XLOC_004925 (LO017650.1)


Basic Information

Item Value
gene id XLOC_004925
gene name LO017650.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 39685485 ~ 39770387 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009672
GCCTCAAGAAGACAGAATTGAGGAGAATTAAGGATAAGATGCCCCATTTCGTCAGCCCTGCCATTCAGCAGTATCTTCGACGCAGAGCTCTGTTTCTTAATTGATTTCTTATCAAGGACTCTCCAGGAGTGATCGGATACAATGATAATCAATCAACTTACTTTCCTCCTGTTGTTCTGCTTGCTGGGCTGGAGCAGCGCAATGATCCGGCCGGTGCCTGGAATTAGCACGTCGGATCGGGATGGACGGACTCTACACCGCACTAAACGAGGATGGATGTGGAATAGTTTCTTTCTCTTAGAGGAATGGACAGGAACTGGAAAGCAGTATGTCGGAAAGCTTCACTCAGACATGGACACGGAAGATGGAAATGTGAAGTACGTCCTCACCGGAGAAGGAGCTGGAACTGTTTTCGAGATTGATGAGAACTCAGGCGATATTCATGCCACCAGGAGGCTTGACAGGGAAGAGAAAGCGTCGTACACTCTGAGCGCTAAAGCCGTCAACAAAACCTCTGGACAGGATCTGGAGAGGGCCTCCGAATTCATCATCAAAATCCATGACATCAATGACAACGAGCCAAAGTTCGCCAAGGACACCTACGTGGCCAGCGTATCTGAGATGTCCAATGTTGGTGCATTTGTAATGAAAGTTACAGCCTCTGATGCAGATGATGAAGCGTATGGAAACAGCGCCAAGCTGGTTTACAGCATTCTGCAGGGCCAGCCGTACTTCTCAATCGAACCTGAGACGGGCGTCATAAGGACGGCTCTGCCAAACATGATCCGGGAGAACCGGGAGCACTATCAGGTGGTGATTCAGGCTAAGGACATGGCCGGACAGATGGGAGGTCTTTCTGGGACCACAACAGTCAACATCACTCTTCTGGACGTCAACAATAGCCCTCCTCGATTCCCTCACAGTAACTACCATCTCTCCACTCCCGAGTCCACCGAAATCGGATCATCGGTGGGTCGGATCAAAGCATACGACGCAGATGTGGGGGAGAACGCAGAGATGTGGTACTCTATCCTGGAAGGGGATGGGCAAGATGTGTTCAATATCATCACGGACAGCACTAGCCAAGAAGGAGTGATAATGGTAAAGAAGCAACTAGATTACGAGAGCAGAAGATTGTACTCACTGCGGGTGCAGGTGACCAACACTCATATAGATCGACGCTTTGAGCAACAGGGGCCTTTCAGCGACACGGCGATAGTCCGGATCACTGTCACGGATGTGGATGAACCTCCGGTCTTCAGTCGAGCGCTGTACATTTTCGAGGTGGACGAAGACAGCCCTGTTGGAAGCTCGATTGGGATAGTGTCAGCTCGGGACCCGGATACAATCAGCCACCTGGTCAAATACACCATTGATCGCCACACAGACCTGGAGAGGCTGTTTAACATCGATTCCAACAATGGGACCATCAGCACACTGCAGGCGCTGGACAGAGAAACCTCCAAATGGCACAACATCTCGGTTTTGGCCACGGAGCTCAGTACTGCCCTGCAAACCAGAGTGCCGGTGTTTATCAAAGTGCGAGATGTGAATGACAATGCGCCGGAATTTGCCATGGACTTCCAGACCATTGTCTGTGAGAATGCCAGAGCCGGTCAGGCCATCCAGACTATAAGCGCTGTTGACACTGATGAACCACTGGTCGGACACAAGTTTGTTTTCAGTCTCAGTGTGATCAATCCAAACTTCACCATTTTCGATAATGAAGACAACACAGCGCAGATCCTGACCCGCCGGAGCGGCTTCAACCGCAGAGAGGTGAGCTCCTACTTGCTGCCCGTCATCATCTCCGACAATGATTACCCCATCCAGAGCAGCACCAGCACGCTGACGGTCCGCGTCTGCGCCTGTGACAGTCATGGAAATGTGCAGACGTGCAGCACCGAAGCCCTGCTGCTCTCAGCTGGACTCAGCACCGGAGCTCTGGTGGCCATCCTACTCTGCATTTTAATACTACTGAGTAAGTGTTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103903

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009672 True 1992 mRNA 0.51 10 39685485 39770387

Neighbor

gene id symbol gene type direction distance location
XLOC_004924 FQ311878.1 coding upstream 181807 39503564 ~ 39503678 (+)
XLOC_004923 BX294100.3 coding upstream 255168 39430202 ~ 39430317 (+)
XLOC_004922 NA coding upstream 430112 39253189 ~ 39255373 (+)
XLOC_004921 si:dkeyp-106c3.2 coding upstream 480431 39203745 ~ 39205054 (+)
XLOC_004920 si:dkey-239b22.2 coding upstream 624299 39034225 ~ 39061186 (+)
XLOC_004926 CR847968.1 coding downstream 435608 40205995 ~ 40518280 (+)
XLOC_004927 LO018394.1 coding downstream 641179 40411566 ~ 40411682 (+)
XLOC_004928 LO018644.1 coding downstream 758839 40529226 ~ 40660790 (+)
XLOC_004929 NA coding downstream 914379 40684766 ~ 41114078 (+)
XLOC_004930 NA coding downstream 1386472 41156859 ~ 41243282 (+)
XLOC_004911 NA non-coding upstream 1138210 38545828 ~ 38547275 (+)
XLOC_004910 NA non-coding upstream 1244159 38437785 ~ 38441326 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000136_01423304_01471867 NA coding CI01000136 null 1423304 ~ 1471867 (+)
bowfin (Amia calva) AMCG00019527 NA coding CM030124.1 CM030124.1 27353217 ~ 27379929 (-)