACTGTTTATAGTCACAAATATAGATTGTGCTCTACTGAATGGTCGAAGAGTCCTTTCAGGATGGATTTTACCTTGACTTAAGTTCCCTTCCTTTCAAACAGTGGACATTATCTTCAAACATAAAAGGAGAAAGGACAGACTTGCTGCTGTATCCAAAGCCATAGCTGTGGTCAGGGAAAAGGAGAGCTGAGAGAATGCCTGCTGGATTTGCAATGGAAAGtgaatgaacaaagaagttgagccaagcttttctttttttggccgGCCAGCAGCAATGGCCTTTTTTTTGCGGCTATTAGAATggatggaagaagaagaagggagtAGGGGACCTGATAGGAAGTGAAGAACTATGATGGAAACAAGCCATGAGCACAATGCCATTCACTGGAAGTTCTCATCTCTAACAGGTTCAAATTATTTATGGGACATCAAAGAATATACTGGAAAGGAACATGTGTTACGCAACAGGTTTTTATGGGATTTCTTTTACATTAATAGCAGATTTGATCCGTTATGCAACTTGTCATATAGTGATTGTTTCACTAACTGGGACAACGTTTGACGTAAACTAAGGGTACGGTTACATTTCCTTGTGATTCAAGAAGAATATGCTTTTTGTCCATATACAAATTAGTTGGACCTGTTGTATGTGATCCAGTATGTTTGACtgaagtcaactttattgtatTAAAAGGGGACCATCACCAGAAAGTTAAATCAGAGCACTTTTCTCCAGCATTAATAGGAAATGTCatgtcatttaaaatgtttacttcTTTTAAAAATCATACTCTCCTATCAACTCACCTGTGCATCACTCCATCCAGCTGACCAGGAATCGCATGTGTTCCCAAAAACACTGCTGTCTTTCATTCCCTCGGCTGCGTCTCAGTTTGTTTTAGTGCTCTTTTACAGTGTGAAGCCCTAatggaacaaaaaaaatgaagcgGGAGGGGAAAAGTCATTACATGACAGTGGCTGGATGTACAGTTAGACCTAATTTTTCTCTGAGTCAGGAGAACGATTCTGAATCCCTGTACTGTTTGACATTCACTCAGTCAGTCATCTTACCTTTAGATGACATTTAggtgacattttttttgcagtaaTATTGTTTGATTGACTTGTTGATCGTGATTgttattaaaaacacaacatgCAAAACTTGA

Function

NR:

description
PREDICTED: transforming growth factor beta-3-like

GO:

id name namespace
GO:0030278 regulation of ossification biological_process
GO:0061035 regulation of cartilage development biological_process
GO:0016049 cell growth biological_process
GO:0005615 extracellular space cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K13377 TGFB3; transforming growth factor beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
TU251109 False 2094 TUCP 0.42 3 18489816 18492858
TU251114 False 1368 TUCP 0.45 4 18493308 18506188
XM_039782052.1 True 3357 mRNA 0.44 7 18489815 18506198

Neighbor

gene id symbol gene type direction distance location
ptk2bb ptk2b coding downstream 175348 18293837 ~ 18314467 (-)
baalcb LOC103363522,LOC102076438,LOC102297435,LOC101471426 coding downstream 285870 18198485 ~ 18203945 (-)
eif2b4 eif2b4 coding downstream 307200 18177413 ~ 18182615 (-)
snx17 snx17 coding downstream 317323 18141723 ~ 18172492 (-)
si:ch211-278j3.3 LOC100692210,LOC102294113,LOC101474259,LOC103355636 coding downstream 364243 18102262 ~ 18125572 (-)
LOC120546602 NA coding upstream 152711 18658909 ~ 18667719 (-)
LOC120546605 LOC103372633,LOC101488065,LOC104964430 coding upstream 162763 18668961 ~ 18680534 (-)
LOC120546603 LOC104951063,LOC103372632 coding upstream 181609 18687807 ~ 18690956 (-)
LOC120546718 daam1 coding upstream 312883 18819081 ~ 18869609 (-)
LOC120546626 ppp1r13b coding upstream 367536 18873734 ~ 18898311 (-)
G185376 NA non-coding downstream 92645 18396888 ~ 18397170 (-)
G185368 NA non-coding downstream 171104 18318396 ~ 18318711 (-)
LOC120546287 NA non-coding downstream 303228 18183960 ~ 18186587 (-)
G185320 znf513,LOC102795572 non-coding downstream 349608 18137725 ~ 18140207 (-)
G185295 NA non-coding downstream 428467 18060389 ~ 18061348 (-)
G185454 NA non-coding upstream 130186 18636384 ~ 18636662 (-)
G185467 NA non-coding upstream 188356 18694554 ~ 18694796 (-)
G185438 LOC104951064,LOC103372631,LOC100709203 non-coding upstream 189483 18695681 ~ 18698228 (-)
G185479 NA non-coding upstream 220674 18726872 ~ 18732810 (-)
G185556 NA non-coding upstream 407615 18913813 ~ 18914471 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other downstream 576779 17911270 ~ 17913036 (-)
zgc:153284 NA other downstream 722905 17764805 ~ 17766910 (-)
tbpl1 tbpl1 other downstream 858464 17623124 ~ 17631351 (-)
LOC120547341 NA other downstream 1220181 17266359 ~ 17269634 (-)
gpatch2 gpatch2,LOC102785715 other downstream 1653832 16825652 ~ 16835983 (-)
LOC120546357 LOC106525279 other upstream 134223 18640421 ~ 18647401 (-)
abcd4 abcd4 other upstream 271932 18778130 ~ 18790373 (-)
LOC120546223 LOC102213764,LOC101481591 other upstream 398339 18904537 ~ 18907254 (-)
LOC120546238 efr3b,LOC101073163 other upstream 827857 19334055 ~ 19354316 (-)
LOC120546212 fam150b,LOC104941953,LOC100704438 other upstream 1142329 19648527 ~ 19652927 (-)

Expression


Co-expression Network