G188809 (xrn2)


Basic Information

Item Value
gene id G188809
gene name xrn2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31918999 ~ 31927133 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU255856
CCACCTTCTTCCTGAAGTCCTCATCCTCCACGTCCACGTCAAACTTGGTCTTGTAGTATCTCTGCTTCCAGCCGTCCTCCCACAACCTGACGTTGTCTTCAGGCTCCGGCTCGCTGTCACTGTCCTCAGCTTTCCTCTTCATCCCCCGGTTGTCTGCGCTGCCGCTGGCCCCTGCAGACGAATTGCCACCGTTCTTCATCGTGGCCTTCAGGAACTGAGCAGCAtcCTTGTTGTGCTGCATCCTCATGTCGTAGGCCTGGTGCCGGGCGTTCTGGACGGCCTCGGGTCGGTCTCTTCTCCCCAGGGCCTGAGGGGCAAACTGGCCCGTGGTCATGTAGGCGGGACCCCGCTGCTCTGCCTTCATCCTCTTTCGTTTCTCTTTCATTCTTCTCTTAAAGCCTTCGTCGTCCTCTTTGCGTTTCTTGAAGATGTTGTCCTCAGCCACGCCCACCGCCTGCATGATCAGCTCCACCCTCTCCAGGTTGACATAGCCATTCTCTG

Function

symbol description
xrn2 Predicted to enable 5'-3' exoribonuclease activity and RNA binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in adenoid cystic carcinoma and lung cancer. Orthologous to human XRN2 (5'-3' exoribonuclease 2).

NR:

description
PREDICTED: 5'-3' exoribonuclease 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255856 True 501 lncRNA 0.58 6 31918999 31927133

Neighbor

gene id symbol gene type direction distance location
nkx2.4b nkx2-4,LOC103364681,LOC102215835,LOC102780891 coding upstream 34197 31881465 ~ 31884802 (+)
nkx2.2b NA coding upstream 49703 31866894 ~ 31869296 (+)
cebpz LOC104961443,LOC104960473 coding upstream 162081 31735570 ~ 31756918 (+)
LOC120547115 prkd3,LOC103372736 coding upstream 214636 31620408 ~ 31704363 (+)
LOC120546439 NA coding upstream 332050 31582418 ~ 31586949 (+)
crnkl1 crnkl1 coding downstream 166818 32093951 ~ 32105660 (+)
cd109 NA coding downstream 184457 32111590 ~ 32145910 (+)
senp6a NA coding downstream 608602 32535735 ~ 32569277 (+)
nt5e NA coding downstream 1172236 33099369 ~ 33127591 (+)
bub1 NA coding downstream 1274272 33201405 ~ 33228839 (+)
G188785 NA non-coding upstream 7700 31839806 ~ 31911299 (+)
G188757 NA non-coding upstream 166793 31674705 ~ 31752206 (+)
G188768 NA non-coding upstream 197712 31720092 ~ 31721287 (+)
G188763 NA non-coding upstream 208028 31708879 ~ 31710971 (+)
G188761 NA non-coding upstream 215352 31703031 ~ 31703647 (+)
G188816 LOC106633344,LOC106098344,LOC106674933,LOC106456206,LOC108426271 non-coding downstream 20065 31947198 ~ 31952652 (+)
G188818 NA non-coding downstream 41490 31968623 ~ 31968941 (+)
G188819 NA non-coding downstream 58179 31985312 ~ 31986086 (+)
G188960 NA non-coding downstream 215983 32143116 ~ 32143380 (+)
G188971 NA non-coding downstream 275129 32202262 ~ 32202553 (+)
LOC120546196 LOC105017826 other upstream 136933 31776963 ~ 31782066 (+)
LOC120546816 NA other upstream 304477 31606054 ~ 31614522 (+)
hivep2a LOC103373864 other upstream 609603 31169067 ~ 31309396 (+)
G188352 NA other upstream 1036553 30611681 ~ 30882446 (+)
myo6a myo6,LOC103369425 other downstream 649323 32576456 ~ 32767003 (+)
mei4 NA other downstream 1038705 32965838 ~ 33041169 (+)
pex7 pex7,LOC102797744 other downstream 1400959 33328092 ~ 33386989 (+)
LOC120546192 slc35d3,LOC102797457 other downstream 1472668 33399801 ~ 33416086 (+)
G189269 NA other downstream 1526863 33453996 ~ 33458768 (+)

Expression


Co-expression Network