G186905 (gphn,LOC106608213)


Basic Information

Item Value
gene id G186905
gene name gphn,LOC106608213
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23666937 ~ 23668127 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU253196
AACCACCCATTCCATCCCTCGCTATATGACGCCGACGCTCCGTCCCTCTGTGATGACATCATAGCCGACCGATGACCATGACGTCAACCACCTCGCCTTTGTGCAGCTCCACGTATTGCTCTGTTTTCGGAGGTAGCATCAGAAGCCCGTTAGCACTGCGCATGCTCATCAGCCTGCTGCTCACCTGGTTCcCTGTGCTCTGTGCCCACGGCAGAGGCTCCTGGTGATGCCATGTCAGAATGCAGCGGTGGTATTCAGGGCGAGGGTCCAACTTCACATCACAAGACAACtagagaaaaaaacatacagCGGAAATTATAATGACGTAAGTCAACAAGTCCTCTTCATCACCCTGGGTATTTGTCTGTAATTCAGATAAATTTCATATAGTGTAGATACATAATaaaagggtgtgacgagatctcgttttacgagatctcgcgagatctcgagtgacgagatttctcgtcgaggtgaaaagagtgaaagagtgacagacaagacgaacacaatatgtaaa

Function

symbol description
gphn Enables identical protein binding activity; molybdopterin cofactor binding activity; and nitrate reductase activity. Involved in gamma-aminobutyric acid receptor clustering; molybdopterin cofactor biosynthetic process; and response to metal ion. Located in dendrite and postsynaptic membrane. Implicated in inherited metabolic disorder and molybdenum cofactor deficiency type C.

NR:

description
PREDICTED: gephyrin isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253196 True 520 lncRNA 0.48 2 23666937 23668127

Neighbor

gene id symbol gene type direction distance location
atp6v1d atp6v1d coding upstream 22293 23640875 ~ 23644644 (+)
rbm25b rbm25,LOC108233444,LOC103353665,LOC102789801 coding upstream 42799 23611009 ~ 23624138 (+)
slc35b2 slc35b2 coding upstream 69538 23589968 ~ 23597399 (+)
rnf8 NA coding upstream 112671 23548578 ~ 23554266 (+)
mia3 mia3 coding upstream 127093 23522887 ~ 23539844 (+)
tmem121ab tmem121,LOC101465360,LOC102792477,LOC107377718 coding downstream 361926 24030053 ~ 24068592 (+)
nt5c1bb LOC104946496,LOC101163217,LOC103359106 coding downstream 539199 24207326 ~ 24215960 (+)
si:dkey-174m14.3 LOC102302461,LOC103359114,LOC101468873,LOC102795766,LOC102194912 coding downstream 556930 24225057 ~ 24252680 (+)
LOC120546721 NA coding downstream 591421 24259548 ~ 24278489 (+)
rngtt rngtt coding downstream 611293 24279420 ~ 24376144 (+)
G186902 mpp5 non-coding upstream 8507 23650396 ~ 23658430 (+)
G186901 mpp5 non-coding upstream 17369 23647579 ~ 23649568 (+)
G186882 hsp90ab1 non-coding upstream 59402 23602636 ~ 23607535 (+)
LOC120546283 NA non-coding upstream 160373 23475699 ~ 23506564 (+)
G186841 NA non-coding upstream 227417 23438240 ~ 23439520 (+)
G186954 NA non-coding downstream 161398 23829525 ~ 23861934 (+)
G186961 NA non-coding downstream 200153 23868280 ~ 23925648 (+)
G186972 NA non-coding downstream 404636 24072763 ~ 24147218 (+)
G187027 NA non-coding downstream 543286 24211413 ~ 24234751 (+)
G187074 NA non-coding downstream 718829 24386956 ~ 24387168 (+)
nfkbie nfkbie other upstream 77248 23578378 ~ 23589689 (+)
tcte1 NA other upstream 102508 23559498 ~ 23564429 (+)
rsph3 rsph3 other upstream 469941 23192638 ~ 23196996 (+)
ppp2r5a ppp2r5a other upstream 524297 23095912 ~ 23142640 (+)
dtl dtl other upstream 571432 23087820 ~ 23095505 (+)
G186975 NA other downstream 411476 24079603 ~ 24083104 (+)
LOC120547070 NA other downstream 476870 24144997 ~ 24146762 (+)
extl3 extl3 other downstream 487360 24155487 ~ 24187864 (+)
G187094 bpnt1,LOC102799416 other downstream 838786 24506913 ~ 24507813 (+)
lama2 lama2,LOC104942190 other downstream 1141952 24810079 ~ 25009457 (+)

Expression


Co-expression Network