G189027


Basic Information

Item Value
gene id G189027
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32563850 ~ 32570635 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU256144
tagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgttcttgtttaactatattcgtggggtccgaaaaccgggaatacagtatacttgtggggtccggacagctttgtggggccaaaatgctggaccccacaagtttaaagggctgtttgagggttaagacttggttttaggattagggttagaattaggttatggttagggtgagggtaagggttaaggttaggcatttagttgtgatggttaaggttagggtaagggttaaggttaggcatttagttgtgatggttaaggtgagggtaaggggctagggaatgcattaggtcaatgacgggtccccacaaagatagtgaaactgtgtgtgtgtgtgtgtgtggttgtatttggcgcgtgtgtgtgcacctCTGCACcgatctgtttgtgtgtgtccatttTTTTCGGAGGACTTCACAGACTTGTATTCCATGTTGGTGTAAAAGTTGAGATTGaaagcactttattttttttgtagctgggaAACGATCTCACATTTAGCGGCTGCTCTGGAGCTTTCGATCATATAACATGAGCTTCAACCAGCACACGGTTTCGGTTGTGCCGAACATCAACTGAAGTTGCAGCGCCGGTCTGGGAGAGGGATTATTTCCAGGTCCCGAGACGTTTTGGACAGAAGACGCTGAGGcggtttcattttcttttaaaagggattaaaaatggaagaatgaaaaacaaacataagggactatcaaaaaaaaagacaaagacaacatGCTTCACATTAAAGAAGAGTATACGAGGTTTAGTAGTATTCTTGCtccaaatactcactagagcgccaaatgtggattaatccgctgctgaaaatagtccctaaGAAATGCACTGTTCTTCTGTTTGGTTGATTAAAAACTACAGTGATCGtctgttttaggaaattattgatgaaactatatatttgtgtcttttgttattttaagaTTTACGTTTATGGACTAACACAATGTTGGTTTTAAAGGGGAgttatgcagttttggcaatttcttcgctgttttctcgctttttgctagcaggtttctctatagagctccccctacagcttcggatatagatatagatatttggcaacgcTGTCTTAAAAACTTGTTGCCGACTCCCCCCAtcccatcttctccctctggtcGAACGGAGCCATGTCCACTGAGGCAGAAGGAACTTGtgtttgccaacatcaagccgacaagaaactctgtggcTGATCAAGTTTCTGATCAAAGATACTTACACGTGCAACAGCGAGAACGCCA

Function

GO:      GO:0035068

KEGG:

id description
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin

RNA

RNA id representative length rna type GC content exon number start site end site
TU256144 True 1308 lncRNA 0.43 2 32563850 32570635

Neighbor

gene id symbol gene type direction distance location
cd109 NA coding upstream 417940 32111590 ~ 32145910 (+)
crnkl1 crnkl1 coding upstream 458190 32093951 ~ 32105660 (+)
nkx2.4b nkx2-4,LOC103364681,LOC102215835,LOC102780891 coding upstream 679048 31881465 ~ 31884802 (+)
nkx2.2b NA coding upstream 694554 31866894 ~ 31869296 (+)
cebpz LOC104961443,LOC104960473 coding upstream 806932 31735570 ~ 31756918 (+)
nt5e NA coding downstream 528734 33099369 ~ 33127591 (+)
bub1 NA coding downstream 630770 33201405 ~ 33228839 (+)
LOC120546516 NA coding downstream 660399 33231034 ~ 33238327 (+)
LOC120546153 LOC103369399 coding downstream 709276 33279911 ~ 33286940 (+)
LOC120546181 adgrg6 coding downstream 1059165 33629800 ~ 33666253 (+)
LOC120547301 NA non-coding upstream 28623 32525522 ~ 32535227 (+)
G189024 NA non-coding upstream 48203 32515355 ~ 32515647 (+)
G189020 NA non-coding upstream 85358 32477854 ~ 32478492 (+)
G189013 tmem30a,LOC104951461,LOC107377958,LOC103366810,LOC108228983,LOC107101491,LOC103381310 non-coding upstream 107607 32454698 ~ 32456243 (+)
G189012 NA non-coding upstream 116711 32443638 ~ 32447139 (+)
G189035 NA non-coding downstream 79195 32649830 ~ 32650345 (+)
G189037 NA non-coding downstream 183955 32754590 ~ 32755953 (+)
G189034 NA non-coding downstream 188206 32758841 ~ 32761089 (+)
G189114 htr1e,htr1b,LOC103130375,LOC106909287,LOC103457078 non-coding downstream 394639 32965274 ~ 32965502 (+)
G189117 NA non-coding downstream 401375 32972010 ~ 32972221 (+)
LOC120546196 LOC105017826 other upstream 781784 31776963 ~ 31782066 (+)
LOC120546816 NA other upstream 949328 31606054 ~ 31614522 (+)
hivep2a LOC103373864 other upstream 1254454 31169067 ~ 31309396 (+)
G188352 NA other upstream 1681404 30611681 ~ 30882446 (+)
myo6a myo6,LOC103369425 other downstream 5821 32576456 ~ 32767003 (+)
mei4 NA other downstream 395203 32965838 ~ 33041169 (+)
pex7 pex7,LOC102797744 other downstream 757457 33328092 ~ 33386989 (+)
LOC120546192 slc35d3,LOC102797457 other downstream 829166 33399801 ~ 33416086 (+)
G189269 NA other downstream 883361 33453996 ~ 33458768 (+)

Expression


Co-expression Network