G188177 (smpdl3a)


Basic Information

Item Value
gene id G188177
gene name smpdl3a
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29443347 ~ 29447023 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU254866
CACtgtgatatgtaacatgtcgtcttccatttatttattctttagaGAGTGAAAAACTGGCCGTTTTTCTGGCTGTACCTACCTCTGCACTAAAGAAAATGTTTCTTCTGGTTACTCAGTACTCACTGACTGTAGAGTCTGTAGGAGTTGCACTTTATTGGGTTGACTGCTGTATGTTAATTTAACCGTTTTGGGGTCAATTCTTCATGTAAACATTACTATTTTTAATCTGATCGGATTTAAATCCATCTTGTAATTTAACCCACCGCACATATTGAAATATGTTATATTACGGAAGTTAAAGACGCTCCCACCGCCATTTTTCTGCGGctaaatataaaatactgttCAGTACTTATGTTTAATCAACACCATCtgctagggttgggcatcgtttagattttttacaattctgattccaattcttcCTTTAGATTCCCATTCATATCGATACTCggttccgattctttgaggggtggagttaaAATGGGTCACacgcttatttcacaaataataatatatataatatttttttccaatGGTGATGTAcagcgaatgcagaagtgccattCACCCTGCTACGAGTTGATGAACTACTGTAACGATTTTggaaggtacaaaagaatctttggttcggctttaaatttggaaccgatgatcaGATTCAAAACGATTCCAACAAAGAAACAATTCgattggaatcgtaattttgGAAACGATTCCAAGGtggaaccggttctcgatgcccaatcctagcaTCCGCTCAAGTGATGGTCGACATTTGGCAGCAATTAGATCATTCCAGAGATTAGGTTTAAACCATTGGTGCTGGGAAAACAGAGACTAATGGGCTCAACTCAATCTGTGAACGGATTTCAAGTGAACTACTACACCTTAATCTGTTTTATAAAGCACACTGAGGAAGAGTATCCAGCTAAAAGCCATCACGCCTCAATGATTTCCTTAATAAAGTCGACACTCTCAAAACTAACACGCAGACGAGTTGGAGATTCTTTTTAATGCTTTGTATCAGTGCATTTTCTCTATTTTCAATTACTTATGGATAGGTTCCCATaccaaaatgtaatattttagaTGGAATATCCAGTAATAGTAACATACAAGTTATTGTATTGCCTTTCATCCCAGGATAAATAGGAGCACTGTGTGCCGTTTCCATCGTCATGACTCTGTATTACTGAACGTTCCTAAAGTTAAACTACAAATTTACCCTGAAATTGTGCAATTTATAGTCTGGATTGCACATGGAGGACTTTTAATACCAAAAAGTAATAATTCTCAGATTGAATATCACCCGATGAAGAACCAtcttggagaaaaaaagttaaagtaaaatagtttaatttataattggTGGCGGCAGAAACAGTCCATTGTATTTCCCTTTTTATGATTccagtattcaagtaaaaaatgtatcatttaaaacattttaaaaagctcaATGTGACTCCCGAGACACATATCTCGGGAACACTCGAAACGCTGGAAGGCAGATGAGTTAGAggactttttatactttaaatGCTGCTcaattaagatatttataagaCTTCTGTCAAGTGTATTGAATATTTATCAAttactagagatgttccgataccaggACAGGttcaaatctgggtggggaaagtgaaagagcagcgcttgtctctccctcattaccaccactgaggtgcccttgagcaaggcccttaacccccgctccagtggagctgctcagtggccagcacatcagactgtggttgtactgggcagcttccaggtatgaatgtggaactgtgtgaatgtgatcagggcaaAGGAGAAGtttcctctcagtgaaccttccctgaataaataaaggttaaaaaaaaaaaaaaaaaacttgtgttgtctttgggtcaaatttgatccgttgtctaaatgtctatatcagaaatatgggtttctttttaactacctcATTTGGATTACCCAAAAAATAACACAGATGATCCCATACAacgcaagtacaacaaaagatcggatctctactttcattgaattttgggtgcattttttgaaaaaaagtatgaaaacaaaaaaaaaaagtttgatacAGTATCCAGGCTGAACGTTGACCCTTCTGTGActatccttcctttaatattagtctaaataattcataatttctgcttttttaactcaagaattaggtataatttcctataaacaAGGttttttattgaccatgaattccaagtAAGTAATAAGCGTAAAACTTATGAGTTGAGTTATGAGTTAGTGTTggtggtgtttatacatggtagaGAAAAGAAGCattaaacgtaaaaaaaaagcgccaaaaaacattgaataaaagcgccgaaagtgtcaaaaaaacagacaaaaatgtcagaaaaagtgttgattttcagttttgaccgGGAGCACGATGCATGGTCGAAtggcaacacaagggttaaaaaaaactccaatactgcctaaaatgctggtattggAAAGAACTGGAGTTCAAGCACAGATCCGATACCATGTAATTTAGCCCTGAATATTTatgttatgttctttttccgttataattGACTGTCAAAACTGGGAAAAAAGAAGGTTATGTAGCATTCATtgcttgtgtttgttcatgtttcacaaaaagtTCATCCTAAACTAGTCCACAAAGCAAAAGacagaaatcatatcacatccatacagggatggTAGTATACAGCCTTTTCCTGTTCACAGTCCGTGATGGGAGTGCCACTTTTGTGAATGAATGACGTCAATCAAGAGCTGGACCTGATTGGTCCTGGTTAGTCAACCAAACTATTTAAGGCTATGGTTGGggtgaatgtgtgaatttacctgatgaaggtctgagactgaaacgttgtatttttcttctaaataaattattgcttgcgtaatggtcagtgtgcgggattttctcaaaaaaaataaaaataaaaaaaatatatgacacactggtattggatcagtactcggtatcggccgatactcAAGTTCAGGTATTGGAATCGGTAAGtgaaaaatggtatcggaccatctctagaaATGACTGATTCACTGTGAAATTGTGCAATTTGTAATCTGGACTGCATGTGGAAAACTTTCAATACCAGAAAGTAAAATGTAAGTTGAAGTTAAAATCGTAACAGTAAAAAGGTAGATTCATATTTGGGAGCAGCAGAATCagtgcatgtcattccccttttcATAACTCAAGCAGAgtccaaaaataaaatgattctaAAAATCATAGACTAAATGGGACTCCTGAGACAAAGCCCTCATTTTTTGGTCCCTCTCCCTGCTACCATTCTGCCTTAGCGACACATTTGGAGTAGGACAGTTGGTCCAGGCAGAGCACAGCACACACCTGGCTGAGCTTACAGTCACCTTCGCAGGTGATGCTGCTGTTGTAGTTGACCATGAAGTGGCTGAAATACAAGTCGAAGGCTTTGGTCTGCGGCAGCCTGAAGCTCAGGCCCAGCTGGAGCAAGCTCTGTGGCTGCAGGTCAGTCAGTCCAAAAGCCTCGGTCATGATATATTCAAGCCTCCAGTCAGATCTTTGTTTCTCGTTGGCTTCCGTCAGGTTCAAATAGTACTGC

Function

symbol description
smpdl3a Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3A (sphingomyelin phosphodiesterase acid like 3A).

NR:

description
PREDICTED: acid sphingomyelinase-like phosphodiesterase 3a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254866 True 3635 lncRNA 0.38 2 29443347 29447023

Neighbor

gene id symbol gene type direction distance location
LOC120546480 NA coding upstream 72197 29315759 ~ 29371150 (+)
slc30a2 slc30a3,LOC102796772 coding upstream 222620 29196169 ~ 29220727 (+)
LOC120547117 gpr31,LOC104934219,LOC104957175 coding upstream 518584 28917291 ~ 28924763 (+)
gpr31 NA coding upstream 536967 28902376 ~ 28906380 (+)
LOC120547119 NA coding upstream 570744 28866213 ~ 28872603 (+)
LOC120546866 LOC103363081,LOC108247050,LOC101159876,LOC107104461 coding downstream 414351 29861374 ~ 29875824 (+)
LOC120546867 NA coding downstream 429898 29876921 ~ 29882724 (+)
LOC120546870 NA coding downstream 448402 29895425 ~ 29943833 (+)
LOC120546436 NA coding downstream 565132 30012155 ~ 30022642 (+)
LOC120546869 NA coding downstream 581927 30028950 ~ 30083063 (+)
G188208 NA non-coding upstream 14700 29427425 ~ 29428647 (+)
G188206 clvs2,LOC101073081 non-coding upstream 58905 29384210 ~ 29384442 (+)
G188172 NA non-coding upstream 281454 29157305 ~ 29161893 (+)
G188168 NA non-coding upstream 299800 29138073 ~ 29143547 (+)
G188122 NA non-coding upstream 397801 29044283 ~ 29045546 (+)
G188281 NA non-coding downstream 91152 29538175 ~ 29538452 (+)
G188288 NA non-coding downstream 129201 29576224 ~ 29578102 (+)
G188290 NA non-coding downstream 132612 29579635 ~ 29605099 (+)
LOC120546861 NA non-coding downstream 212233 29659256 ~ 29660735 (+)
LOC120546865 NA non-coding downstream 340938 29787961 ~ 29793679 (+)
G188207 clvs2,LOC107675107 other upstream 22620 29419376 ~ 29420727 (+)
si:ch211-245h14.1 NA other upstream 130983 29292705 ~ 29312364 (+)
G188167 ucn other upstream 306430 29134171 ~ 29136917 (+)
trim54 trim54,LOC103375614 other upstream 310647 29110958 ~ 29132700 (+)
G188063 NA other upstream 551983 28886490 ~ 28891364 (+)
G188268 fabp7,LOC105924611,LOC105419070,LOC101079341,LOC102793361,LOC107727581 other downstream 14826 29461849 ~ 29463874 (+)
G188296 LOC107662224,LOC107746645,LOC107750038,LOC107712283,LOC107663761 other downstream 198231 29645254 ~ 29645823 (+)
btbd9 btbd9 other downstream 637525 30084548 ~ 30097239 (+)
angel2 NA other downstream 877949 30324972 ~ 30336202 (+)
G188352 NA other downstream 1164658 30611681 ~ 30882446 (+)

Expression


Co-expression Network