gtf2h5 (gtf2h5)


Basic Information

Item Value
gene id gtf2h5
gene name gtf2h5
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21170948 ~ 21172639 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU252054
TACGtcacccatggatgtattaagagaacgtcaCCCCACCTCAATGCTTTGAAACTGTTTAGGAAACAGCCGCAGCAAGCTATCAATTTGGTGAAAGTTTTGAGCATTTCCATTTGATTGACTGCTGATTTCTCTGCACCTGTCAACATGGTCAACGTACACAAAGGTGTTCTTGTTGAATGTGATCCTGCCATGAAACAGTTCCTCCTCTACTTGGATGAAAAAATGGCCCTGGGAAAGAAGTTCATCCTCAAGGACCTTGACGACACACACCTCTTCATCCTGGCAGAGGTGGTTCAGACCCTCCAGGAGAGAGTTGGCGAGTTAATGGACCAGAACTCATTCACCGTCACGCAGAAATGATACTCAACTGTTTCAAAGAAGTCTTGCTTCTTGGACTTAGGGCAGTTTAAGAGTTTGTCTTTAGATGAACACGGTTTGCAATGTTTTGACAATATAAATCATCAGAAACATGGATCTAACTTACAGCCAAACAAAGTTGCAGCATAAAAAGACCGAGAACAAATATCGGAAACTTTTGCAAATGTTAAACATGCAACTGAGACATCCGAACTGAGTTCTCTGTGGGAGAatataatgtgtttgtttttttacggtCTGGCGACAAACTAGGCTACACAACAACCACTAAAGAGCTTCAGTAGCCTCTAGTGTAGAACAGAGCTGACCGCATGATTCAACCCTATACTGAACATTTGAGCCAGAACGGACTTTCCTAATGTTATCTCGTACTACACAATGCATTCACTCGCAGATTTTTTTCAGCAAATTGTCCACCTTCAGATTAGTTCAAGACATGGTTCatcagaaaaataaagtgaactGTCTGATTCTTCACTGACTTAGCTTACAGTTTACGTCCATGGCTGTCCTATTAACAACAGCCGTGGTGACTGTGATTTCACATTTACAGCAGTATGATTCACTGAATCTGAATTAACTTTAAATATGTCTGAGGGTtacagtgttttccctaggtttgtgaAATATTTAGGTGCATGTATTTGGTGGGGGGTTAaggggtcctccctcaagaaaatgttatgtttttcaataaagaaaatgcaatttca
>TU252055
TACGtcacccatggatgtattaagagaacgtcaCCCCACCTCAATGCTTTGAAACTGTTTAGGAAACAGCCGCAGCAAGCTATCAATTTGGTGAAAGTCCGTCTCTCGTCCTTCTTAACTCATTTTGAATGTACTAGGTTTTGAGCATTTCCATTTGATTGACTGCTGATTTCTCTGCACCTGTCAACATGGTCAACGTACACAAAGGTGTTCTTGTTGAATGTGATCCTGCCATGAAACAGTTCCTCCTCTACTTGGATGAAAAAATGGCCCTGGGAAAGAAGTTCATCCTCAAGGACCTTGACGACACACACCTCTTCATCCTGGCAGAGGTGGTTCAGACCCTCCAGGAGAGAGTTGGCGAGTTAATGGACCAGAACTCATTCACCGTCACGCAGAAATGATACTCAACTGTTTCAAAGAAGTCTTGCTTCTTGGACTTAGGGCAGTTTAAGAGTTTGTCTTTAGATGAACACGGTTTGCAATGTTTTGACAATATAAATCATCAGAAACATGGATCTAACTTACAGCCAAACAAAGTTGCAGCATAAAAAGACCGAGAACAAATATCGGAAACTTTTGCAAATGTTAAACATGCAACTGAGACATCCGAACTGAGTTCTCTGTGGGAGAatataatgtgtttgtttttttacggtCTGGCGACAAACTAGGCTACACAACAACCACTAAAGAGCTTCAGTAGCCTCTAGTGTAGAACAGAGCTGACCGCATGATTCAACCCTATACTGAACATTTGAGCCAGAACGGACTTTCCTAATGTTATCTCGTACTACACAATGCATTCACTCGCAGATTTTTTTCAGCAAATTGTCCACCTTCAGATTAGTTCAAGACATGGTTCatcagaaaaataaagtgaactGTCTGATTCTTCACTGACTTAGCTTACAGTTTACGTCCATGGCTGTCCTATTAACAACAGCCGTGGTGACTGTGATTTCACATTTACAGCAGTATGATTCACTGAATCTGAATTAACTTTAAATATGTCTGAGGGTtacagtgttttccctaggtttgtgaAATATTTAGGTGCATGTATTTGGTGGGGGGTTAaggggtcctccctcaagaaaatgttatgtttttcaataaagaaaatgcaatttca
>TU252056
TACGtcacccatggatgtattaagagaacgtcaCCCCACCTCAATGCTTTGAAACTGTTTAGGAAACAGCCGCAGCAAGCTATCAATTTGGTTTTGAGCATTTCCATTTGATTGACTGCTGATTTCTCTGCACCTGTCAACATGGTCAACGTACACAAAGGTGTTCTTGTTGAATGTGATCCTGCCATGAAACAGTTCCTCCTCTACTTGGATGAAAAAATGGCCCTGGGAAAGAAGTTCATCCTCAAGGACCTTGACGACACACACCTCTTCATCCTGGCAGAGGTGGTTCAGACCCTCCAGGAGAGAGTTGGCGAGTTAATGGACCAGAACTCATTCACCGTCACGCAGAAATGATACTCAACTGTTTCAAAGAAGTCTTGCTTCTTGGACTTAGGGCAGTTTAAGAGTTTGTCTTTAGATGAACACGGTTTGCAATGTTTTGACAATATAAATCATCAGAAACATGGATCTAACTTACAGCCAAACAAAGTTGCAGCATAAAAAGACCGAGAACAAATATCGGAAACTTTTGCAAATGTTAAACATGCAACTGAGACATCCGAACTGAGTTCTCTGTGGGAGAatataatgtgtttgtttttttacggtCTGGCGACAAACTAGGCTACACAACAACCACTAAAGAGCTTCAGTAGCCTCTAGTGTAGAACAGAGCTGACCGCATGATTCAACCCTATACTGAACATTTGAGCCAGAACGGACTTTCCTAATGTTATCTCGTACTACACAATGCATTCACTCGCAGATTTTTTTCAGCAAATTGTCCACCTTCAGATTAGTTCAAGACATGGTTCatcagaaaaataaagtgaactGTCTGATTCTTCACTGACTTAGCTTACAGTTTACGTCCATGGCTGTCCTATTAACAACAGCCGTGGTGACTGTGATTTCACATTTACAGCAGTATGATTCACTGAATCTGAATTAACTTTAAATATGTCTGAGGGTtacagtgttttccctaggtttgtgaAATATTTAGGTGCATGTATTTGGTGGGGGGTTAaggggtcctccctcaagaaaatgttatgtttttcaataaagaaaatgcaatttca
>TU252057
TACGtcacccatggatgtattaagagaacgtcaCCCCACCTCAATGCTTTGAAACTGTTTAGGAAACAGCCGCAGCAAGCTATCAATTTGGTGAAAGTCCGTCTCTCGTCCTTCTTAACTCATTTTGAATGTACTAGGTATCTAAAACTTGAATGGTTTTGAGCATTTCCATTTGATTGACTGCTGATTTCTCTGCACCTGTCAACATGGTCAACGTACACAAAGGTGTTCTTGTTGAATGTGATCCTGCCATGAAACAGTTCCTCCTCTACTTGGATGAAAAAATGGCCCTGGGAAAGAAGTTCATCCTCAAGGACCTTGACGACACACACCTCTTCATCCTGGCAGAGGTGGTTCAGACCCTCCAGGAGAGAGTTGGCGAGTTAATGGACCAGAACTCATTCACCGTCACGCAGAAATGATACTCAACTGTTTCAAAGAAGTCTTGCTTCTTGGACTTAGGGCAGTTTAAGAGTTTGTCTTTAGATGAACACGGTTTGCAATGTTTTGACAATATAAATCATCAGAAACATGGATCTAACTTACAGCCAAACAAAGTTGCAGCATAAAAAGACCGAGAACAAATATCGGAAACTTTTGCAAATGTTAAACATGCAACTGAGACATCCGAACTGAGTTCTCTGTGGGAGAatataatgtgtttgtttttttacggtCTGGCGACAAACTAGGCTACACAACAACCACTAAAGAGCTTCAGTAGCCTCTAGTGTAGAACAGAGCTGACCGCATGATTCAACCCTATACTGAACATTTGAGCCAGAACGGACTTTCCTAATGTTATCTCGTACTACACAATGCATTCACTCGCAGATTTTTTTCAGCAAATTGTCCACCTTCAGATTAGTTCAAGACATGGTTCatcagaaaaataaagtgaactGTCTGATTCTTCACTGACTTAGCTTACAGTTTACGTCCATGGCTGTCCTATTAACAACAGCCGTGGTGACTGTGATTTCACATTTACAGCAGTATGATTCACTGAATCTGAATTAACTTTAAATATGTCTGAGGGTtacagtgttttccctaggtttgtgaAATATTTAGGTGCATGTATTTGGTGGGGGGTTAaggggtcctccctcaagaaaatgttatgtttttcaataaagaaaatgcaatttca
>XM_039782888.1
cacccatggatgtattaagagaacgtcaCCCCACCTCAATGCTTTGAAACTGTTTAGGAAACAGCCGCAGCAAGCTATCAATTTGGTGAAAGTCCGTCTCTCGTCCTTCTTAACTCATTTTGAATGTACTAGGTTTTGAGCATTTCCATTTGATTGACTGCTGATTTCTCTGCACCTGTCAACATGGTCAACGTACACAAAGGTGTTCTTGTTGAATGTGATCCTGCCATGAAACAGTTCCTCCTCTACTTGGATGAAAAAATGGCCCTGGGAAAGAAGTTCATCCTCAAGGACCTTGACGACACACACCTCTTCATCCTGGCAGAGGTGGTTCAGACCCTCCAGGAGAGAGTTGGCGAGTTAATGGACCAGAACTCATTCACCGTCACGCAGAAATGATACTCAACTGTTTCAAAGAAGTCTTGCTTCTTGGACTTAGGGCAGTTTAAGAGTTTGTCTTTAGATGAACACGGTTTGCAATGTTTTGACAATATAAATCATCAGAAACATGGATCTAACTTACAGCCAAACAAAGTTGCAGCATAAAAAGACCGAGAACAAATATCGGAAACTTTTGCAAATGTTAAACATGCAACTGAGACATCCGAACTGAGTTCTCTGTGGGAGAatataatgtgtttgtttttttacggtCTGGCGACAAACTAGGCTACACAACAACCACTAAAGAGCTTCAGTAGCCTCTAGTGTAGAACAGAGCTGACCGCATGATTCAACCCTATACTGAACATTTGAGCCAGAACGGACTTTCCTAATGTTATCTCGTACTACACAATGCATTCACTCGCAGATTTTTTTCAGCAAATTGTCCACCTTCAGATTAGTTCAAGACATGGTTCatcagaaaaataaagtgaactGTCTGATTCTTCACTGACTTAGCTTACAGTTTACGTCCATGGCTGTCCTATTAACAACAGCCGTGGTGACTGTGATTTCACATTTACAGCAGTATGATTCACTGAATCTGAATTAACTTTAAATATGTCTGAGGGTtacagtgttttccctaggtttgtgaAATATTTAGGTGCATGTATTTGGTGGGGGGTTAaggggtcctccctcaagaaaatgttatgtttttcaataaagaaaatgcaatttca
>XM_039782889.1
TGGATTGCAGAAGATTGTCCCTCGGTGCAGACCGTACGtcacccatggatgtattaagagaacgtcaCCCCACCTCAATGCTTTGAAACTGTTTAGGAAACAGCCGCAGCAAGCTATCAATTTGGTGAAAGTTTTGAGCATTTCCATTTGATTGACTGCTGATTTCTCTGCACCTGTCAACATGGTCAACGTACACAAAGGTGTTCTTGTTGAATGTGATCCTGCCATGAAACAGTTCCTCCTCTACTTGGATGAAAAAATGGCCCTGGGAAAGAAGTTCATCCTCAAGGACCTTGACGACACACACCTCTTCATCCTGGCAGAGGTGGTTCAGACCCTCCAGGAGAGAGTTGGCGAGTTAATGGACCAGAACTCATTCACCGTCACGCAGAAATGATACTCAACTGTTTCAAAGAAGTCTTGCTTCTTGGACTTAGGGCAGTTTAAGAGTTTGTCTTTAGATGAACACGGTTTGCAATGTTTTGACAATATAAATCATCAGAAACATGGATCTAACTTACAGCCAAACAAAGTTGCAGCATAAAAAGACCGAGAACAAATATCGGAAACTTTTGCAAATGTTAAACATGCAACTGAGACATCCGAACTGAGTTCTCTGTGGGAGAatataatgtgtttgtttttttacggtCTGGCGACAAACTAGGCTACACAACAACCACTAAAGAGCTTCAGTAGCCTCTAGTGTAGAACAGAGCTGACCGCATGATTCAACCCTATACTGAACATTTGAGCCAGAACGGACTTTCCTAATGTTATCTCGTACTACACAATGCATTCACTCGCAGATTTTTTTCAGCAAATTGTCCACCTTCAGATTAGTTCAAGACATGGTTCatcagaaaaataaagtgaactGTCTGATTCTTCACTGACTTAGCTTACAGTTTACGTCCATGGCTGTCCTATTAACAACAGCCGTGGTGACTGTGATTTCACATTTACAGCAGTATGATTCACTGAATCTGAATTAACTTTAAATATGTCTGAGGGTtacagtgttttccctaggtttgtgaAATATTTAGGTGCATGTATTTGGTGGGGGGTTAaggggtcctccctcaagaaaatgttatgtttttcaataaagaaaatgcaatttca
>XM_039782891.1
tattaagagaacgtcaCCCCACCTCAATGCTTTGAAACTGTTTAGGAAACAGCCGCAGCAAGCTATCAATTTGGTGAAAGTCCGTCTCTCGTCCTTCTTAACTCATTTTGAATGTACTAGGTATCTAAAACTTGAATGGTTTTGAGCATTTCCATTTGATTGACTGCTGATTTCTCTGCACCTGTCAACATGGTCAACGTACACAAAGGTGTTCTTGTTGAATGTGATCCTGCCATGAAACAGTTCCTCCTCTACTTGGATGAAAAAATGGCCCTGGGAAAGAAGTTCATCCTCAAGGACCTTGACGACACACACCTCTTCATCCTGGCAGAGGTGGTTCAGACCCTCCAGGAGAGAGTTGGCGAGTTAATGGACCAGAACTCATTCACCGTCACGCAGAAATGATACTCAACTGTTTCAAAGAAGTCTTGCTTCTTGGACTTAGGGCAGTTTAAGAGTTTGTCTTTAGATGAACACGGTTTGCAATGTTTTGACAATATAAATCATCAGAAACATGGATCTAACTTACAGCCAAACAAAGTTGCAGCATAAAAAGACCGAGAACAAATATCGGAAACTTTTGCAAATGTTAAACATGCAACTGAGACATCCGAACTGAGTTCTCTGTGGGAGAatataatgtgtttgtttttttacggtCTGGCGACAAACTAGGCTACACAACAACCACTAAAGAGCTTCAGTAGCCTCTAGTGTAGAACAGAGCTGACCGCATGATTCAACCCTATACTGAACATTTGAGCCAGAACGGACTTTCCTAATGTTATCTCGTACTACACAATGCATTCACTCGCAGATTTTTTTCAGCAAATTGTCCACCTTCAGATTAGTTCAAGACATGGTTCatcagaaaaataaagtgaactGTCTGATTCTTCACTGACTTAGCTTACAGTTTACGTCCATGGCTGTCCTATTAACAACAGCCGTGGTGACTGTGATTTCACATTTACAGCAGTATGATTCACTGAATCTGAATTAACTTTAAATATGTCTGAGGGTtacagtgttttccctaggtttgtgaAATATTTAGGTGCATGTATTTGGTGGGGGGTTAaggggtcctccctcaagaaaatgttatgtttttcaataaagaaaatgcaatttca
>XM_039782892.1
AGAAGATTGTCCCTCGGTGCAGACCGTACGtcacccatggatgtattaagagaacgtcaCCCCACCTCAATGCTTTGAAACTGTTTAGGAAACAGCCGCAGCAAGCTATCAATTTGGTTTTGAGCATTTCCATTTGATTGACTGCTGATTTCTCTGCACCTGTCAACATGGTCAACGTACACAAAGGTGTTCTTGTTGAATGTGATCCTGCCATGAAACAGTTCCTCCTCTACTTGGATGAAAAAATGGCCCTGGGAAAGAAGTTCATCCTCAAGGACCTTGACGACACACACCTCTTCATCCTGGCAGAGGTGGTTCAGACCCTCCAGGAGAGAGTTGGCGAGTTAATGGACCAGAACTCATTCACCGTCACGCAGAAATGATACTCAACTGTTTCAAAGAAGTCTTGCTTCTTGGACTTAGGGCAGTTTAAGAGTTTGTCTTTAGATGAACACGGTTTGCAATGTTTTGACAATATAAATCATCAGAAACATGGATCTAACTTACAGCCAAACAAAGTTGCAGCATAAAAAGACCGAGAACAAATATCGGAAACTTTTGCAAATGTTAAACATGCAACTGAGACATCCGAACTGAGTTCTCTGTGGGAGAatataatgtgtttgtttttttacggtCTGGCGACAAACTAGGCTACACAACAACCACTAAAGAGCTTCAGTAGCCTCTAGTGTAGAACAGAGCTGACCGCATGATTCAACCCTATACTGAACATTTGAGCCAGAACGGACTTTCCTAATGTTATCTCGTACTACACAATGCATTCACTCGCAGATTTTTTTCAGCAAATTGTCCACCTTCAGATTAGTTCAAGACATGGTTCatcagaaaaataaagtgaactGTCTGATTCTTCACTGACTTAGCTTACAGTTTACGTCCATGGCTGTCCTATTAACAACAGCCGTGGTGACTGTGATTTCACATTTACAGCAGTATGATTCACTGAATCTGAATTAACTTTAAATATGTCTGAGGGTtacagtgttttccctaggtttgtgaAATATTTAGGTGCATGTATTTGGTGGGGGGTTAaggggtcctccctcaagaaaatgttatgtttttcaataaagaaaatgcaatttca

Function

symbol description
gtf2h5 Predicted to be involved in nucleotide-excision repair, preincision complex assembly; phosphorylation of RNA polymerase II C-terminal domain; and transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair and transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex; transcription factor TFIIH core complex; and transcription factor TFIIH holo complex. Human ortholog(s) of this gene implicated in photosensitive trichothiodystrophy 3. Orthologous to human GTF2H5 (general transcription factor IIH subunit 5).

NR:

description
general transcription factor IIH subunit 5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252054 False 1094 lncRNA 0.41 3 21170982 21172639
TU252055 False 1135 lncRNA 0.41 3 21170982 21172639
TU252056 False 1088 lncRNA 0.41 3 21170982 21172639
TU252057 True 1153 lncRNA 0.41 3 21170982 21172639
XM_039782888.1 False 1130 mRNA 0.41 3 21170987 21172639
XM_039782889.1 False 1128 mRNA 0.41 3 21170948 21172639
XM_039782891.1 False 1136 mRNA 0.40 3 21170999 21172639
XM_039782892.1 False 1114 mRNA 0.41 3 21170956 21172639

Neighbor

gene id symbol gene type direction distance location
serac1 serac1,LOC102777075 coding upstream 587 21163218 ~ 21170361 (+)
myct1a myct1,LOC103355010 coding upstream 8062 21159956 ~ 21162886 (+)
esr1 esr1 coding upstream 158712 20999574 ~ 21012236 (+)
armt1 armt1 coding upstream 174323 20992466 ~ 20996625 (+)
akap12b akap12,LOC102289546,LOC102211499,LOC102799877 coding upstream 190785 20937518 ~ 20980163 (+)
dynlt1b dynlt1 coding downstream 4837 21177476 ~ 21178916 (+)
mrps10 mrps10 coding downstream 51912 21224551 ~ 21226805 (+)
ppil6 ppil6 coding downstream 75024 21247663 ~ 21251189 (+)
cd164 NA coding downstream 79341 21251980 ~ 21266573 (+)
sesn1 sesn1,LOC102782344 coding downstream 102218 21274857 ~ 21323086 (+)
LOC120546175 NA non-coding upstream 17764 21151444 ~ 21153184 (+)
G186106 NA non-coding upstream 108972 21060757 ~ 21061976 (+)
G186094 syne1,LOC103355013,LOC106946714 non-coding upstream 137766 21032641 ~ 21033182 (+)
G186088 LOC103355013 non-coding upstream 147070 21019821 ~ 21023878 (+)
LOC120546176 NA non-coding upstream 179530 20989305 ~ 20991418 (+)
G186210 NA non-coding downstream 175305 21347944 ~ 21348581 (+)
G186220 NA non-coding downstream 301913 21474552 ~ 21475304 (+)
G186297 NA non-coding downstream 367949 21540588 ~ 21542781 (+)
LOC120546760 NA non-coding downstream 572942 21745581 ~ 21746554 (+)
LOC120547080 NA non-coding downstream 660309 21832948 ~ 21833782 (+)
kif25 LOC104961976,LOC100703631 other upstream 1310731 19852643 ~ 19860217 (+)
acp1 acp1 other upstream 1522792 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 1550165 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 1629116 19429595 ~ 19541832 (+)
acbd3 acbd3,LOC102799892 other upstream 1743459 19354616 ~ 19427489 (+)
erh erh,LOC100699790,LOC101174968 other downstream 772104 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 813140 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 1108328 22280967 ~ 22301585 (+)
kcns3b kcns3,LOC103372653 other downstream 1635240 22807879 ~ 22810520 (+)
si:ch211-22i13.2 NA other downstream 1789394 22962033 ~ 22966010 (+)

Expression


Co-expression Network