G185716 (tmem18)


Basic Information

Item Value
gene id G185716
gene name tmem18
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19692136 ~ 19693056 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU251528
gtctgagaaaagCACCTACATGCAATCAGCCAAACACcttccccaaaggcagattctggcccatatGGCATAGGgcaatatatatacagtacagtatacccactacaatacataaGACTAGCTACACAACTGATGTACATGTATGTTAGTTTTTAATTATACTCGCTACCAATCAACAGTTTACATTAGGGTAAGGTAGGTATCTTTCTTATTTACTTACCCATGAGAAGGAAGTGACATATCTGAGCTCTGTAATACCTGCACGTCACCACGgttagaaacaaacacacaacatgaAACACTAACAGCCCGATTAGCCAAGGCTCCGACCACTGCACCTACGAACAGTAAACAAACAACAAGAGAAATGTCCATATCGATGTAATTCTTAAATTGCTGAACCCATCGATGGGGATAGAGCTGCTATTTTCTGCTTTCTGGTCCGTCATCTTCACAAAACTCTGCTCAGCATAGGCATGTAAACAAGTAAAAAGACTACGGAAGGAGCACTTCTGTCGCCAAAGAATTACGTCACCGAGGTGAATACGTAGTTAATTGCTTATTTAAACGGCGAGTCCATGgtaagttattaaaaaaatgcaCCCCCATACAGATGGCAAGAAGGGGGAAATTAGCTATAAgtacaaaaacctttttttttgtaccaGGATGTAAACATGCTGCTGTGAAATTGGGATTTTTTAACATGTGGGTAAATCATGGtgtatatactgtctatgggactGACCCACTTCAAGTGGCCATTTGAGGAACTGTACTTGAG

Function

symbol description
tmem18 Predicted to enable DNA binding activity. Predicted to be located in nuclear membrane. Is expressed in gill; heart; liver; nervous system; and pleuroperitoneal region. Orthologous to human TMEM18 (transmembrane protein 18).

NR:

description
transmembrane protein 18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251528 True 784 lncRNA 0.40 2 19692136 19693056

Neighbor

gene id symbol gene type direction distance location
si:ch211-225h24.2 tdrp coding upstream 94029 19584702 ~ 19598107 (+)
lin9 lin9 coding upstream 279438 19403856 ~ 19412698 (+)
parp1 parp1,LOC102777090 coding upstream 288937 19391005 ~ 19403199 (+)
LOC120546239 NA coding upstream 358520 19328007 ~ 19333616 (+)
smyd2b smyd2,LOC103360985 coding upstream 422738 19260262 ~ 19269398 (+)
LOC120546417 NA coding downstream 6666 19699722 ~ 19703391 (+)
si:dkey-119f1.1 smc6 coding downstream 19608 19712664 ~ 19731224 (+)
fig4a fig4,LOC102794534 coding downstream 52121 19745177 ~ 19830843 (+)
LOC120546286 gpr6,LOC104945012 coding downstream 141429 19834485 ~ 19837398 (+)
cdc40 cdc40,LOC103135076 coding downstream 226417 19919473 ~ 19944031 (+)
G185711 NA non-coding upstream 39561 19652237 ~ 19652575 (+)
G185696 NA non-coding upstream 137901 19553274 ~ 19554235 (+)
G185656 NA non-coding upstream 412779 19278107 ~ 19279357 (+)
G185599 snx9,LOC106928315,LOC103138599,LOC106957401 non-coding upstream 608352 19082696 ~ 19083784 (+)
G185593 NA non-coding upstream 646029 19045414 ~ 19046107 (+)
G185793 NA non-coding downstream 15275 19708331 ~ 19708930 (+)
G185794 NA non-coding downstream 16158 19709214 ~ 19709512 (+)
G185795 NA non-coding downstream 18471 19711527 ~ 19711832 (+)
G185799 NA non-coding downstream 42462 19735518 ~ 19735724 (+)
G185800 ak9 non-coding downstream 42784 19735840 ~ 19736056 (+)
acp1 acp1 other upstream 43980 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 71353 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 150304 19429595 ~ 19541832 (+)
acbd3 acbd3,LOC102799892 other upstream 264647 19354616 ~ 19427489 (+)
kif25 LOC104961976,LOC100703631 other downstream 159587 19852643 ~ 19860217 (+)
gtf2h5 gtf2h5 other downstream 1477892 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 2251687 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 2292723 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 2587911 22280967 ~ 22301585 (+)

Expression


Co-expression Network