ccdc167 (ccdc167)


Basic Information

Item Value
gene id ccdc167
gene name ccdc167
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19846958 ~ 19849804 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU251713
AAAAACACTTCCGCTGCATAGTCACAGTTTTCAGCCAGGCTGTCAGAAGTAAGTTTGGGTTACAATATGGCTAAATTGAAAGACAAAAGACGAGAGAAAACAAGTGTCGCCAATGAGGCAGGACCTGGAAGATGAAATGACGATCATTAATCAGAGGGTGCTAAAGTTAGACAAGGAGCTGGAGATGTTAAGAAGAGAGAATCGGAAGAACATGCTGCTATCAGTCGCTCTGCTGGTCATCAGTGCTCTCTTCTACTATGTCTTTGTTTTCAATGAAGAAGACTCCTTGTCATGAATAGGCTGAAGAGCTGTGCTGATGAAATACTTCAGTTCTGCCTCTAGATGGCATCATTGTGTAGATCTCTTCTGGTCATCATAGTGGGTTTATCCTGCACAGTCAGAACCCCACCACAGCTTCTTGGACTAAAGTAACGCATACATGAGATAATAGTAAGGTGAAGTGAGCAatcatttttgtcttttcagcTTGTATACAGTCAGTTTTGATTTTCATTGCTGTATAAAGACCTTACTGTATATTATGACATTCAACATGAAGACAGGATTACAACACGGACAGTTTGTCCCCTAAATAACCAGTTCAATATTAAGTTTGCCTTATGCCACAAATAAACCAAAGTAATAATGCTTTTATACACTATATTGAAGAAATGCTTCATCAAATGGTGCCAATCAAGtcggctttttttctttttagtcacATAAATGTGTGATAATGCATGATACACGTTGCATGTGcattaaatgaatgaaattcTTTGATACGTTCTGTTTAAGTGTGAGTTGTACAGGATGTTTTGTCGTTACAGCAAATGGAGAACCTGaagaatatattttttgttttgatactCTTGGTGGCCATACACCCATCCCCTAAAAGCTGAAAGATGGcaaatgtcttattttgaaTACACGTATGAAAATGAGGGTATGACAATTAGGTTTGGTCCTTATAACTCa
>XM_039782592.1
ACCAATGAAAAAGAACTAGGAAGAAAAACACTTCCGCTGCATAGTCACAGTTTTCAGCCAGGCTGTCAGAAGTAAGTTTGGGTTACAATATGGCTAAATTGAAAGACAAAAGACGAGAGAAAACAAGTGTCGCCAATGAGATTGACCGTTTAGAGGAGCGGCGGGCGCGTTGTCAAGACAACCTGGAGAGGGCTGAGTTCAGGACCAGAAAAGAGCAGCTCTCTGACAAGGACAGGCAGGACCTGGAAGATGAAATGACGATCATTAATCAGAGGGTGCTAAAGTTAGACAAGGAGCTGGAGATGTTAAGAAGAGAGAATCGGAAGAACATGCTGCTATCAGTCGCTCTGCTGGTCATCAGTGCTCTCTTCTACTATGTCTTTGTTTTCAATGAAGAAGACTCCTTGTCATGAATAGGCTGAAGAGCTGTGCTGATGAAATACTTCAGTTCTGCCTCTAGATGGCATCATTGTGTAGATCTCTTCTGGTCATCATAGTGGGTTTATCCTGCACAGTCAGAACCCCACCACAGCTTCTTGGACTAAAGTAACGCATACATGAGATAATAGTAAGGTGAAGTGAGCAatcatttttgtcttttcagcTTGTATACAGTCAGTTTTGATTTTCATTGCTGTATAAAGACCTTACTGTATATTATGACATTCAACATGAAGACAGGATTACAACACGGACAGTTTGTCCCCTAAATAACCAGTTCAATATTAAGTTTGCCTTATGCCACAAATAAACCAAAGTAATAATGCTTTTATACACTATATTGAAGAAATGCTTCATCAAATGGTGCCAATCAAGtcggctttttttctttttagtcacATAAATGTGTGATAATGCATGATACACGTTGCATGTGcattaaatgaatgaaattcTTTGATACGTTCTGTTTAAGTGTGAGTTGTACAGGATGTTTTGTCGTTACAGCAAATGGAGAACCTGaagaatatattttttgttttgatactCTTGGTGGCCATACACCCATCCCCTAAAAGCTGAAAGATGGcaaatgtcttattttgaaTACACGTATGAAAATGAGGGTATGACAATTAGGTTTGGTCCTTATAACTCatctgtttttttacttttaataaataaaaataaacactgtcAATTTTAGAAGCATATTTATTGAAGTGTTGGTATTTCATAGGatcaatatatttattataagcTCAATTGTTATATGTATGTAATCTATTTTGAAAGTAGAGTTCATTACATGACTCATAGCTTTGATAGAGGCCCAAATTTGTTATAATTGGACATTACTGTGTTTGAGTAGATGTGTTCTGATCAGGAAGTTTATTGTTTGACAGTAAATACAGAGGAGGCATCCTTCACCCAGTGACACAGTTATGGTGGGAATAGTGTAGCAGTCTAAGGAGAAGATTGTAAAAAGCCTTAAGGCTTTCTCTCTATCCTGAGtggataaaaaacaaacatcactAATACTGATTCTTATTgcttcatttataataaaaactcTTAAAGACCCAA

Function

symbol description
ccdc167 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167).

NR:

description
coiled-coil domain-containing protein 167

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251713 False 981 lncRNA 0.38 3 19847386 19849781
XM_039782592.1 True 1527 mRNA 0.37 4 19846958 19849804

Neighbor

gene id symbol gene type direction distance location
ak9 NA coding downstream 100988 19732209 ~ 19745970 (-)
LOC120547106 NA coding downstream 148853 19693856 ~ 19698105 (-)
tmem18 tmem18 coding downstream 153927 19687468 ~ 19693031 (-)
fam110c NA coding downstream 226180 19616980 ~ 19620778 (-)
fbxo25 NA coding downstream 231802 19598338 ~ 19615156 (-)
wasf1 wasf1 coding upstream 13945 19863749 ~ 19918978 (-)
mettl24 mettl24 coding upstream 94288 19944092 ~ 19975622 (-)
usta ust coding upstream 163471 20013275 ~ 20065635 (-)
sash1a sash1,LOC102791441 coding upstream 218421 20068225 ~ 20240713 (-)
stxbp5a stxbp5,LOC103360418 coding upstream 526691 20376495 ~ 20485589 (-)
G185862 gpr6,LOC104945012,LOC102794251,LOC101062337,LOC101067178 non-coding downstream 9740 19836506 ~ 19837218 (-)
G185816 NA non-coding downstream 119635 19726689 ~ 19727323 (-)
G185779 acp1 non-coding downstream 209303 19633498 ~ 19637655 (-)
LOC120546771 NA non-coding downstream 261992 19581805 ~ 19584966 (-)
G185771 NA non-coding downstream 272508 19572666 ~ 19574450 (-)
G185891 cdc40 non-coding upstream 71452 19921256 ~ 19923457 (-)
G185901 NA non-coding upstream 132944 19982748 ~ 19983141 (-)
LOC120546243 NA non-coding upstream 398856 20248660 ~ 20373750 (-)
G186004 NA non-coding upstream 686302 20536106 ~ 20562333 (-)
G186018 NA non-coding upstream 778856 20628660 ~ 20628859 (-)
LOC120546212 fam150b,LOC104941953,LOC100704438 other downstream 194031 19648527 ~ 19652927 (-)
LOC120546238 efr3b,LOC101073163 other downstream 492642 19334055 ~ 19354316 (-)
LOC120546223 LOC102213764,LOC101481591 other downstream 939704 18904537 ~ 18907254 (-)
abcd4 abcd4 other downstream 1056585 18778130 ~ 18790373 (-)
LOC120546357 LOC106525279 other downstream 1199557 18640421 ~ 18647401 (-)
G186006 NA other upstream 712633 20562437 ~ 20567479 (-)
syne1a syne1,LOC102291171,LOC103355013,LOC102194633 other upstream 1162588 21012392 ~ 21154812 (-)
LOC120547346 NA other upstream 1323037 21172841 ~ 21173006 (-)
LOC120547366 NA other upstream 1325534 21175338 ~ 21175528 (-)
si:ch211-51e12.7 NA other upstream 1377162 21226966 ~ 21236529 (-)

Expression


Co-expression Network