ttll2 (ttll2)


Basic Information

Item Value
gene id ttll2
gene name ttll2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 28872686 ~ 28883121 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU254729
agaaaattgaaattggtgccttctaggccgagatcagccagaaaatgtgtttttggctcaaatggatgaaagacaccaaatcccagaatgcacttgctttgctgctgtatgaggccactcccaagccataCCCCCCTTAACGAACAACACTGggagacgatcaactcaacaagtgtgttttattgtcatttcaaccatatacacaaaaaaacgtttcaccgtggctcaagtggtgttacacatttaaaacatgctctttttttttggccacagctgatacattatccggacttctttcagcggattgattgatagctccagagtgaacagaactgtgtccatggcaacgctctgctatgcatggcaacggtgtgttatcaagaaataacagaccgcattctaccaATTCATCCAAGCcaagaattcaaccaagccatgtaataaaagaaggctaacacatagctactagcattagctcttggtgggctgtggtataaacattgagtataaacacagccgtacatttgcgtgggatgtagctagaattgttggcattttacagtcacaaactccaccagcagttagttggatacaaatcaccccatttctgcaacaggcagtccggggtaacacagcccacctccactagtagtcttacccggtgaccgagcagcaggctggatcgtccacagcaatatttccacaacaacaaaaacacagcacagcagtctctgaactcacgttgggagtttcgttgaagttggatgtagtccagtttgtttaatgagcggacacttgcaagcaggattggtgaacagatAGCTGGCTAGCGtcagctttccaccggcacactcgttcaatgctccccgctgatgaggtcactttaccggccacaggaatcgagcaccaccgctggtctccgtgcaggcagaacttgcgtagtgtgtggagtattgcgtctgtaataaagtgtcctgcatattctccgatgtgttccaatgtatcccggtggtacacgtgtgcggtagtttgaatgcacataattgttgttctaaaatttccgtcgggatgaacagtttctgctcctgctgagaagctaagcgaggattcaagatggcggacactcgttttttcctcggcaatctccggaaaaagcagacagtccaaccccctatgggctatgcggaagtggctcctaatacagaatacaggctgtagtcttttgcctctgggcaaaaaaacctcagatgacgcaaaaatcgtcattttgagTCATCGGAGGCTTTTTTctagacccacaatacagagatctcccctctcagggggacatgagggagggaagcacggtcattcagaaatactaccaggtttctactgatacaaagcttaatgctaatcggtgaagtttcccttttaAGTATATCAAATTAAACGTCTCTAACACCCAATGATAGAAATGTTCTGCTCTGAACAGAAGCTGAGCAAAAGTGGCAGGTCTGGACCAAATTTTAAAAGATGTCCATTTCATTTACTGGTATACCTAAACTGTgatagaaaaaaataacttctaatttcttttttcttttttttttaactcgtTACAGGTCTCAacaattgtttgtttatttattttaattttaatatcaAAATGCCTCCTAGATGAGAGCCCTGAACGGCAAGGGGACGGGGACATTCTGGTGATTTAAGTCTGAGCTATTTGATTTGACTTAAAGGTGCTTTGTTTTTTAGGCTCATTTACACATGTTCCAGCGCTGATTtaaaacactttgaaaaaaagccatGACGGTAATATTACATAACTTGCAAAAGTACCCTGGGTTTAGAGTGCATGGAGAAATTAAAACTCCCCTGGAAGTAAACATGAGTTTAGTTGTATTAAGAGCATTGGACAATGGTGCACTTCAGCCTCTTGTGGCTGAAATCAgtattacaacaacaaacactAAGAATGGTCTGTGGGGGGGCTTAGAAAAATAATCCTggcaaaaactttttttcaccTGTTAAAAGTCAAAGAATTTAGATCAGGTTTAGAAAATGGATccatgaatgtttttttcctcttgccTCTCAGGGCTTCCATACTTTAAAAcagttttgactttttgaactTGGGAGTGGTTGCATACAGTCGGGCTGATTAGTATAGCAGCCGCTAAATGCATTTTAACCCAAGCAGGTAATCTCCAAAGCTAAAATACACTGACTTTTtgttgtgcctttttttttttttcttatactcATTGAAATCACATTCACACTCTTATTACTTTGACTGGACTGTAGAACATTCCTCAGGATTAAATAACCACCATAGTTTATCTCTAACAGCAGACATACAATACAGAGCTAATGGCAGGCACTCATTCATATAACAACCATTGTTCTGTACAAAAAGCGGCAGCACATACCTGGCTGACAGTAGCAGCAGTGGGTCGGTTTGTTTTGTCTGTAGGAGGAGCCACAGACTGTCTACTGTACACTGTGAAATGGTCTCTCCCACTCTACCTTTCATTTACCTGGCAGAAAGGACATAAGACTATTAGCTAATGCTATCAGCATTGTGAATTCCTAAGGTAAGACAACTCACATTTTTCAGCATTGTAAATTCTTAATTTGAGTTTTGACATTTAAG
>XM_039781357.1
GCAGTGGGTCGGTTTGTTTTGTCTGTAGGAGGAGCCACAGACTGTCTACTGTACACTGTGAAATGGTCTCTCCCACTCTACCTTTCATTTACCTGGCAGAAAGGACATAAGACTATTAGCTAATGCTATCAGCATTGTGAATTCCTAAGTTTACGATGCTGCATGGCTGCATCACTGGTGTTCAGACTGCATGACAGAGGTCCAGAGGTGGTGAGGGAGGTGCTTCTGGAGCGAGGATGGGAGGAATACGACCAAGAAAAACGCAAGGAGGAAGACTGGAACCTCTACTGGCGGGGCTCTGCATTTCGCAACTCCGAATATCACAACCTGTTGCCATGGCAGCGGCTCAACCACCATCCCAAAACTGTTGGCATCACACGCAAGGACTGCTTGGCACGTAACCTGAGGAGAATGAGAGCCACGTTTGGTTCAGCTCTCTACGACTTCAGTCCCACCGCCTTCATCCTCCCCAACGACTACACCCGCTTCCTGTCTGAATACAACAAACTGCGTCTGTCCAGAGGGCCGTCGGCCTACTGGATATGTAAGCCGGTGGATCTCTCCAGAGGCAGAGGGATCTTCATCTTTGAGGACATTAAGGACTTGGTCTACGACTGCTCTGTGATCGTACAGAGGTACATCAGTAACCCTCTGCTGATCTCCGGCTACAAGTTAGACCTGAGGATCTACGCGTGTGTGAAGAGCTTTCATCCACTGACTGTTTACGTTCATCAAGAAGGCCTGGTGCGTTTCGCCACTGAGAAATACAACCTGTCATCGCTGCATAACCTGTACGCTCATCTCACCAACACCAGCATCAATAAGTTTGGTCCCTTCTACAAAACCGAAAAGGAGAGAGTAGGCCAAGGATGCAAGTGGACCATGAGCAAGTTCAGGCATTTTCTCCACAGCCAAGACATCGACGAGCTTCTTCTGTGGCAGAGGATCAACCGCATCGTCACTCTGACCCTGCTCACCATCGCTCCCTCCGTCCCCTCCTGTCCAAACTGTGTGGAGCTGTTTGGCTTCGACATCCTGATTGACGTCAAGTTCAAACCTTGGCTCCTGGAGGTTAACTACAGCCCTGCGTTGACTCTGGACTGCCAAGCAGATATTACGGTGAAGAAAGGGCTAATCGGCGATCTGATTGATTTGATGAACTATACGCTGATTGACAGCTTGAGAGAGAAGGCCTATCAGAGACGAGGGTACACACAGCCTTGTTTCCATGCCAACCACCCCTCCAGAAGTCCCTTTCAGAAGCGAAGGACTGGTAGCCCGTCCCCACAGACCCTCCCTTTGATAAAAACGCTTGAAAAGATGAACCAAAGGCAGTCCAGACAACATGCGTTTGTAGCCGACTACCAAAGGCACCTTCCCCCTGTCGACATAGACAAGACACATGCATCCAGGGGCAGAATAGTCGACACCACAGCCAACAAAACCCGCACAGACAGGAAGACCCTAAACCTGATACTCAGCCCACATTCAAGGACAAAAGTGTCAGTGGTAAACAGACAGACGTGTCCAGCTCTTGCACCGTGGCTGGCGGACAACAGTCCTCGCGTGTCTGAGGTTACAGACCATGACGCCACTGAAATAGAAGCTGAGATGGAGCTCGCAAGAGAGACAGACGTTTCCTCTTCGATACGTGATATCCCACACAGGGGGCTGGGATTCAGACGGTCAAAGCTTCCGAACATTTACAGTGGGAGTCACCGACCGGTAAAGATGGAGAGAACAAAAGCTCTAAACAGACAACATATTCCTCCGCTCAGAGTTGGAGACTTTATACGGACATTCCCATTTAATACAGCCACTCTGAGGGCCTCGCAGCATCAACTGGATGTCAAGATAGTCATACAGGAGCTTCACAGGGTCACTGCTCAGTTGGCTACATCAGGCAGCAAGTTGAGGATAGAAGAGGAGAAGGTGAAGAAAGATGGTGAAGAAGACTTTGATTCATTGTTGTGGGGGCCAAAGGAACCTCCATTACTCAGTCAATTCTTCAAATCCACTTAG

Function

symbol description
ttll2 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL2 (tubulin tyrosine ligase like 2).

NR:

description
probable tubulin polyglutamylase TTLL2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254729 True 2656 lncRNA 0.42 1 28872686 28875341
XM_039781357.1 False 2022 mRNA 0.50 4 28875134 28883121

Neighbor

gene id symbol gene type direction distance location
LOC120547119 NA coding upstream 83 28866213 ~ 28872603 (+)
plg plg coding upstream 85868 28773325 ~ 28786818 (+)
vgll2a vgll2,LOC102778318 coding upstream 124494 28741168 ~ 28748192 (+)
rfx6 rfx6,LOC102778618,LOC102305591,LOC102193265 coding upstream 183095 28669262 ~ 28689591 (+)
ncoa1 ncoa1 coding upstream 405813 28393107 ~ 28466873 (+)
gpr31 NA coding downstream 19255 28902376 ~ 28906380 (+)
LOC120547117 gpr31,LOC104934219,LOC104957175 coding downstream 34170 28917291 ~ 28924763 (+)
slc30a2 slc30a3,LOC102796772 coding downstream 313048 29196169 ~ 29220727 (+)
LOC120546480 NA coding downstream 432638 29315759 ~ 29371150 (+)
LOC120546866 LOC103363081,LOC108247050,LOC101159876,LOC107104461 coding downstream 978253 29861374 ~ 29875824 (+)
trnal-cag_2 NA non-coding upstream 220002 28652602 ~ 28652684 (+)
G187918 NA non-coding upstream 327171 28472115 ~ 28545515 (+)
LOC120546306 NA non-coding upstream 368295 28500729 ~ 28504391 (+)
G187915 NA non-coding upstream 452424 28419992 ~ 28420262 (+)
G187906 NA non-coding upstream 495046 28365238 ~ 28377640 (+)
G188069 NA non-coding downstream 31281 28914402 ~ 28914798 (+)
G188091 NA non-coding downstream 47937 28931058 ~ 28944726 (+)
G188097 NA non-coding downstream 90478 28973599 ~ 28973911 (+)
G188100 NA non-coding downstream 93849 28976970 ~ 28977625 (+)
G188101 NA non-coding downstream 95834 28978955 ~ 28981624 (+)
afdna afdn,LOC102779179 other upstream 223563 28539400 ~ 28649123 (+)
LOC120546215 LOC104930085 other upstream 1834458 27028105 ~ 27038228 (+)
LOC120546586 dtnb other upstream 2134883 26695430 ~ 26737803 (+)
G187574 NA other upstream 2187179 26682895 ~ 26685507 (+)
tfap2b tfap2b other upstream 2420321 26438486 ~ 26452365 (+)
G188063 NA other downstream 3369 28886490 ~ 28891364 (+)
trim54 trim54,LOC103375614 other downstream 227837 29110958 ~ 29132700 (+)
G188167 ucn other downstream 251050 29134171 ~ 29136917 (+)
si:ch211-245h14.1 NA other downstream 409584 29292705 ~ 29312364 (+)
G188207 clvs2,LOC107675107 other downstream 536255 29419376 ~ 29420727 (+)

Expression


Co-expression Network