LOC120546238 (efr3b,LOC101073163)


Basic Information

Item Value
gene id LOC120546238
gene name efr3b,LOC101073163
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19334055 ~ 19354316 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU251532
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgcatgCGTCTACATGAGCATTCATGTAGATGTGTGTCTTTATCGTCATTCTCCAAGACCAAACTCTTCAAACACAGTTTACAGTCTTTGTCCAGTGACCCTTTCCAATACGTTAACGAAGAACAAGCTATTTCAGAGCAGTGTGCAGCTGTCTAAACCTTCCAGTGACACTTTGTAAAATTGTCATTTCAGCGTCTTGCAACTTCGCAGTAAAGACTACTAGTGTGCTTGTTGTCATTGCATAGTGTATTGTAATATTAACTGACGGTAATCCAATCTTACTTTTGTCATTACATGTCTGATTAATAGATCTGTTTACAACGTAGTGCTGTAGGTCAATTCTATTCATTCTGTGAACTTTGCACTTTAAAAACTGGATTACCTAGTGACAAAGGCAGCTTTTAAATGGAGAAAATGCCTTATGAGTGTCATACCTGACTTTGCATGCTAGTGTTGCTGTAATGTATAATAAATGTGTCTGT
>TU251533
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgcatgCGTCTACATGAGCATTCATGTAGATGTGTGTCTTTATCGTCATTCTCCAAGACCAAACTCTTCAAACACAGTTTACAGTCTTTGTCCAGTGACCCTTTCCAATACGTTAACGAAGAACAAGCTATTTCAGAGCAGTGTGCAGCTGTCTAAACCTTCCAGTGACACTTTGTAAAATTGTCATTTCAGCGTCTTGCAACTTCGCAGTAAAGACTACTAGTGTGCTTGTTGTCATTGCATAGTGTATTGTAATATTAACTGACGGTAATCCAATCTTACTTTTGTCATTACATGTCTGATTAATAGATCTGTTTACAACGTAGTGCTGTAGGTCAATTCTATTCATTCTGTGAACTTTGCACTTTAAAAACTGGATTACCTAGTGACAAAGGCAGCTTTTAAATGGAGAAAATGCCTTATGAGTGTCATACCTGACTTTGCATGCTAGTGTTGCTGTAATGTATAATAAATGTGTCTGTAACCAGAAAATGTCTGAtctgtttttgatttattttcttattgACGATAGGGAAAGCCTGATAAAGAAGAATGTTTTCTAGTGTGATCTGCCTGAGATACAGGAAACTGTggagcatcatcatcatcatcattatcatcatcatcatcatgcagcatatgaaaaataatcttaacTTTGAGTGCTCAGTTATTTGTAGTGTTCAACACAGTATTAAGCAATTGTTCCTCAACTGTTCTTCTAGTGTTATTCATTTCCTTGCCTGTAATGGACtgtgttttgtttatgttaCACTACTAGCATCAGTACTGTGTATTTGCCATTCTCATGCCTGTCATGTGATTGGGTGGTTTATCAGAATTAAATCTGTGTATTTTAGAGGTGCTTTTTCTCCTACTGTAACAGCCTTCAACATAATGTAATATCCAAAAACAATGGAAAGGTTAACTACTTCAGCCCTAAAACTCTGCTTCACAATTTTGACTGTAGGGACGACTGTGGTATTGAAATGAACTAAATAGCCTAAAAATtgacaatacatttaaaaaaaagtggtaggaaaatatatatttaaaatgaagTCAACCACTTCGGGCAGGTTTGTGTTACAGTGGTTTACTAGTGGCGTGGCTCtaagaatatataaaaaaactattGTCATGAAAGTTTGTACATGTTTATGTTCCCTAGAAGATAATTTGTAAAAACGtagatcctctgacttttcattaAACACTATTATCAGGTCAAAATGATGCATGGTTCTGCTACACTGGTAGCAAAGCATGGGGAGGGcttggaaaaaaaatgtgtatctACGAAAGGCTGGCCCTGCAGAAAAGGTTTGGGAACCACTAGGCTAAGGTTTTAAGCCctcacacttttcttttttttttttttttttggtctgtaTCCAAATCAAGGGTCTAGGATAGAAGGGGGTTGTATGTTGTGCTGACTGTAAAGCCCTTTGGCAAAATTGTGATACATattaaattgacttgacttgtcCATCATTTCCCTGTCGATAGTTTTAACTCATGACTGCAATCCCGGGCGATGTATATTGTTTAATTAGCATATAAAAGGTTTTCTGAAGG
>XM_039781029.1
GCAACAGAGACTGGACGAAAAAAGAAGACTTGTTTActtgttatttttctttctctttgtttttattgcatttgtgCCAGTCATGCTGCACAAGTCTAATTgaccatctctctctttcttttgtcTTCCTCAGGGGTTTGCCGTGGTTGCGGGGCGCTCAGGCCTCGGTACAAGAGACTGGTAGACAACATCTTCCCAGAAGACCCAGAGGATGGGCTGGTGAAGGCCAACATGGAGAAGCTGACATTCTACGCCCTGTCAGCTCCAGAGAAGCTTGACCGTATCGGAGCCTACCTGTCTGAGAGATTGTCAAGGGATGTGGCCCGACACAGATATGGgTATGTGTGCATAGCCATGGAAGCCCTGGACCAGCTGCTGATGGCCTGCCACTGCCAGAGCATCAACCTGTTTGTGGAGAGTTTCCTCAAGATGGTGCGCAAGCTGTTGGAGTCAGACAAACCCAGCCTGCAGATCCTAGGAACAAACTCTTTTGTGAAGTTTGCCAACATAGAAGAGGATACACCATCGTACCACCGCAGTTATGACTTCTTTGTGTCGCGCTTCAGTGAGATGTGCCACTCTAGCTACGAGGACCCTGACATCCGTACTAAgatccgCATGGCAGGTATCAAGGGCCTGCAGGGCGTGGTGAGGAAGACTGTGAATGATGAGCTGCAGGCCAACATCTGGGACCCTCAGCACATGGACAAGATCGTCCCCTCTCTGCTTTTCAACCTGCAGAGTGGAGTGCGCACAGAGAGCCGCTCCCCCTCTCCGCTGCAGGCGtcggagaaagagaaggaaagccCGGTGGAGCTGACGGAGCGCTGCTTCAGGGAGCTGCTGGGACGAGCCGCCTATGGCAACATCAAGAACGCCGTCACGCCCGTGCTGATGCACTTAGATAACCATTCTCTATGGGAGGGGAAGACCTTTGCAGTGCGCTGCTTTAAAATCATCATGTACTCCATCCAGTCCCAGCACTCTCATTTGGTAATCCAGCAGCTTCTCGGTCACCTGGACGCTAACAGCAAGAATTCAGCCACAGTGCGTGCTGGGATAGTGGAAGTTTTGCTGGAGGCAGCCGCCATTGCAGCCAGCGGCTCTGTAGGTCCCACAGTGTTGGAGGTGTTTAACACCCTGCTGCGGCAGCTCCGTCTGAGCGTGGACTACGAGTTGACCGGCTCCTACGACGGCAACATCGGCACAAAGATCATCAAAGCTCACGAGGAGAGGCAGCTGCAGGAGGCTGTCATCAGGaccattggtTCATTCGCCAACACTCTACCGACTTACCAGAGGTCCGAGGTCATGCTCTTCATCATGGGCAAGATCCCTGTCCCTGGGATTCACCCAGCTCTGCCCTCCGCAGGCTCTGGGCCTGAGGGTACCAGGATGATTCAGATTATGTTACTTAAATCCTTGGTCCAGGTGACGGCAGGTTTCCAGACCACCAACATGCTAACGGCGCTGCCCAACTCTTTCCTGGAGCCGTTGCTGTCCTTCTCTCTCACAGAGGATCCAGAAATCCGGCTGCTGGTTCTCCAGATCCTTCTAAGTCTGATCGACAGGCACGACAACATGCTCAAGTTCACCAACAtaagCATCATCTCCGACATCTCTGTGCTCAAGCTCAAAGTTGACAAGTGTTCCAGGCAGGACAActtattcatgaaaaagCACGGCCAGCAGCTATACCGACACATCTACTTGGGCTGTAAGGAGCAGAGCAGCGGTCGGCAGCACTACGAGTCGCTCTTCGCTCTGTTGGGTCTCCTCAGCGTGGAGCTGGCTAATGAAGAAGTGGTGGTGGACCTCATTCGCCTGGCACTCGCCTTGCAGGACCTGGCTTTGTCCACTGACGAGCCTCTGCCCGTTTATAACCGCTGTGCTGTTCATGCGCTCGCCGCCGCCTACCTCAACCTCATCTGCCAGCTCACCACCGTCCCAGCCTTCTGCCAGCACATACACGAGGTAATTGAggtgagacagaaagaaagtccCTACCTTTTGCCTGAGGATGTCTTCGTTGATAATCCCAAGCCGCCGCCTTCACTGGAGAAGGTAGAGGGGGATGTTTTGTTCCTCCAGTCGAAGATCACTGAGGTCCTCGGAGGTAGCGGCTACAACACAGATAGACTGGCTACGCCTTATGTACCCCAGTATACTGATGAGGACCGTCTATCCAAGAGAAAGAGCATCGGAGAGACCATCTCACTGCAGGTGGAGGTGGAGTCCCGAAACAGtccagagaaagaggagAGGACACCAGCAGAGGAGATCACATTTGAAACCCTGAAAAATGCCATTGtggacagcgTGGGTatggaggagcaggagagggagcGGAGGAGACAAGTGGTGGAGAAGTTTCAGAAGGCCCCCTTCGAGGAGATAGCTGCCCACTGTGGTGCCAGGGCCACACTACTGCAGAGCAAACTAAATCAGATCTTTGAGATTACAATCAGACCCCCGCCCAGCCCATCTGGAACCATTTCGTCCGGTTACGGCCAAAGCCAGAGTCGATCTATACCCATCTACGAGATGAAGTTTcctgacctgtgtgtgtactAGACCAGAAAGCGAAGTTACAGAACTATTTAACATTTGAGTACAGGAAAGGGATTTTGGGAGGGGCAACCGGTCCTCACTGTTAAGGCGTCTTGATCATATAATCATAAAACCAcaggggaagaggaggaaacCAAAGTTGTTTGAAGCCAACTCAAGAACAAGGCACTTCTTGATTAACTTAGTTGTCTGAAATGACAATTCTTTTGCCCTGGAGCCAAAACAATCCGGCTAATGTCAAAACAATGCAGCAGTAAAAcaaacttttattttacttattcCACTCAGTTCTCCTTAGATGTCTGTAGAAACTCCACCGGTTGGATTTTGAAATTAGAAATTGCCAAGAACTGTGAGGGAAAATTTAAAGTGGCAGACTGAAAGTTATTTTATTGGCTTTAGAATGAATTGACTCATTGCATGCCCTGTTACTTGACATTTTTGATAGCACTGCAATTCTTGGACATTCTTTTGACCCAATTGTCCCTTACAGGGTGCCATACTACCCTTGATGACAATTAGATTGACTGAtcttaatatttatatttttattgttttcttgtttgttgATTTTATGGACAGAAAGAGCGTATGTGAATTAGATGCATTTTAATTTTCCTGAGACCGtatttttgtgtatgtttgaaTGAAATATGGATACAAATATAAACCTAATCCTTTCCATCTCCCATGTTACTCAGCTCTTGAACATCTGACTTCAGTGTTTAATagtaccttttttttgttttgcctttttAGTGTTAGCCAGAAGTGCTTTTTCTTTCATGACAGGCATTTATTTCCTgcacatagttttttttcttcttctaattattatttagttttaagTGGTTTAAATGACAGATAACTGTTGATCTGTGTGCTATCCTCCCAAAGTGAGTGTGCCTTACAGGTGACTCAAGTTGAAacataaagaaaaacacacactgcgCCACAATCATGACCACACTAAACTTCTGAAGATCTGAAGTGTTTACTGTGATGTTTACCAGATCAAACACTAAAAGTTAACTACGGATCCTTTATTTTTCTCCTTTCCATATGAATGTGTATATACAGAGAAATATATAAATCTTTAAGCTGATGTACAAAATAgggatgtttttgtgtttgtgtagatatactgtacattgatTCTAATTATGGACTCCCACTGCACTGATTGTGTCCGTAGATAAGGGAGAAAGGTATTAGTTAGTATTTATTAAAGATAAGTAACCAGCAACACATGAAATCAAAAAGGTGAATTGACAAGGGTGTAAACAGCCCACAGTAGAAATCTAAATCATCTTGAGGCCAGTAGATCACACTAGTGAAGTTTGAAAGTGTCCTGCTTAAGAATTAATGAACCTGAACTAATCAACTTCCATTATTAACCACTGATTTTGAGACAGGTTTTTAGCACTAGAATCATGACCTGTATTGTTGCTGCCATTACATTCTTAATCCTGCTGGAATAAGTTTGCACTCTGTTTTTACGCCATaccgctgctgctgcagcctACAAGCAGTGCACCTCATTCAGCAAGATTTAATAAGTCTAAAAGCCATTACGTGTGCATGTGCGCACATACGCATAGGTATAAAAACAAAGTATAATGGCAATAATTTGCCACTAGCCTGGCTAACAGCCCAACTGTTTGGTAGCAGatcctttttgtgttttaaattgtaccctctgttgttgttgtggtggtgCTGTGATGGTCACTTTTGTGATGTTGTAAGAGATCGACCCTCCCGCTTTTGTGAGTTAACTGCATCGGACGTGAAACGAGCTGCAGCCATCTTGTTTGATGTAAACGACAGTGTATGGTTTGTCCCTGATTGTCGTGTCACAGTCCAGTTGGTTGtttgttttatcattttttaCAATGTAGTGTCCCCTGTATGTATATTCATGTTCACACATGCCAGTGTATCAGATCTGTTCACGCttccctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgcatgCGTCTACATGAGCATTCATGTAGATGTGTGTCTTTATCGTCATTCTCCAAGACCAAACTCTTCAAACACAGTTTACAGTCTTTGTCCAGTGACCCTTTCCAATACGTTAACGAAGAACAAGCTATTTCAGAGCAGTGTGCAGCTGTCTAAACCTTCCAGTGACACTTTGTAAAATTGTCATTTCAGCGTCTTGCAACTTCGCAGTAAAGACTACTAGTGTGCTTGTTGTCATTGCATAGTGTATTGTAATATTAACTGACGGTAATCCAATCTTACTTTTGTCATTACATGTCTGATTAATAGATCTGTTTACAACGTAGTGCTGTAGGTCAATTCTATTCATTCTGTGAACTTTGCACTTTAAAAACTGGATTACCTAGTGACAAAGGCAGCTTTTAAATGGAGAAAATGCCTTATGAGTGTCATACCTGACTTTGCATGCTAGTGTTGCTGTAATGTATAATAAATGTGTCTGTAACCAGAAAATGTCTGAtctgtttttgatttattttcttattgACGATAGGGAAAGCCTGATAAAGAAGAATGTTTTCTAGTGTGATCTGCCTGAGATACAGGAAACTGTggagcatcatcatcatcatcattatcatcatcatcatcatgcagcatatgaaaaataatcttaacTTTGAGTGCTCAGTTATTTGTAGTGTTCAACACAGTATTAAGCAATTGTTCCTCAACTGTTCTTCTAGTGTTATTCATTTCCTTGCCTGTAATGGACtgtgttttgtttatgttaCACTACTAGCATCAGTACTGTGTATTTGCCATTCTCATGCCTGTCATGTGATTGGGTGGTTTATCAGAATTAAATCTGTGTATTTTAGAGGTGCTTTTTCTCCTACTGTAACAGCCTTCAACATAATGTAATATCCAAAAACAATGGAAAGGTTAACTACTTCAGCCCTAAAACTCTGCTTCACAATTTTGACTGTAGGGACGACTGTGGTATTGAAATGAACTAAATAGCCTAAAAATtgacaatacatttaaaaaaaagtggtaggaaaatatatatttaaaatgaagTCAACCACTTCGGGCAGGTTTGTGTTACAGTGGTTTACTAGTGGCGTGGCTCtaagaatatataaaaaaactattGTCATGAAAGTTTGTACATGTTTATGTTCCCTAGAAGATAATTTGTAAAAACGtagatcctctgacttttcattaAACACTATTATCAGGTCAAAATGATGCATGGTTCTGCTACACTGGTAGCAAAGCATGGGGAGGGcttggaaaaaaaatgtgtatctACGAAAGGCTGGCCCTGCAGAAAAGGTTTGGGAACCACTAGGCTAAGGTTTTAAGCCctcacacttttcttttttttttttttttttggtctgtaTCCAAATCAAGGGTCTAGGATAGAAGGGGGTTGTATGTTGTGCTGACTGTAAAGCCCTTTGGCAAAATTGTGATACATattaaattgacttgacttgtcCATCA

Function

symbol description
efr3b Involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Located in actin cytoskeleton; cytosol; and plasma membrane.

NR:

description
PREDICTED: protein EFR3 homolog B isoform X4

GO: NA

KEGG:

id description
K21842 EFR3; protein EFR3

RNA

RNA id representative length rna type GC content exon number start site end site
TU251532 False 526 lncRNA 0.38 1 19335154 19335679
TU251533 False 1625 lncRNA 0.37 1 19334055 19335679
XM_039781029.1 True 6196 mRNA 0.44 22 19334139 19354316

Neighbor

gene id symbol gene type direction distance location
LOC120546612 ptpn14 coding downstream 21016 19269936 ~ 19313039 (-)
snx9b snx9,LOC100707634,LOC106957401 coding downstream 238350 19077278 ~ 19095705 (-)
LOC120547184 NA coding downstream 287992 19014995 ~ 19046063 (-)
LOC120546312 NA coding downstream 371962 18957461 ~ 18962093 (-)
LOC120547084 LOC103364980,LOC104947346 coding downstream 401966 18914867 ~ 18932089 (-)
LOC120546711 LOC102214046 coding upstream 39425 19393741 ~ 19395361 (-)
mixl1 mixl1 coding upstream 58452 19412768 ~ 19414710 (-)
hebp2 LOC102300854,LOC102199375,LOC101470463,LOC102798748 coding upstream 190459 19544775 ~ 19552702 (-)
cmtr1 cmtr1 coding upstream 198632 19552948 ~ 19566197 (-)
fbxo25 NA coding upstream 244022 19598338 ~ 19615156 (-)
LOC120546625 NA non-coding downstream 130060 19190236 ~ 19203995 (-)
G185644 NA non-coding downstream 136086 19197752 ~ 19197969 (-)
G185619 rps6kc1 non-coding downstream 223872 19109509 ~ 19110183 (-)
G185565 NA non-coding downstream 356614 18928325 ~ 18977441 (-)
G185556 NA non-coding downstream 419584 18913813 ~ 18914471 (-)
G185721 NA non-coding upstream 13622 19367938 ~ 19368768 (-)
G185741 NA non-coding upstream 57404 19411720 ~ 19434102 (-)
G185771 NA non-coding upstream 218350 19572666 ~ 19574450 (-)
LOC120546771 NA non-coding upstream 227489 19581805 ~ 19584966 (-)
G185779 acp1 non-coding upstream 279182 19633498 ~ 19637655 (-)
LOC120546223 LOC102213764,LOC101481591 other downstream 426801 18904537 ~ 18907254 (-)
abcd4 abcd4 other downstream 543682 18778130 ~ 18790373 (-)
LOC120546357 LOC106525279 other downstream 686654 18640421 ~ 18647401 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other downstream 827857 18489815 ~ 18506198 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other downstream 1421019 17911270 ~ 17913036 (-)
LOC120546212 fam150b,LOC104941953,LOC100704438 other upstream 294211 19648527 ~ 19652927 (-)
ccdc167 ccdc167 other upstream 492642 19846958 ~ 19849804 (-)
G186006 NA other upstream 1208121 20562437 ~ 20567479 (-)
syne1a syne1,LOC102291171,LOC103355013,LOC102194633 other upstream 1658076 21012392 ~ 21154812 (-)
LOC120547346 NA other upstream 1818525 21172841 ~ 21173006 (-)

Expression


Co-expression Network