LOC120547227 (LOC104932566,LOC103364615)


Basic Information

Item Value
gene id LOC120547227
gene name LOC104932566,LOC103364615
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18705856 ~ 18711994 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU251197
GCgaccgttctgcacatgcgcgactcacatcttGTAGGCAACAGGCAAGTTGGGATCAAATATACATCCATGATAGCCTACATCCATTGATCAAATCgaacacaaatctaaccggtaTGAATTGTGCGGCGGTCGCCCGTGATCACTTCTACGTAGACTTTGCtcatcttgaacgagcctaACGTGACTGTTAACGGGTAACGTTACAACTGACTACCTGAGAGAGAAGTGTGATTCCGGGCTCAGCGGCTGGACTGAACCATGGACTGAACCTGGAACCGCCTGTGACTGGCTCCACATCCCCCTGCGGCTGCTGTGTGGAAGCCTTCTGTTCACCTGTAATGCTGTCATGTGGACCTTCTTTTCCAAGGCGCTCCGACACTGCTCCTCTTCAGCCAGGGCTACAGTCACTACCACTGCATCCAACTTCATCTCCTCAgctgTCCTGGGGACGGTGATGTTTGGAGAGAGTCATGCTGTTCTATGGTGGGTGGgaatctctctcactctgtctggACTGCTGGTGCTTCATGGATCCACACCTCAGACACTCCAACAGGAGGAGGGCAAAAAGGACAAGTGATGTAGATTTGACTCATCACAAGCATGCAGCCACTGCGCTTCAGCCACAATAACCTGTGGCTAGACTCCCTCAGAGACAATGTCTCAGGCACTTAAAAGTGTCTTAATGTAAAGTGCAGTTAAAACAGCAGACTATGTTGCACATAACTGATGGTATATTCAGTACCACCAGTCATAGTTACCAATTCATAGTCTAATGTGCGTTTATTGTTTTTTGAGGAAATTAAATGTACTTGGTGTGGTACACATGATATTGAGCAACACAATGCTTGTCTCATGCcactccccctttcataacaaaTGAACTGTTTGACGTAGACTCTTGTAGGAGACATCATTGCACTCATAAAGAGTTCCTTTCATCAGTGGTTCGCCGTGCACCATATAatatggccacgccccctttcataactcaTGAACCATTTATCATAGACACTTTTGGACACAGGATGTGGTACAACATTTGCAATGCATAATTTCCAATGCCACACAGTCCATGCAGGAAATAGTAAAGATTATTATAATGGGGTCAGCTTAAAGCAATTCATTTAAAAGTAATGTCACATTATTAACATGTTCTCAACAAAATGTTGATACTAATAGTACACCAAGTAGTGACATTGTGACAGTGAAATTGATATGGTGTTGATAATACAAAAACTACTGCAACTTAAAATTTCTAAGTACATTGTACCTGTGGGAAATTGCCAGCAGCCTGTCTGATACACTTGGAGTTGATGTCACTTTTGTACTTCACTAGACACATTTTCAGGAAACCTGTATGGGAGATGGACATTAGCTATTTTTATATAGAGTTTGGTTCATTGGTTTGAAGATGCTAACAAATATTCCATCTCCATAGTGCGAATTTTCCGTACAACTGGTTTAACTAGAATTACCTCCTCTGGGTTGTATGCCTTCGCCAATCTGTCAAGTGGAAGTTTACAGTACATCCATGTCTGTACAGacttatataatatatgtagtgGCGAGAAAGACGAGAGACCAAATTAAAGCCATCTTGAATTACCCTTCTCACCCTCTCTACAACGAGCTGTGATAGATTGGCAGCTCATTGGAGAGAGGATGAAGAACAAGATCAAAGCCTGGGAGTTGTTCCTCATCTAAGTCGAGGGTCTTATGACAAAGGATGTTGTTTGCTGTACTGTGTGGCAGATTGTGTTTTGATTTTACAATATAggga
>XM_039782718.1
cGGACACTATAGTTTGTCCAAGAGGGGTTGCCGTAGCTAGCTGTCAAAGATGGCgaccgttctgcacatgcgcgactcacatcttGTAGGCAACAGGCAAGTTGGGATCAAATATACATCCATGATAGCCTACATCCATTGATCAAATCgaacacaaatctaaccggtaTGAATTGTGCGGCGGTCGCCCGTGATCACTTCTACGTAGACTTTGCtcatcttgaacgagcctaACGTGACTGTTAACGGGTAACGTTACAACTGGTATGGACTCCTGTTCCGGTAATGTGTCAAATATGATTTTAGGGTCTTTGTACGCGTTATTAGCGGGCTTTTTGGGTGCTGTTGCCTCATTGTCTGCCAAACTGTCACTCGGTGCAGACTACCTGAGAGAGAAGTGTGATTCCGGGCTCAGCGGCTGGACTGAACCATGGACTGAACCTGGAACCGCCTGTGACTGGCTCCACATCCCCCTGCGGCTGCTGTGTGGAAGCCTTCTGTTCACCTGTAATGCTGTCATGTGGACCTTCTTTTCCAAGGCGCTCCGACACTGCTCCTCTTCAGCCAGGGCTACAGTCACTACCACTGCATCCAACTTCATCTCCTCAgctgTCCTGGGGACGGTGATGTTTGGAGAGAGTCATGCTGTTCTATGGTGGGTGGgaatctctctcactctgtctggACTGCTGGTGCTTCATGGATCCACACCTCAGACACTCCAACAGGAGGAGGGCAAAAAGGACAAGTGATGTAGATTTGACTCATCACAAGCATGCAGCCACTGCGCTTCAGCCACAATAACCTGTGGCTAGACTCCCTCAGAGACAATGTCTCAGGCACTTAAAAGTGTCTTAATGTAAAGTGCAGTTAAAACAGCAGACTATGTTGCACATAACTGATGGTATATTCAGTACCACCAGTCATAGTTACCAATTCATAGTCTAATGTGCGTTTATTGTTTTTTGAGGAAATTAAATGTACTTGGTGTGGTACACATGATATTGAGCAACACAATGCTTGTCTCATGCcactccccctttcataacaaaTGAACTGTTTGACGTAGACTCTTGTAGGAGACATCATTGCACTCATAAAGAGTTCCTTTCATCAGTGGTTCGCCGTGCACCATATAatatggccacgccccctttcataactcaTGAACCATTTATCATAGACACTTTTGGACACAGGATGTGGTACAACATTTGCAATGCATAATTTCCAATGCCACACAGTCCATGCAGGAAATAGTAAAGATTATTATAATGGGGTCAGCTTAAAGCAATTCATTTAAAAGTAATGTCACATTATTAACATGTTCTCAACAAAATGTTGATACTAATAGTACACCAAGTAGTGACATTGTGACAGTGAAATTGATATGGTGTTGATAATACAAAAACTACTGCAACTTAAAATTTCTAAGTACATTGTACCTGTGGGAAATTGCCAGCAGCCTGTCTGATACACTTGGAGTTGATGTCACTTTTGTACTTCACTAGACACATTTTCAGGAAACCTGTATGGGAGATGGACATTAGCTATTTTTATATAGAGTTTGGTTCATTGGTTTGAAGATGCTAACAAATATTCCATCTCCATAGTGCGAATTTTCCGTACAACTGGTTTAACTAGAATTACCTCCTCTGGGTTGTATGCCTTCGCCAATCTGTCAAGTGGAAGTTTACAGTACATCCATGTCTGTACAGacttatataatatatgtagtgGCGAGAAAGACGAGAGACCAAATTAAAGCCATCTTGAATTACCCTTCTCACCCTCTCTACAACGAGCTGTGATAGATTGGCAGCTCATTGGAGAGAGGATGAAGAACAAGATCAAAGCCTGGGAGTTGTTCCTCATCTAAGTCGAGGGTCTTATGACAAAGGATGTTGTTTGCTGTACTGTGTGGCAGATTGTGTTTTGATTTTACAATATAgggatatataaataaaatttattttacGTTA

Function

NR:

description
PREDICTED: transmembrane protein 42-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251197 False 1786 lncRNA 0.43 4 18705908 18711967
XM_039782718.1 True 1982 mRNA 0.43 3 18705856 18711994

Neighbor

gene id symbol gene type direction distance location
fosab LOC104951064,LOC103372631,LOC100709203 coding upstream 7752 18695655 ~ 18698104 (+)
LOC120547135 LOC104964429,LOC103372634 coding upstream 51342 18648301 ~ 18654514 (+)
LOC120546828 LOC103363571,LOC107377519,LOC101067486,LOC106919680 coding upstream 124733 18500991 ~ 18581123 (+)
flvcr2b LOC104964435,LOC107377514,LOC101468256,LOC103363569,LOC108242486,LOC100710273 coding upstream 263594 18419656 ~ 18442262 (+)
batf batf coding upstream 286696 18414012 ~ 18419160 (+)
tmed10 tmed10 coding downstream 5029 18717023 ~ 18722986 (+)
eif2b2 eif2b2 coding downstream 21334 18733328 ~ 18737691 (+)
LOC120547336 LOC104951086,LOC103372628 coding downstream 42899 18754893 ~ 18760888 (+)
LOC120546187 acss1,LOC100712210,LOC102211118,LOC102308435,LOC101486165,LOC103364973 coding downstream 49423 18761417 ~ 18779102 (+)
LOC120546186 kcnh5,LOC103364987 coding downstream 86263 18798257 ~ 18813714 (+)
G185471 NA non-coding upstream 622 18703965 ~ 18705234 (+)
LOC120546607 NA non-coding upstream 15823 18666640 ~ 18690033 (+)
G185415 LOC106525279 non-coding upstream 60702 18643419 ~ 18645154 (+)
G185414 NA non-coding upstream 65475 18636374 ~ 18640381 (+)
LOC120546827 NA non-coding upstream 241828 18443952 ~ 18464028 (+)
G185495 daam1,LOC108240128 non-coding downstream 107090 18819084 ~ 18821146 (+)
G185589 NA non-coding downstream 302732 19014726 ~ 19019533 (+)
G185590 NA non-coding downstream 310702 19022696 ~ 19023030 (+)
G185591 kcnk2 non-coding downstream 312270 19024264 ~ 19024578 (+)
G185592 kcnk2 non-coding downstream 331230 19043224 ~ 19043548 (+)
ylpm1 ylpm1 other upstream 70804 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 565596 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 650930 18020956 ~ 18054926 (+)
G185237 NA other upstream 788608 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 1012222 17674393 ~ 17693634 (+)
LOC120546624 prox1 other downstream 492160 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 642622 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 655726 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 717601 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 860579 19572573 ~ 19620783 (+)

Expression


Co-expression Network