G185599 (snx9,LOC106928315,LOC103138599,LOC106957401)


Basic Information

Item Value
gene id G185599
gene name snx9,LOC106928315,LOC103138599,LOC106957401
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19082696 ~ 19083784 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU251378
acaacaacaacaacaacaaaagactTGTCTATCCTTCAGCAATAAAGGGAGAGTGGAGAAGAAGTGGAGGAGGAATAGCACACCTTCTCATCCTTATAGGTGAGGAAAATCTGGAATACTTCACTGCTGGAAACAACAGGGTGCCTGCACATCCTGGTCATCCAGCCCTGCAACCGCTCCATACGCATCTTAATAAACTCTTCCTCAAATCGTCCTGGAGTAGAAGGGAGGATGCACAGAAAAGATTTTATATAATCATGTTTTTGTCAGCAGtgttcatcttttttttgtatgtcttgTTCACAGAGTCAGGCACTTGCCTGTCACCTGCTTGTCTGGTAAAGAGGGGATGGGGATGGCTGACCCAAATTTGTCTAGCAGCCTCTCATACAGCCAATCAAAGTGCTTGTATCTGTGATTGACTGGTCGGTTTGTGGTGTTGGGTGTGATTTGGTACTCGATGTAGCTCTTGAGGCCGTACATCTTTGAGCCTTTCTTGGGATCAGCCACCACACAGTCCAGCTGAGTTTCTGGGTAAGACCACACCGGACCAACTTCTCCAATCTGAAAACACAAGGTTTAGAAACCTGTTGTTCTGCATTTTATGGCATATAAACATAGATTCACACTGGCAATAAGAGGAAACCATGCAATAATACTAGTGAATATACCATTAGTATAACATCTGTTACTGCAAtaatcaaccttgtttttttgtgtttcttttgttaTGATACAGCATAttgtgtttagtttagttataTAGGTTAAATTGATTTACCACAACCACTGATATAACAAGGAAAGACATCTAATGATAATCTGTGAACAATTTGGGTGGATATTTAGAGATAACCTACATAGATTGGCAGCTTTTCTTTGCCCTTAGCGATCTGCTTGCAAAGGAGGTAGAGCTCTGGGCCAGACTTGGAGAAGCCAGGAA

Function

symbol description
snx9 Enables several functions, including 1-phosphatidylinositol binding activity; Arp2/3 complex binding activity; and protein homodimerization activity. Involved in several processes, including cytoskeleton-dependent cytokinesis; plasma membrane tubulation; and positive regulation of cellular protein metabolic process. Located in several cellular components, including cytoplasmic vesicle membrane; cytosol; and trans-Golgi network. Is extrinsic component of cytoplasmic side of plasma membrane. Colocalizes with clathrin-coated vesicle.

NR:

description
PREDICTED: sorting nexin-9-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251378 True 943 lncRNA 0.42 2 19082696 19083784

Neighbor

gene id symbol gene type direction distance location
si:ch211-203k16.3 LOC102290548,LOC102780528,LOC100708179,LOC101478729,LOC102192128,LOC103369909 coding upstream 6214 19070669 ~ 19076482 (+)
prkg3 LOC104947339,LOC103364985,LOC100708987,LOC101479945 coding upstream 79666 18990946 ~ 19003030 (+)
LOC120546316 LOC104947340,LOC103364984,LOC107377588,LOC106510778 coding upstream 92922 18982177 ~ 18989774 (+)
ctsbb ctsb,LOC104947341 coding upstream 101518 18977830 ~ 18981178 (+)
fdft1 fdft1 coding upstream 105245 18966206 ~ 18977451 (+)
moxd1l NA coding downstream 13275 19097059 ~ 19102420 (+)
rps6kc1 rps6kc1 coding downstream 18799 19102583 ~ 19126659 (+)
smyd2b smyd2,LOC103360985 coding downstream 176478 19260262 ~ 19269398 (+)
LOC120546239 NA coding downstream 244223 19328007 ~ 19333616 (+)
parp1 parp1,LOC102777090 coding downstream 307221 19391005 ~ 19403199 (+)
G185593 NA non-coding upstream 36589 19045414 ~ 19046107 (+)
G185592 kcnk2 non-coding upstream 39148 19043224 ~ 19043548 (+)
G185591 kcnk2 non-coding upstream 58118 19024264 ~ 19024578 (+)
G185590 NA non-coding upstream 59666 19022696 ~ 19023030 (+)
G185589 NA non-coding upstream 63163 19014726 ~ 19019533 (+)
G185656 NA non-coding downstream 194323 19278107 ~ 19279357 (+)
G185696 NA non-coding downstream 469490 19553274 ~ 19554235 (+)
G185711 NA non-coding downstream 568453 19652237 ~ 19652575 (+)
G185716 tmem18 non-coding downstream 608352 19692136 ~ 19693056 (+)
G185793 NA non-coding downstream 624547 19708331 ~ 19708930 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 370702 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 447644 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 942436 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 1027770 18020956 ~ 18054926 (+)
G185237 NA other upstream 1165448 17916853 ~ 17917248 (+)
LOC120546624 prox1 other downstream 120370 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 270832 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 283936 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 345811 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 488789 19572573 ~ 19620783 (+)

Expression


Co-expression Network