G189589 (cpsf3,LOC102220704,LOC107081181)


Basic Information

Item Value
gene id G189589
gene name cpsf3,LOC102220704,LOC107081181
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34653228 ~ 34662076 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU256952
CTGATACCCTGGTTATGTGGGTCTGGCTCTGATACCCTGGTTATGTGGGTCTGGCTCTGATACCCTGGTTACGTGGGTCTGACTCTGATACCCTGGTTATGTGGGTCTGGCTCTGATACCCTTCAATTAAAAACCCACCTTGGCGAGCGTTCCCTCCACGCAGTACCCGGCGATGATGACGCCGTTCCTCTTGTCGGTGCACCAGCTCTCAAACAGCTCTCTGGACAGACCGCTCTGCATCATACCGGGAGACGCCATGACCACGCTGGGGCCGATGTCGTCAAAGTGGTCCATGCTCTTGAGGTTGCTGATGTGCTTGAAGACGAAGGGGTTGTTGACGTTGATGGCCTTGCGGATCTTGTCGTTCATGGCGTTGATGTAGGTCTGGTACACGGCCATGCACTTCCTGGCCAGAGACGAGGCGTAGTAGATGGGGATGTCGTGGAGCTCTGGGTGGTTCTGCCAGTACTCGtctacacaaacaaaaacacacacacacacacacacacacacacacacaca

Function

symbol description
cpsf3 Predicted to enable 5'-3' exonuclease activity; RNA binding activity; and endoribonuclease activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage and mRNA polyadenylation. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human CPSF3 (cleavage and polyadenylation specific factor 3).

NR:

description
cleavage and polyadenylation specificity factor subunit 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256952 True 522 lncRNA 0.55 2 34653228 34662076

Neighbor

gene id symbol gene type direction distance location
LOC120546672 NA coding upstream 29055 34622056 ~ 34624173 (+)
LOC120546456 NA coding upstream 57622 34584047 ~ 34595606 (+)
LOC120546680 rrm2 coding upstream 81380 34559932 ~ 34571848 (+)
LOC120546653 NA coding downstream 118262 34780338 ~ 34796403 (+)
LOC120546655 NA coding downstream 175122 34837198 ~ 34845092 (+)
LOC120546649 NA coding downstream 194760 34856836 ~ 34895534 (+)
LOC120546635 NA coding downstream 243915 34905991 ~ 34927163 (+)
allc allc coding downstream 266342 34928418 ~ 34941331 (+)
G189584 NA non-coding upstream 26473 34624768 ~ 34626755 (+)
G189583 NA non-coding upstream 35776 34613621 ~ 34617452 (+)
LOC120546694 NA non-coding upstream 45886 34596185 ~ 34607342 (+)
G189549 NA non-coding upstream 61638 34590922 ~ 34591590 (+)
G189579 NA non-coding upstream 70725 34577317 ~ 34582503 (+)
G189597 NA non-coding downstream 25448 34687524 ~ 34687887 (+)
G189601 NA non-coding downstream 46650 34708726 ~ 34736954 (+)
G189590 NA non-coding downstream 52826 34714902 ~ 34715433 (+)
LOC120546688 NA non-coding downstream 54961 34717037 ~ 34719185 (+)
LOC120546687 NA non-coding downstream 57971 34720047 ~ 34722697 (+)
G189577 NA other upstream 7918 34564785 ~ 34645310 (+)
LOC120546652 NA other upstream 22293 34627478 ~ 34630935 (+)
G189555 NA other upstream 45890 34587078 ~ 34607338 (+)
LOC120546454 NA other upstream 67789 34531388 ~ 34585439 (+)
G189545 NA other upstream 100863 34549369 ~ 34552365 (+)
G189582 NA other downstream 939 34663015 ~ 34699491 (+)
LOC120546458 NA other downstream 141527 34803603 ~ 34827491 (+)
G189738 NA other downstream 347424 35009500 ~ 35010825 (+)
G189721 NA other downstream 352319 35014395 ~ 35076967 (+)
LOC120546683 NA other downstream 483413 35145489 ~ 35147428 (+)

Expression


Co-expression Network