LOC120546223 (LOC102213764,LOC101481591)


Basic Information

Item Value
gene id LOC120546223
gene name LOC102213764,LOC101481591
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18904537 ~ 18907254 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU251322
TTTATCGGTATTCTGACTCAACCAGTGATGAGCTCACTAACGAGACTTTAGACTACACAAATGGGGACTCAGGGCGCTTCTGGGAGCGAAGACTGTCCTTTCTGCCAAATAGCGAACAACCAGACTGACGCAGAAATCCTGCTAAGACGATGAGCTGCTTTGTTTTCGTGACATAAAACCTAGCGCCACACATCATTACCTTGTTGTTCCCAGGACGCATATCAACAACTGCAAAACTCTCCAGGAGGACGACATACCTCTAGTGGAGCGGATGGAAAAAATGGGAAGGAGTATACTAGAGAAGAATAAAGTCAGCAACCTGAATGACGTCAGGATGGGGTTCCATGTGCCTCCATTCTCATCTGTTccacacctccacctccacGCTCTGGCTCCAGCCAGTACGATGAACTTCAAGTCGCAGCTTCGCTACGGGCAGCAGTCTCACTGGTTCATCCCAGTCGACAACATTCTTTCTCAATTGAAGACTCGCGGCGAAGTCAAATGAAGAGATACATGAGTCTGAAGGTGCAACGGCCTTTTTTTATGTTGACAGGTTATTTATTTTCATCCCGCTTCACTGAGTGCAATTTTACATCAGTTCTCTATCTGACTTGACATTTTTTGTGTAAATGAGTTATGATGTATATTCCTCCATGCTGTTTGGTGGTTCAGTTGTGGAGAAAAGTGGAATAAAAtggctctttttcttttaaggtGGAAGCTGTAAAAGTTCAACCTTTCcacaaatatatgtttttaataattcaTCCTAGTGCTATCAAATGTCATGTTGTGCAATGAGGAGAGAA
>XM_039781002.1
GCGGTTCCCGTGAACGCAGCACTGGACCGACTCGATCAGCGGCTAGTTGTCCGAGGCGTCCTGGCTCCTGATCGCAGACACGCCCACACTTTATCGGTATTCTGACTCAACCAGTGATGAGCTCACTAACGAGACTTTAGACTACACAAATGGGGACTCAGGGCGCTTCTGGGAGCGAAGACTGTCCTTTCTGCCAAATAGCGAACAACCAGACTGACGCAGAAATCCTGCTAAGTGACGATGAGCTGCTTTGTTTTCGTGACATAAAACCTAGCGCCACACATCATTACCTTGTTGTTCCCAGGACGCATATCAACAACTGCAAAACTCTCCAGGAGGACGACATACCTCTAGTGGAGCGGATGGAAAAAATGGGAAGGAGTATACTAGAGAAGAATAAAGTCAGCAACCTGAATGACGTCAGGATGGGGTTCCATGTGCCTCCATTCTCATCTGTTccacacctccacctccacGCTCTGGCTCCAGCCAGTACGATGAACTTCAAGTCGCAGCTTCGCTACGGGCAGCAGTCTCACTGGTTCATCCCAGTCGACAACATTCTTTCTCAATTGAAGACTCGCGGCGAAGTCAAATGAAGAGATACATGAGTCTGAAGGTGCAACGGCCTTTTTTTATGTTGACAGGTTATTTATTTTCATCCCGCTTCACTGAGTGCAATTTTACATCAGTTCTCTATCTGACTTGACATTTTTTGTGTAAATGAGTTATGATGTATATTCCTCCATGCTGTTTGGTGGTTCAGTTGTGGAGAAAAGTGGAATAAAAtggctctttttcttttaaggtGGAAGCTGTAAAAGTTCAACCTTTCcacaaatatatgtttttaataattcaTCCTAGTGCTATCAAATGTCATGTTGTGCAATGAGGAGAGAATTACTGCTTTTTGGCTCTTTGGatttttttggatttttttggaTTTTTTGAAAATTTAAATTCAAACCTTAAAGACTCCCTCAGCTTATCCCCTGATTTGGAGGACTGAGCTCCTTCTGGACTGCTGCAGTCGACACCAgct

Function

NR:

description
PREDICTED: histidine triad nucleotide-binding protein 3-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251322 False 812 lncRNA 0.44 5 18904679 18907165
XM_039781002.1 True 1045 mRNA 0.45 5 18904537 18907254

Neighbor

gene id symbol gene type direction distance location
LOC120546626 ppp1r13b coding downstream 6226 18873734 ~ 18898311 (-)
LOC120546718 daam1 coding downstream 34928 18819081 ~ 18869609 (-)
LOC120546603 LOC104951063,LOC103372632 coding downstream 213581 18687807 ~ 18690956 (-)
LOC120546605 LOC103372633,LOC101488065,LOC104964430 coding downstream 224003 18668961 ~ 18680534 (-)
LOC120546602 NA coding downstream 236818 18658909 ~ 18667719 (-)
LOC120546204 NA coding upstream 1403 18908657 ~ 18913081 (-)
LOC120547084 LOC103364980,LOC104947346 coding upstream 7613 18914867 ~ 18932089 (-)
LOC120546312 NA coding upstream 50207 18957461 ~ 18962093 (-)
LOC120547184 NA coding upstream 107741 19014995 ~ 19046063 (-)
snx9b snx9,LOC100707634,LOC106957401 coding upstream 170024 19077278 ~ 19095705 (-)
G185479 NA non-coding downstream 171727 18726872 ~ 18732810 (-)
G185438 LOC104951064,LOC103372631,LOC100709203 non-coding downstream 206309 18695681 ~ 18698228 (-)
G185467 NA non-coding downstream 209741 18694554 ~ 18694796 (-)
G185454 NA non-coding downstream 267875 18636384 ~ 18636662 (-)
G185376 NA non-coding downstream 507367 18396888 ~ 18397170 (-)
G185556 NA non-coding upstream 6559 18913813 ~ 18914471 (-)
G185565 NA non-coding upstream 21071 18928325 ~ 18977441 (-)
G185619 rps6kc1 non-coding upstream 202255 19109509 ~ 19110183 (-)
LOC120546625 NA non-coding upstream 282982 19190236 ~ 19203995 (-)
G185644 NA non-coding upstream 290498 19197752 ~ 19197969 (-)
abcd4 abcd4 other downstream 114164 18778130 ~ 18790373 (-)
LOC120546357 LOC106525279 other downstream 257136 18640421 ~ 18647401 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other downstream 398339 18489815 ~ 18506198 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other downstream 991501 17911270 ~ 17913036 (-)
zgc:153284 NA other downstream 1137627 17764805 ~ 17766910 (-)
LOC120546238 efr3b,LOC101073163 other upstream 426801 19334055 ~ 19354316 (-)
LOC120546212 fam150b,LOC104941953,LOC100704438 other upstream 741273 19648527 ~ 19652927 (-)
ccdc167 ccdc167 other upstream 939704 19846958 ~ 19849804 (-)
G186006 NA other upstream 1655183 20562437 ~ 20567479 (-)
syne1a syne1,LOC102291171,LOC103355013,LOC102194633 other upstream 2105138 21012392 ~ 21154812 (-)

Expression


Co-expression Network