trim54 (trim54,LOC103375614)


Basic Information

Item Value
gene id trim54
gene name trim54,LOC103375614
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29110958 ~ 29132700 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU254851
tgttttgtttgacttttttattgGTTAAACATTTGAGTACAATGATTTGATATTCTCTGAGAGACATAACAGAAGGGGATACAAGGTGTTTGTTTCTGTCTTGAATCTCCCGGTTAACCTGTATTGATGAATTGATCAGGGTTTTGCATGGCCAGGGCTTTGTGGTTTGTTTTTTGGTTTAGAAAGTGTCAGACTTCACACATTAGTTATTCAGCTTCCAGTCATCAGCTAGAGCGGGCAAACCTGTAGCCCTGTCTCTCTTTTTGccaaatgttttaatgttttatacaCATAACGGACACACATTGGACTACAGAGTCTAATTCATAATATTTAGTTTTGAGGGACTAATAatggtttttatttgttaatttaGTCCTGAATTATAGATCTTTCACTGTTTTGGTGGGAAAATCTACAATTTTGACCAAAAAAGCCATACAATCTCAAAGTCCACTTAATAACCTTTCCTGGAGATTTCTTTTGCATCCCACATTCTTCATCAGCAGGTAGAGCTggctcagttgtcatggaggCCATTCACATCATGCACCAAAGACCACCTCTGAACAGAGACAGAAGTTTTACAActaaataaaatcaaacatttcCTCAGTTTGCTGTAGAAGATTATCCAGGAAACCTGAAAACTTATTTAAAGGGCcctttgataataataataatatattgatttaattcaattcaggtGCCTgcgaatttcaaaataaaggcgcaTCTTAAAGATATGTATCATCGATTTTCACTTTGCATCGATGATATTGGATCGTTGATCACTGAAGCGATATATCGATCCAGATCGATGTATCGTTACAGCCCTAATAAATACATGGCACCCTAAAGGTTCACTTCATGTCTTGATCATAAAATGCCTCATATTTAAAGTGTTTCAATGAGAATCCTGCAGACAAACAAGTTtctaaaaatgcaaaaacaaaactgaCAGCTCTTAAACTGAAGTTGTTCAAATGTGTCAGAGCCTGTTTATAAATGTTCTTGTTGTTCTGCTGATGAATTGTAATGTGCACAATGTGAAGTCAGCAGCAGCTCACTGTGTATCGTACAGAGGAGATGTGTGAAATTGTCTCTAACAAGACCACTTACGTAAAAAGAGAGTGAAGGATTCCCCTCATCCACTCAGGAAGGCGGCAGCATCAGCGTATTCATGCTGACTCAGTCAAAGgcggcaacaacaacaacaacagcaacagaaTCCTCCTCCGTGCTGCGTTTGTGTGACATTAGGCTGAGCAGCTGGAGAGTTACTGGTGATTGTTTGGACGTGGGAAGATGACACTGATCTCATGGTATTCATCTTTTGTTCTTTACTCGAGGTTCTCGCTGCATTCCTGAGGAAATGTAAAACAGAGACGGAAATAGAGGTTTACCATAATCCTCTGGGAAAAATCCACAAGAGTGAATTCAGCCACAtaaaaagatgaagaaaacatgtaaaaacaaacacCTAAATGATTGATTGAAATCATACCTTTCTATACGTTATCCATCTGTGGTACCTCCTGCAGCAGCCCAGAAGACTGACTTGGCCAGATTTTAGCCTCCCA
>XM_039781556.1
GGGAACGCAGTTTAGACAGTAACCCAAGCCAGAACAAACTGAAGAGCTAAAAATACCAACAGTCAACAAGCCGGCTGCTGTGGGACAGAGACAGGGGGCATTGGTGGGTCTTTACATAGGGGTTAGACAGGCTGACAGAGGGAGTGAAGGGATAGACAGCTGGGGAAAGATCCATTGTAAAAGCTAGAACAGAAGACGGCGAGGAAATAcgactttaaaaaaactagaataTACCCCCAACTTGTGTTTCGCTGCTTGTTACCCTCTTCTGTCTTCTTGGACGTTTTGCTCACCGCTCCCTGGAGGGGATGAACTTTGCTCTCAGGCCTCCATCAGCAGGCAGTTCTGGGCCTGGCGCTGGCAGAGGAGCCACCATGGAGAACCTGGAGAAGCAGCTGATCTGCCCGGTGTGCCTGGAGATGTTCTCCAAACCTGTGGTCATCCTGCCCTGCCAGCACAACCTCTGCCGCAAGTGTGCCAACGACATCTTCCAGtCAACTAACCCTCTGTGGCAGTCCCGCGGCTCCTCCAGCATGGCTTCCAGCGGCACCCGCTTCCGCTGTCCGTCGTGCCGCCATGAGGTGGTGCTGGACCGCCACGGGGTCTTCGGTCTGCAGAGGAACCTGCTGGTGGAGAACATCATAGACatctacagacagcaggagTCAtccagGCTTGTGAACATAAAGCCagagcagcagaagcagcagctgctgtgtgAAGAACATGAAGAGGAGAAGATCAATATCTACTGCCTGTCCTGTGAGACGCCGACCTGCTCCATGTGCAAAGTGTTCGGAAAACACAAAGACTGTGAAGTGGCACCGCTCAGCAGCGTTTATATGAGACAGAagACAGACCTGAGCGACGGCATCGCTATCTTGGTCGCCAGCAACGACCACGTCCAGGCAGTCATCTCTCAGATGGAAGAAATCTGCCGCACTGTAGAGGAGAACGGTCAGCGGCAGAGGGAACAGCTAGCCATCCATTTCGACAGCCTGTTGGCCATCTTGGAAGAGCGGAAGCAGGAGCTGGTGGGGCTCATCACCAAACAACAGGACGATAAACTCAAACGTGTCCAATCTCTCATTCGTCAGCACAGCGATCACCTGGAGGCCGCGGTAACGCTGGTGGAGTCAGCCATTCAGTCGATGGAAGAGCCACACATGCCTGTGTTTATACAGAGCGCCAAAGTCATACTGGAAAAGATAGCAGTGACAGCCAGGGCCTCGAACATGGAGCGTCCAGAGCTCGGTTACGAGAGTATGAGCCATTTCTTCATCGATACCGACGATCTCGCTGACATGCTGAGGAACATCAACTTTTGCTCCGgtgtgggAGATAATGGAGAAGAAGATCCTGAAGAGTCAGAACTGGACTTCTGCTCCAGATTTTAAGACCATAACAGAGgaagcttttgttttgtttgacttttttattgGTTAAACATTTGAGTACAATGATTTGATATTCTCTGAGAGACATAACAGAAGGGGATACAAGGTGTTTGTTTCTGTCTTGAATCTCCCGGTTAACCTGTATTGATGAATTGATCAGGGTTTTGCATGGCCAGGGCTTTGTGGTTTGTTTTTTGGTTTAGAAAGTGTCAGACTTCACACATTAGTTATTCAGCTTCCAGTCATCAGCTAGAGCGGGCAAACCTGTAGCCCTGTCTCTCTTTTTGccaaatgttttaatgttttatacaCATAACGGACACACATTGGACTACAGAGTCTAATTCATAATATTTAGTTTTGAGGGACTAATAatggtttttatttgttaatttaGTCCTGAATTATAGATCTTTCACTGTTTTGGTGGGAAAATCTACAATTTTGACCAAAAAAGCCATACAATCTCAAAGTCCACTTAATAACCTTTCCTGGAGATTTCTTTTGCATCCCACATTCTTCATCAGCAGGTAGAGCTggctcagttgtcatggaggCCATTCACATCATGCACCAAAGACCACCTCTGAACAGAGACAGAAGTTTTACAActaaataaaatcaaacatttcCTCAGTTTGCTGTAGAAGATTATCCAGGAAACCTGAAAACTTATTTAAAGGGCcctttgataataataataatatattgatttaattcaattcaggtGCCTgcgaatttcaaaataaaggcgcaTCTTAAAGATATGTATCATCGATTTTCACTTTGCATCGATGATATTGGATCGTTGATCACTGAAGCGATATATCGATCCAGATCGATGTATCGTTACAGCCCTAATAAATACATGGCACCCTAAAGGTTCACTTCATGTCTTGATCATAAAATGCCTCATATTTAAAGTGTTTCAATGAGAATCCTGCAGACAAACAAGTTtctaaaaatgcaaaaacaaaactgaCAGCTCTTAAACTGAAGTTGTTCAAATGTGTCAGAGCCTGTTTATAAATGTTCTTGTTGTTCTGCTGATGAATTGTAATGTGCACAATGTGAAGTCAGCAGCAGCTCACTGTGTATCGTACAGAGGAGATGTGTGAAATTGTCTCTAACAAGACCACTTACGTAAAAAGAGAGTGAAGGATTCCCCTCATCCACTCAGGAAGGCGGCAGCATCAGCGTATTCATGCTGACTCAGTCAAAGgcggcaacaacaacaacaacagcaacagaaTCCTCCTCCGTGCTGCGTTTGTGTGACATTAGGCTGAGCAGCTGGAGAGTTACTGGTGATTGTTTGGACGTGGGAAGATGACACTGATCTCATGGTATTCATCTTTTGTTCTTTACTCGAGGTTCTCGCTGCATTCCTGAGGAAATGTAAAACAGAGACGGAAATAGAGGTTTACCATAATCCTCTGGGAAAAATCCACAAGAGTGAATTCAGCCACAtaaaaagatgaagaaaacatgtaaaaacaaacacCTAAATGATTGATTGAAATCATACCTTTCTATACGTTATCCATCTGTGGTACCTCCTGCAGCAGCCCAGAAGACTGACTTGGCCAGATTTTAGCCTCCCACATTGTTTCCTTTTGTTctgtataaaaacaataaaattaaaaaacatccAATGTATTGTGTTTAAATATATCTCTCTATGTATAGCTCACAGGAAATGTATACAGTGGATTTAGCACTGTATTCTGTGCTGTGGGAGGGAAAAGATTTTGTTCATGTTGGTCTTTTTCTTCCGGATTTAAAGCCCATATATAGCTTTTCTGTCACAATACTTTCTAAAGGCTTCAGAGTTTTATAATTCTCTTCAGATTGTATGTAAATACATTTCCAACCCAAGCCTTCCAAGATGACCCACAtgaacattttctgatcagCCACCTCTATGCTTAAGGTTTTGTAAGGGTTGGGCACTTCACTGCTTTGTTAAAGGACGAGGCTGCTGCTATTCTGTATTTCTTCTATTGTCAacatgaaaaaaactaaaccaacAATTAATTGTTCCTACTACAAAGTATTGTGTGGGTATCCAAAGCCGGATAAATCTTATTCCTCTGCCATAAAGCCATTTTGTCCAAAAAACACATGTGTGAGCCATGCTGCAATAAATACTATGTGGTTTAATCcgctgctgaaaatagtccccagaaaatgcactatttactcctGCTTGCAGacagaaatatctcaacaactattggatggattgccattcaATTTGATACAAACATTCATCGTGCCCAGATGATGTATCGTAACGACTTTAATGATCCTGTggcttttcctctagcgccaccatgaggttgacattcaTGGTGTAGAGTGAAATTTCTCAAACATTGAATGGATTACAATAATGTTTTGTGCAACAATTCATGTTCCCCTGAAGTGTGAATTGTAACAACTTTGgtctttggtgatcccctgaccttACATTTAGCCCTATCATTACATTAAAATGTCTCCAGTA
>XM_039781557.1
GGGGAACGCAGTTTAGACAGTAACCCAAGCCAGAACAAACTGAAGAGCTAAAAATACCAACAGTCAACAAGCCGGCTGCTGTGGGACAGAGACAGGGGGCATTGGTGGGTCTTTACATAGGGGTTAGACAGGCTGACAGAGGGAGTGAAGGGATAGACAGCTGGGGAAAGATCCATTGTAAAAGCTAGAACAGAAGACGGCGAGGAAATAcgactttaaaaaaactagaataTACCCCCAACTTGTGTTTCGCTGCTTGTTACCCTCTTCTGTCTTCTTGGACGTTTTGCTCACCGCTCCCTGGAGGGGATGAACTTTGCTCTCAGGCCTCCATCAGCAGGCAGTTCTGGGCCTGGCGCTGGCAGAGGAGCCACCATGGAGAACCTGGAGAAGCAGCTGATCTGCCCGGTGTGCCTGGAGATGTTCTCCAAACCTGTGGTCATCCTGCCCTGCCAGCACAACCTCTGCCGCAAGTGTGCCAACGACATCTTCCAGtCAACTAACCCTCTGTGGCAGTCCCGCGGCTCCTCCAGCATGGCTTCCAGCGGCACCCGCTTCCGCTGTCCGTCGTGCCGCCATGAGGTGGTGCTGGACCGCCACGGGGTCTTCGGTCTGCAGAGGAACCTGCTGGTGGAGAACATCATAGACatctacagacagcaggagTCAtccagGCTTGTGAACATAAAGCCagagcagcagaagcagcagctgctgtgtgAAGAACATGAAGAGGAGAAGATCAATATCTACTGCCTGTCCTGTGAGACGCCGACCTGCTCCATGTGCAAAGTGTTCGGAAAACACAAAGACTGTGAAGTGGCACCGCTCAGCAGCGTTTATATGAGACAGAagACAGACCTGAGCGACGGCATCGCTATCTTGGTCGCCAGCAACGACCACGTCCAGGCAGTCATCTCTCAGATGGAAGAAATCTGCCGCACTGTAGAGGAGAACGGTCAGCGGCAGAGGGAACAGCTAGCCATCCATTTCGACAGCCTGTTGGCCATCTTGGAAGAGCGGAAGCAGGAGCTGGTGGGGCTCATCACCAAACAACAGGACGATAAACTCAAACGTGTCCAATCTCTCATTCGTCAGCACAGCGATCACCTGGAGGCCGCGGTAACGCTGGTGGAGTCAGCCATTCAGTCGATGGAAGAGCCACACATGCCTGTGTTTATACAGGATAGCAGTGACAGCCAGGGCCTCGAACATGGAGCGTCCAGAGCTCGGTTACGAGAGTATGAGCCATTTCTTCATCGATACCGACGATCTCGCTGACATGCTGAGGAACATCAACTTTTGCTCCGgtgtgggAGATAATGGAGAAGAAGATCCTGAAGAGTCAGAACTGGACTTCTGCTCCAGATTTTAAGACCATAACAGAGgaagcttttgttttgtttgacttttttattgGTTAAACATTTGAGTACAATGATTTGATATTCTCTGAGAGACATAACAGAAGGGGATACAAGGTGTTTGTTTCTGTCTTGAATCTCCCGGTTAACCTGTATTGATGAATTGATCAGGGTTTTGCATGGCCAGGGCTTTGTGGTTTGTTTTTTGGTTTAGAAAGTGTCAGACTTCACACATTAGTTATTCAGCTTCCAGTCATCAGCTAGAGCGGGCAAACCTGTAGCCCTGTCTCTCTTTTTGccaaatgttttaatgttttatacaCATAACGGACACACATTGGACTACAGAGTCTAATTCATAATATTTAGTTTTGAGGGACTAATAatggtttttatttgttaatttaGTCCTGAATTATAGATCTTTCACTGTTTTGGTGGGAAAATCTACAATTTTGACCAAAAAAGCCATACAATCTCAAAGTCCACTTAATAACCTTTCCTGGAGATTTCTTTTGCATCCCACATTCTTCATCAGCAGGTAGAGCTggctcagttgtcatggaggCCATTCACATCATGCACCAAAGACCACCTCTGAACAGAGACAGAAGTTTTACAActaaataaaatcaaacatttcCTCAGTTTGCTGTAGAAGATTATCCAGGAAACCTGAAAACTTATTTAAAGGGCcctttgataataataataatatattgatttaattcaattcaggtGCCTgcgaatttcaaaataaaggcgcaTCTTAAAGATATGTATCATCGATTTTCACTTTGCATCGATGATATTGGATCGTTGATCACTGAAGCGATATATCGATCCAGATCGATGTATCGTTACAGCCCTAATAAATACATGGCACCCTAAAGGTTCACTTCATGTCTTGATCATAAAATGCCTCATATTTAAAGTGTTTCAATGAGAATCCTGCAGACAAACAAGTTtctaaaaatgcaaaaacaaaactgaCAGCTCTTAAACTGAAGTTGTTCAAATGTGTCAGAGCCTGTTTATAAATGTTCTTGTTGTTCTGCTGATGAATTGTAATGTGCACAATGTGAAGTCAGCAGCAGCTCACTGTGTATCGTACAGAGGAGATGTGTGAAATTGTCTCTAACAAGACCACTTACGTAAAAAGAGAGTGAAGGATTCCCCTCATCCACTCAGGAAGGCGGCAGCATCAGCGTATTCATGCTGACTCAGTCAAAGgcggcaacaacaacaacaacagcaacagaaTCCTCCTCCGTGCTGCGTTTGTGTGACATTAGGCTGAGCAGCTGGAGAGTTACTGGTGATTGTTTGGACGTGGGAAGATGACACTGATCTCATGGTATTCATCTTTTGTTCTTTACTCGAGGTTCTCGCTGCATTCCTGAGGAAATGTAAAACAGAGACGGAAATAGAGGTTTACCATAATCCTCTGGGAAAAATCCACAAGAGTGAATTCAGCCACAtaaaaagatgaagaaaacatgtaaaaacaaacacCTAAATGATTGATTGAAATCATACCTTTCTATACGTTATCCATCTGTGGTACCTCCTGCAGCAGCCCAGAAGACTGACTTGGCCAGATTTTAGCCTCCCACATTGTTTCCTTTTGTTctgtataaaaacaataaaattaaaaaacatccAATGTATTGTGTTTAAATATATCTCTCTATGTATAGCTCACAGGAAATGTATACAGTGGATTTAGCACTGTATTCTGTGCTGTGGGAGGGAAAAGATTTTGTTCATGTTGGTCTTTTTCTTCCGGATTTAAAGCCCATATATAGCTTTTCTGTCACAATACTTTCTAAAGGCTTCAGAGTTTTATAATTCTCTTCAGATTGTATGTAAATACATTTCCAACCCAAGCCTTCCAAGATGACCCACAtgaacattttctgatcagCCACCTCTATGCTTAAGGTTTTGTAAGGGTTGGGCACTTCACTGCTTTGTTAAAGGACGAGGCTGCTGCTATTCTGTATTTCTTCTATTGTCAacatgaaaaaaactaaaccaacAATTAATTGTTCCTACTACAAAGTATTGTGTGGGTATCCAAAGCCGGATAAATCTTATTCCTCTGCCATAAAGCCATTTTGTCCAAAAAACACATGTGTGAGCCATGCTGCAATAAATACTATGTGGTTTAATCcgctgctgaaaatagtccccagaaaatgcactatttactcctGCTTGCAGacagaaatatctcaacaactattggatggattgccattcaATTTGATACAAACATTCATCGTGCCCAGATGATGTATCGTAACGACTTTAATGATCCTGTggcttttcctctagcgccaccatgaggttgacattcaTGGTGTAGAGTGAAATTTCTCAAACATTGAATGGATTACAATAATGTTTTGTGCAACAATTCATGTTCCCCTGAAGTGTGAATTGTAACAACTTTGgtctttggtgatcccctgaccttACATTTAGCCCTATCATTACATTAAAATGTCTCCAGTA

Function

symbol description
trim54 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in Z disc. Predicted to be active in cytoplasm. Is expressed in gill; male organism; and muscle. Orthologous to human TRIM54 (tripartite motif containing 54).

NR:

description
tripartite motif-containing protein 54-like isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10653 TRIM54, MURF3; tripartite motif-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
TU254851 False 1583 lncRNA 0.38 1 29130213 29131795
XM_039781556.1 True 3906 mRNA 0.43 8 29110959 29132700
XM_039781557.1 False 3884 mRNA 0.43 7 29110958 29132700

Neighbor

gene id symbol gene type direction distance location
LOC120547117 gpr31,LOC104934219,LOC104957175 coding upstream 186195 28917291 ~ 28924763 (+)
gpr31 NA coding upstream 204578 28902376 ~ 28906380 (+)
LOC120547119 NA coding upstream 238355 28866213 ~ 28872603 (+)
plg plg coding upstream 324140 28773325 ~ 28786818 (+)
vgll2a vgll2,LOC102778318 coding upstream 362766 28741168 ~ 28748192 (+)
slc30a2 slc30a3,LOC102796772 coding downstream 63469 29196169 ~ 29220727 (+)
LOC120546480 NA coding downstream 183059 29315759 ~ 29371150 (+)
LOC120546866 LOC103363081,LOC108247050,LOC101159876,LOC107104461 coding downstream 728674 29861374 ~ 29875824 (+)
LOC120546867 NA coding downstream 744221 29876921 ~ 29882724 (+)
LOC120546870 NA coding downstream 762725 29895425 ~ 29943833 (+)
G188122 NA non-coding upstream 65412 29044283 ~ 29045546 (+)
G188104 NA non-coding upstream 127078 28983644 ~ 28983880 (+)
G188101 NA non-coding upstream 129334 28978955 ~ 28981624 (+)
G188100 NA non-coding upstream 133333 28976970 ~ 28977625 (+)
G188097 NA non-coding upstream 137047 28973599 ~ 28973911 (+)
G188168 NA non-coding downstream 5373 29138073 ~ 29143547 (+)
G188172 NA non-coding downstream 24605 29157305 ~ 29161893 (+)
G188206 clvs2,LOC101073081 non-coding downstream 251510 29384210 ~ 29384442 (+)
G188208 NA non-coding downstream 294725 29427425 ~ 29428647 (+)
G188177 smpdl3a non-coding downstream 310647 29443347 ~ 29447023 (+)
G188063 NA other upstream 219594 28886490 ~ 28891364 (+)
ttll2 ttll2 other upstream 227837 28872686 ~ 28883121 (+)
afdna afdn,LOC102779179 other upstream 461835 28539400 ~ 28649123 (+)
LOC120546215 LOC104930085 other upstream 2072730 27028105 ~ 27038228 (+)
LOC120546586 dtnb other upstream 2373155 26695430 ~ 26737803 (+)
G188167 ucn other downstream 1471 29134171 ~ 29136917 (+)
si:ch211-245h14.1 NA other downstream 160005 29292705 ~ 29312364 (+)
G188207 clvs2,LOC107675107 other downstream 286676 29419376 ~ 29420727 (+)
G188268 fabp7,LOC105924611,LOC105419070,LOC101079341,LOC102793361,LOC107727581 other downstream 329149 29461849 ~ 29463874 (+)
G188296 LOC107662224,LOC107746645,LOC107750038,LOC107712283,LOC107663761 other downstream 512554 29645254 ~ 29645823 (+)

Expression


Co-expression Network