LOC120546652


Basic Information

Item Value
gene id LOC120546652
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34627478 ~ 34630935 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU256904
GACGACacacacgctctctctctctgacagacGGACGATAAGATTCACCTAAAGACTAAACCACCACTTTCTCTGAGAGAGGACAGCTATAGGAGGGAGTACTGGGAGTACTGGGAGTACTGGGAGTCCTACCACTTCAACCAGCTGCTGAATCCACAGACTGAACGAGAGATTTTATAGAAACAAAGACTCAAAGTGAACAGAAAATGGCTTCCAGATTAGAGGAAGATCTCTGCTGTCCTGTCTGCCATGAAGTCTTTAAAGATCCTGTCGTTCTGTCGTGCagccacagcttctgtaaagACTGTCTGCAGAGCTGGTGGACAGAGAAATCAGTCAAGGAGTGTCCA
>XM_039781765.1
CAAGacgaagacagaaaacaggaacaACACGTCCATGTTAAACTCAAACTGACAAACTGTAACGCTGAAGCTCCACCCGTCATGACTCGGCAGAGACAaaccaggaaacaggaagttaTTCTGCCTCACTGAGACGACacacacgctctctctctctgacagacGGACGATAAGATTCACCTAAAGACTAAACCACCACTTTCTCTGAGAGAGGACAGCTATAGGAGGGAGTACTGGGAGTACTGGGAGTACTGGGAGTCCTACCACTTCAACCAGCTGCTGAATCCACAGACTGAACGAGAGATTTTATAGAAACAAAGACTCAAAGTGAACAGAAAATGGCTTCCAGATTAGAGGAAGATCTCTGCTGTCCTGTCTGCCATGAAGTCTTTAAAGATCCTGTCGTTCTGTCGTGCagccacagcttctgtaaagACTGTCTGCAGAGCTGGTGGACAGAGAAATCAGTCAAGGAGTGTCCAGTTTGTAAAATATCTTCAAAGTCAGAACCAGCTTGTAGCCTGGTGTTGAAGAACCTGTGTGAGGCCTTTTTACaggagagagatcagagagtTTCAGAgtctctctgcagtctgcactctgagaaactcaaactcttctgtctggaccatcagcagccGGTGTGTGTCATCTGTCTGCATTCAGaagaacacaccaaacacagaTTCAAACCGGTCAATGAAGCTGCACGACAACACAGGAAGGAACTTCAGGAAACTCTGGAGTCATTAAAGGAGAAGATAGAGGTTTTTGAACAAGTTAAAGAGAAGTGTGATCAAACAGCAAAACACATAAAGGTCCAGGCTCGACGCACAGAGACGCAGATTAAGGATCAGTTTAAGAAACTTCACCAGTttctagaagaggaagaggaggccaggatggctgcactgagggaggaagaggagcagaagagtcagaggatggaggagaagatggatgatctgagcagagagatagcagctctttcagacacagtccGAGCCACAGTGGAGCAGGTGAGAGCTGAAGAcgtctcattcctgatcaactacaaggctgcagtggaaagagtccagcagagccccctgctggatgatccacagctgctctcaggagctctgatagacgaggccaaacacctgggcaacctgagcttcaacatctggaacaagatgaagggcatggtctcctacactcctgttattctggacccaaacactgctgatgcatatctcatcctgtctgaagatctgaccagtgtgagaccaggagagagacagcagcTTCCTGATAATCCAGAGAGGATGGATGACCCTTACTACTCTgtcctgggctctgagggctttaactcagggactcacagctgggatgTCGAGATTGGAGACAGTGAAGACTGGTCACTGGGTGTGATAGCAGAGTCTGTCCAGAGGAAGGGAGACTTACAGTCTGGATTATGGAGACTGTGTTTCTATGATGATGAATACTCAGCCAAGTCACCATCAGATCCAGACACTGATCTCCCGTTTAAGCAGCTCCAGAGGATcagagtgactctggactggaaCAGAAGAAAGCTGTCGTTCTCTGATCctgatactaacacacacatacacaccttcacacacactttcactgagagGATGTTTCCATACTTTGACACTTGTGAACTCATGATTTCACCAGTGAAGGTCTGTGTGACTGTAGAACAGAAATAGATAATGATAAGCATCTATCAGTGTATTTCAAGACGTGATGAAGTCTTTAAGGAACACATAATTATGTTGTTCTGATGATGACGTTGATCTAAGAGGGTGAACTAGTGAAGGTGTGATCCCGGACGAGCCCCCAATATGTTATGACCGGCTACAACAAAGAAGGGAGGTGCACTGCAAACatctgacatttttatgacatgtaTTAAAGTAATCAAAGACAA

Function

GO: NA

KEGG:

id description
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU256904 False 350 lncRNA 0.47 2 34627610 34629478
XM_039781765.1 True 1939 mRNA 0.47 2 34627478 34630935

Neighbor

gene id symbol gene type direction distance location
LOC120546672 NA coding upstream 3305 34622056 ~ 34624173 (+)
LOC120546456 NA coding upstream 31872 34584047 ~ 34595606 (+)
LOC120546680 rrm2 coding upstream 55630 34559932 ~ 34571848 (+)
LOC120547363 NA coding upstream 57384 34569956 ~ 34570094 (+)
LOC120547362 NA coding upstream 61871 34565469 ~ 34565607 (+)
LOC120546653 NA coding downstream 149403 34780338 ~ 34796403 (+)
LOC120546655 NA coding downstream 206263 34837198 ~ 34845092 (+)
LOC120546649 NA coding downstream 225901 34856836 ~ 34895534 (+)
LOC120546635 NA coding downstream 275056 34905991 ~ 34927163 (+)
allc allc coding downstream 297483 34928418 ~ 34941331 (+)
G189584 NA non-coding upstream 723 34624768 ~ 34626755 (+)
G189583 NA non-coding upstream 10026 34613621 ~ 34617452 (+)
LOC120546694 NA non-coding upstream 20136 34596185 ~ 34607342 (+)
G189549 NA non-coding upstream 35888 34590922 ~ 34591590 (+)
G189579 NA non-coding upstream 44975 34577317 ~ 34582503 (+)
G189589 cpsf3,LOC102220704,LOC107081181 non-coding downstream 22293 34653228 ~ 34662076 (+)
G189597 NA non-coding downstream 56589 34687524 ~ 34687887 (+)
G189601 NA non-coding downstream 77791 34708726 ~ 34736954 (+)
G189590 NA non-coding downstream 83967 34714902 ~ 34715433 (+)
LOC120546688 NA non-coding downstream 86102 34717037 ~ 34719185 (+)
G189555 NA other upstream 20140 34587078 ~ 34607338 (+)
LOC120546454 NA other upstream 42039 34531388 ~ 34585439 (+)
G189545 NA other upstream 75113 34549369 ~ 34552365 (+)
G189541 zdhhc14,LOC102790573,LOC102208331 other upstream 123723 34482864 ~ 34503755 (+)
G189570 NA other upstream 140301 34486424 ~ 34487177 (+)
G189582 NA other downstream 32080 34663015 ~ 34699491 (+)
LOC120546458 NA other downstream 172668 34803603 ~ 34827491 (+)
G189738 NA other downstream 378565 35009500 ~ 35010825 (+)
G189721 NA other downstream 383460 35014395 ~ 35076967 (+)
LOC120546683 NA other downstream 514554 35145489 ~ 35147428 (+)

Expression


Co-expression Network