LOC120546357 (LOC106525279)


Basic Information

Item Value
gene id LOC120546357
gene name LOC106525279
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18640421 ~ 18647401 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU251180
ATAAATTGGACCTGGATAAGCAGCAGAAAAGGGGCGGATagattaatgaattaaaaattaTGAATTAATTTGTTTATATAAGTTTTTGCTAAAATCAACACTCAGTTGTTTTAAACTTTTAGTTTATAGGTGCATCAACATCCCAGACAGCCTGCAATCAGATAAAAACACCCTTTATAAGTAAAATGACTGCCTATGGCAGGCAAGTATAAGTAATTCAAACTTTTTAAATTAGGAATATGAATTCTATGCTTTTGAAGACTTTTTTGAGACCTGCAGACACCTGGTTAAAGTATTTTGGACGAGATTAAAAATTTAGTCAAGTAAAAATGGACATTATGTGATTACACGCAGCGTGAGGTGTCAAGGATTCCAGGGAAAAACTACAATAAACAATACCAAAAACAACAGGCTAAAACATAAAGTTAGAGCTAAAGTTAAAGCTGTCACCATTTGGCTGCTAGGTGTGTTATTTGTTTCCTGATGAGTGGCAGAGACACTGAACCTTCAACTCTGTGAGcataacaaataacaaaaatttaaaattttgggTTTCTTCTCATGAAACAATCAATGACGTTAGCTGCGTTGAAACCATTATGTCCCAGGTTCTACTCTGCATTATCACTGTCaagtcaaacttttttttttttatatccttTTTTGTTGCAGTGTTACATTGCTGTTTGGTTCAACAGAttacacacacgaacacacccAGCAGTGATGTTGGTGTGGGAGCTGAAATCAAACATGCGTGTCAGATGGAATAAAAACACGGACCGTCCTCTTTGTCTCGAACAGGTTTCCTTCGCACAACTTAAACAGTAAATGCTCATTTGAGCGGTGGAACTgaagtctgtgttttttttgcatgacACACTGGCATCTCCTATTATTTTAACCCATGGCTGTACTGGAAATAACACGCCAACATAAAGATTAAATACGGACGTCATCACATAGCCACCAAGGCAACCCTATCTCAGATGTTACACTGTCGTATTGAGGTTATGGTCACCTGTTAATGGCATTCAAAAAGTCCCTTAACATGTGATGTCGTCAATACAGCTGTATTGGAAAAGTCCATAATTTCAGCGTCAATGAGAATTAgatgcacaaaaaaaagttgtatgaTGTAATGCAATGCAATAAATACTACCTGACCAATGTTCATTAAACACCAATATAGCTTTTGGCATACTGAACATTATAGTGACACTTCTGCAGTTCCTAGAAGTGGTGGCGCTAAATTCTCTAACCTCATGCCTTTAGGGGAGAGACAATGTCTCAGCAAACTGTAGGATATTTATCTTTGAGATTCTGACATAGTCTGTGTGCAAAACTGAGCACACGCGATACGTAAAATAGAAAGGGTCCATCCTCTGGGGAGCACAAATGTGCAGACAAGATTTCATAGtagatttgtttgtttgattgtgATATTTGTACCAATTGGCCTATGAACAAATGGTAATGAGGAAAAAGGTCACATGGGGCTTTACAGCTTAAGTTTAAAAGTCTTCACAATTTCATAAGCAGGGATATTGTCAGAATTTGCATTTGTCAATTTTTAGGTCACTTCATTTTGCCTTCAGATTTTCATTTCTGAAAGTTTGCAGGATAACTGTGTAAGACCTCTAACGTGGTGAGACCAGTGATTACTATTCTGGGAAGGTTGATGTTTGCAAGTGGAGAATTACACAATCTTACAACTGAACAACTGTCTCCTCCTGTACTTAAGGTCTTTGACAGTGGACAGAATTTTGAGAGCAATTTTTAACCTGTCAACGTAACACTGCTTACCAGCTCCTGTATTGTCTGAATTCAATGATATTACAGTTACAACATACATTTATATAGGTATTTAGAAACAGAAAACTGaaggtttgttttaaaaagtaatttgcCATGTTTTGACTGGTTACTTACCTTGATTTCCCAGGTCTGATTCTGTAAAATATAAACCCTATGTGTGCAAAAGGTCTTATTGTCTTTAATCTTCTCCTGTGGATTCACAGGTCCCTGACAGATTCTTGGAGGTTGCCAAGATTACATTGAGAGAATTTTACATTGCCATTTCAATGGGCAAAGATCGTGATCCATCGTGGAAGAAAGCAATCTACAAGGTGATCTGTAAACTGGACAGTGACGTACCAGCTGAGTTCAAAAGTCATCACTCTGGATGAGAACCAACCAGAAGATATCCTGTGCCACAGTGGTTACTGTCACAATGTGGACTTACTTGTACCTCAATTagaaaactattttgtttttaatgaagaGCATGCTGCAGGTGAGTGACGTACATGACTGGACGTGTCCAGtctccacacatacagtatggcaGACTGATGTCTGACATTATCAAAGGCTTTACGGTTTTGATTGCATTATGAGGTCATTGGACATCATTTGCATTTTGCTATAATAACCATATTATATAGTAAcacattttgtattgtattgattGTGAAACCGTTTTATTGGTGCACACCAAACACTGTTTTTTGAGAAGCATTCTTTTTTGCACAAAAT
>TU251181
tactttttaatttttttattcgtCAACAACATTAAAATCAAGTAAGCAATCAGATCTGGATTAACAACTTTACGTCACTATtgcatttctgtaaaaaaaaaacaagatgtgcAAAAATGGCAACACAGAGATGTGGTGAAATAcagtttatttgtattttacttgCTTTATATCTGTAATACCAACATGTTTAGCAGTTTCTCTCTCAGtcaaataaattacaatatagCCTATCAAATCACACACTTTGATCATCTCACTTACCGGTCTCTCCGTTTCGTCCTCAGTTCACGCGCTGCATCACCTCTCAGCTCATCAAGTGGTTCAGCAACTTCAGGGAGTTTTACTACATCCAGATGGAGAAGTTTGCCCGGACCGCTCTTCTAGAAGGAGTGGCCGACGTGAGGGGTCTGACTGTGGGGAGAGAATCAGACCTTTTCAGAGCTCTCAACATACACTACAACAAAGCCAACGACTTCCAGGTAAACTGATGCTACACTCTAATTCTTACTGCTCTGAACGGACAAAATTCTGCAGATATCCTCCATCATACAGATTTGTCACGCATTTCTTTGTGatggatttttgttgttgttgttgctgctttgGGAGCTTTCAGAGAGGTCATATGATTGTCTCATTTTGATCCCGTGCAGTCCGACACATGATTTACTTTtgttagatgtgtgtgtgtgtgttgcactttATATTTCCTAAAAGTCTCAAAgcttaattataataatatgtcCACTCCGCTGTATCTCCTCATTTGTAACTGGTCTAGATTACAGTGGCTT
>XM_039781275.1
ttgCTTACAACACCTGCATTACAAaattaacgtttttttttcttctcactgCTGTCTTTTTTAACCCAACAAGCATGAATCCAAGTGTTTGGAGCAACGGTATGTATTCTTCCAGCGGCATTTGCCTTGACGGCTGCACTGCAGAGCACCTCTCCTCTTTTCAACCAGACCACTTGCTGTCAGATTCAGATGTGCCAGGTGATTCTGTGTTCGTACACAAAGACAGCGAGGACATGAAAATGCTACCGGAGAGTGCTTATTACAGCAGCAGGGATGCTGCTTCAAGTTTGATCTGTTCCAGTCAGCTGGAGCTCACTCCAACTAGAGACAGCACCGCTGGACATTTACCCACGAGAAGGCACCAATCTCCTGCATCCAGCTCTTGTGGCCACTATGACTGGAACTTAAACAGTGGCCATCAAGCAAAGCGTGCCAGAGTAGAAAATATAATCAAAGGCATGACCAGCTCTCCTGGTATGCACTGCACTGATGTGATGACAAATCTGCACGAGGAGTCAGATGGCATCCCGGAAAATGAAAGGATTCAAGATCAGGAGCACATGGAAAGAAGTGGATCTGACAGCCAGACGACACGAAAGCAGCAGGAGAGTCAGCATCAGAACCTCAGACAGCTCAGAACAAGGTTCAAACATGTGGACGGAGTAACCGACACTACAGACAGTAAGGACAAAAAGAATCCTACTTGGAATGATTCTTCTGAAACATCTCCCAGGGACGCATTTATAGATTCACACAGTGAGTTTGAGAGCAGCACAAGTATAAAATATCAAGGATGGAAGAAGGGAAAACTGACTAACTACTTCCAATCCAAATCTGAAAGAATAAAGCTGATAGCAGATGTTTTAAAGTACGAACTGTCCAGAGCTGTCACTAGAAGTGTTGACTCTATTTTTAAAAGCATGCCACTTCTACAGACAAATGACGAGATGAACGTAGAGACTGATATGCCTCTTTATTCATCAGTTGGTAAAGATGATAAATTAGTCCCAGATGTTCAAACCGAAGCTCTGTCTCTGGTTGTACAAAAGCCTCAACCGGAAGGAGATGACAAGTTCACCCTCCAGTCCAGATCAAGAGCTCACCATCATCCCAGACCTCCAGTCCCCTTCGGCCGGGACTCCGCTCTGCATGAAGATCAGCCGTCAGAGAAGAATCACAGCACCGCCCTTCAACATGCCCTCAGATTCTTGCACAATGGATGCTCCGAAGTTGGTCAAGCAAAGTTTGAGGCGTTTGATTGGAATTCGGTCAAAGTGAGATCGAAGGTCAACTCCAGATGTGTCAGAAGCCCCCAGACTCCCAGTGTGTCGGTGGATCCCATGCTGTTGGAAAGCCTGTGTCTCCCTCATGTCAAGATTGAGTCCGATTGCCTGGTGAATAATAACCTGTACATGCTGAATGAGGGGCTGACCACACATCATCTGAAGAAAGCAAAGCTCATGTTCTTCTACACTCGCTACCCAAGCTCACTGATACTGAAGATGTGTTTCCATGATGTGCAGTTCACGCGCTGCATCACCTCTCAGCTCATCAAGTGGTTCAGCAACTTCAGGGAGTTTTACTACATCCAGATGGAGAAGTTTGCCCGGACCGCTCTTCTAGAAGGAGTGGCCGACGTGAGGGGTCTGACTGTGGGGAGAGAATCAGACCTTTTCAGAGCTCTCAACATACACTACAACAAAGCCAACGACTTCCAGGTCCCTGACAGATTCTTGGAGGTTGCCAAGATTACATTGAGAGAATTTTACATTGCCATTTCAATGGGCAAAGATCGTGATCCATCGTGGAAGAAAGCAATCTACAAGGTGATCTGTAAACTGGACAGTGACGTACCAGCTGAGTTCAAAAGTCATCACTCTGGATGAGAACCAACCAGAAGATATCCTGTGCCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251180 True 2538 lncRNA 0.37 1 18640421 18642958
TU251181 False 797 lncRNA 0.39 1 18644376 18645172
XM_039781275.1 False 1915 mRNA 0.46 4 18640741 18647401

Neighbor

gene id symbol gene type direction distance location
ptk2bb ptk2b coding downstream 325954 18293837 ~ 18314467 (-)
baalcb LOC103363522,LOC102076438,LOC102297435,LOC101471426 coding downstream 436476 18198485 ~ 18203945 (-)
eif2b4 eif2b4 coding downstream 457806 18177413 ~ 18182615 (-)
snx17 snx17 coding downstream 467929 18141723 ~ 18172492 (-)
si:ch211-278j3.3 LOC100692210,LOC102294113,LOC101474259,LOC103355636 coding downstream 514849 18102262 ~ 18125572 (-)
LOC120546602 NA coding upstream 11508 18658909 ~ 18667719 (-)
LOC120546605 LOC103372633,LOC101488065,LOC104964430 coding upstream 21560 18668961 ~ 18680534 (-)
LOC120546603 LOC104951063,LOC103372632 coding upstream 40406 18687807 ~ 18690956 (-)
LOC120546718 daam1 coding upstream 171680 18819081 ~ 18869609 (-)
LOC120546626 ppp1r13b coding upstream 226333 18873734 ~ 18898311 (-)
G185454 NA non-coding downstream 3759 18636384 ~ 18636662 (-)
G185376 NA non-coding downstream 243251 18396888 ~ 18397170 (-)
G185368 NA non-coding downstream 321710 18318396 ~ 18318711 (-)
LOC120546287 NA non-coding downstream 453834 18183960 ~ 18186587 (-)
G185320 znf513,LOC102795572 non-coding downstream 500214 18137725 ~ 18140207 (-)
G185467 NA non-coding upstream 47153 18694554 ~ 18694796 (-)
G185438 LOC104951064,LOC103372631,LOC100709203 non-coding upstream 48280 18695681 ~ 18698228 (-)
G185479 NA non-coding upstream 79471 18726872 ~ 18732810 (-)
G185556 NA non-coding upstream 266412 18913813 ~ 18914471 (-)
G185565 NA non-coding upstream 280924 18928325 ~ 18977441 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other downstream 134223 18489815 ~ 18506198 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other downstream 727385 17911270 ~ 17913036 (-)
zgc:153284 NA other downstream 873511 17764805 ~ 17766910 (-)
tbpl1 tbpl1 other downstream 1009070 17623124 ~ 17631351 (-)
LOC120547341 NA other downstream 1370787 17266359 ~ 17269634 (-)
abcd4 abcd4 other upstream 130729 18778130 ~ 18790373 (-)
LOC120546223 LOC102213764,LOC101481591 other upstream 257136 18904537 ~ 18907254 (-)
LOC120546238 efr3b,LOC101073163 other upstream 686654 19334055 ~ 19354316 (-)
LOC120546212 fam150b,LOC104941953,LOC100704438 other upstream 1001126 19648527 ~ 19652927 (-)
ccdc167 ccdc167 other upstream 1199557 19846958 ~ 19849804 (-)

Expression


Co-expression Network