LOC120546470 (cdc42bpb)


Basic Information

Item Value
gene id LOC120546470
gene name cdc42bpb
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 36870560 ~ 36950069 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU257530
GAAACTATTTTCTCTGTCTGCAGATCGGGAGAGGATCGTCCTGGGAACAGAAGATGGACTGTTTGTGGTCGAGGTCACCAGAGacgtgaTCGTGCGAGCAGCAGACAGTAAGAGGGTCTATCAGATCGACCTGATCCCGAAGGAGAAGATCGTGGCTCTGCTCTGCGGGAGGAACCGACACGTCCACCTCCACCACTGGGGGGCCCTGGAGGGGGCCGAGGCCGCCTTCGACATCAAGCTGGCCGAGACCAAAGGCTGCCAGGCCCTGACCACCGGGCTGCTCCGGCCTGGGGGGCCCGCATGCCTGCTGGCTGCCATCAAACGCCAGGTCCTGTGCTACGAGGTGTCCCGTGTGAAGCCCTACCATAAGAAGCTGTGGGAGGTCCAGGCTCCGGGCCAGGCCCAGTGGCTCGGTATGGTGCGGGACCGGCTCTGCGTGGGCTACCCGTCTGGGTTCgccctgctggccctgcaggggGAGTCCTCCCCCATCAGCCTGGTGAGCCCGGCAGACCCGTCTCTGGCGTTCCTGTCCCCGGCGACGCCGATGGACGCGCTGCACGCCACCGAGGTGGGCCCGGCAGAACTGCTGCTCTGCTTCAGCCACCTGGGGGTCTACGTGGACGGGCAGGGGCGCAGGTCCAGGACCCAGGAGCTGATGTGGCCCGCCACGCCGCTAGCATGCAGCTCCAACTCGTCCCACCTGACCGTCTACAGCGAGTACGGCCTCGACGTCTTCGACATCCACACGGCCGAGTGGGTCCAGACCATCTCGCTGCGCAAGATCAGACCTCTGAATGTTGAGGGGACCTTGAACCTGCTGAGTTCAGAGCCGCCTCGTCTCATCTACTTCAGCAACACCTCGTCAGAGGGGGACCTGACCATCCCCGAGACATCGGACTACAGCAGGAAGTTGATGGTTCGAACTCGCAGTAAGAGGAAGTTCCTCTTTAAGGTTCCTGAGGAGGAGCGCCTTCAGCAGAGGAGGGAGATGCTGAGAGATCCAGAGCTCAGGTCAAAGATGATTTCTAATCCCACAAACTTCAACCACGTGGCCCACATGGGACCAGGAGACGGCATGCAGGTCCTCATGGACCTCCCTCTGagTGTGATGCCTTCGTCTCAGGAAGAGTCCATTAAagataagccccgcccactgtCCAGTATCTCCCGGCAACAGAGGAGCAAGACGCACATCACACGCACAGcttcagATTTTGGGAG
>TU257667
aaaaaaatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacagacacacacacacacacccactggTCTGacgtgtgtctctgtttgtctgcagTGTGCTCCTTCGTGTGCCATGTGACCTGTAAAGACCACGCCCCCCTGGTCTGTCCAATCCCAGCCGAGCACGCCAAGAGGCCGCAGGGCATCGACGTCCAGAGAGGCATCGGCACCGCCTACAAGGGCTACGTCAGGatCCCGAAGCCCAGCGGCGTGAAGAAGGGCTGGCAGCGAGCCTACGCTTTGGTCTCCGACTGCAAACTCTTTCTCTATGATGTCCCCGAGGGAAAGTCCACCCAGCCAGGGGTGGTGGCCAGTCTGGTGCTGGATCTCAGaGACGAGGAGTTCTCGGTCAGCTCGGTCTTAGCTTCAGATGTGATCCACGCCACCAGGAAGGACATCCCCTGCATCTTCAGGGTGACCTCGTCCCAGCTGACCTCCCAGCTGTCCTCGGTGTCCCTGCTGGTCCTGGCCGAGAGCGAGGTGGAGAAGAGGAAGTGGGTCCGGATCCTGGAGGGCCTGCAGAGCATCCTGACCCAGAACCTGCTGCAGAGCGCCC
>TU257668
cacacacacacacacacacacacacacacacacacacacacacacccacacacacccacacacacacacacacacacacagagagacacacacacacacagacacacacacacagagacacacacacacacagagacacacacacacacaaacacacacacagacacacacacacacacccactggTCTGacgtgtgtctctgtttgtctgcagTGTGCTCCTTCGTGTGCCATGTGACCTGTAAAGACCACGCCCCCCTGGTCTGTCCAATCCCAGCCGAGCACGCCAAGAGGCCGCAGGGCATCGACGTCCAGAGAGGCATCGGCACCGCCTACAAGGGCTACGTCAGGatCCCGAAGCCCAGCGGCGTGAAGAAGGGCTGGCAGCGAGCCTACGCTTTGGTCTCCGACTGCAAACTCTTTCTCTATGATGTCCCCGAGGGAAAGTCCACCCAGCCAGGGGTGGTGGCCAGTCTGGTGCTGGATCTCAGaGACGAGGAGTTCTCGGTCAGCTCGGTCTTAGCTTCAGATGTGATCCACGCCACCAGGAAGGACATCCCCTGCATCTTCAGGGTGACCTCGTCCCAGCTGACCTCCCAGCTGTCCTCGGTGTCCCTGCTGGTCCTGGCCGAGAGCGAGGTGGAGAAGAGGAAGTGGGTCCGGATCCTGGAGGGCCTGCAGAGCATCCTGACCCAGAACCTGCTGCAGAGCGCCC
>XM_039781397.1
ATGGGCCGGAAGTATTCTCCATCATACGCAGACATCTACCTGGCCCATTGGGAGGAAGCAGCTTTCCACAAACTCACCATCAAACCTCTGCTTTACTTCCGGTACTTGGACGACATCTTCGGCCTTTGGGACAACACCGAACAGACCTTTTTGACTTTTCTGGACATCCTCAACTCGCATCACcctaaaataaaactcaaacatAACCTACAGCCCGTTACAGTGGAGTTCCTGGACACACAGGTCTTCTTCCGCACCTCGTACGACCGGACCAAAACACTAGCCACCAAAGTTTATTTCAAGGACACCGACCGCCATGCACTTCTCCATAAGACCAGCTATCACCCCAAACACACGTACAGAGGCCTCATTAAGTCCCAGCTGATACGCTTCCACAGGATTTGCACCTTCCCGGAGCATGTGGAGGAGGCCACTAGTACACTTTTTGGTGCGATGAGGTTGAGGGGTTACTCGAGGCGCTTCCTTAGAGGTATAAAGGCGGAGGTCATCGGCAAGTTTACAAAGAAAACCAAAACCATCATCCAGGCGCCCAATTCCGCCCTCaagccttgtgtgtgtgtttgtcagctgGAGGCTCAGCTGGACGATTCGAAGGCCGAGGCCTCGAAGGAGAAGAAGCTGAGAGAGCACAGTGAGGTCTACTCCAAACAGCTGGAGACAGAGCTGGAGAACCTGAAGTCCCAGCAGGGTCTGGGTCCAGCGGCTGGGGGGGCGGAGCCTCAGCAGGAAGTGACCCGTCTGAAGGCAGAGCTCGATAAGAGGGTCCTGTTCTACGAGGAAGAACTGGTCCGCAGGGACTCGGCCCACTCCTCAGAGATCAAAAACCTCCGCAAAGACCTGCACGAGTCTGAGGGGGCCCAGCTCGCCGCCAACAAGGAACTGCTGCAGCTCCGGGACCGGCTGGACAAAGACAAGAGGGACAGACAAACCGAGATGGATGAAGCTGTTTCTGCTCTGAAGGAGAAATCTGAACGAGAGAAAAACCTGCTGACGGAGGAGAACCGCAAACTGACGGCCGAAACCGACAAGCTGTGTTCGTTTGTGGATAAACTGACGGCCCAGAACCGCCAGCTGGAGGACGAGCTGCAGGACCTGTCCTCTAAGAAGGAGAGCGTTGCTCACTGGGAGGCTCAGATCGCAGAGATCATCCAGTGggtgagCGATGAGAAGGATGCTCGAGGATACCTTCAGGCTCTGGCCACCAAGATGACCGAGGAGCTGGAAACTCTGCGCTGCTCCAGCCTGGGAACAAGACCTCTGCCTGACTCAGGACTGGCCACGCCTCCTAAGAAGCCCTGGCCTCCTATTGGTGGAGACAGGAGGGACCCGCTGTGGAAGGTGCGGCGCAGCCAGAAGTTGGACATGTCGGCCCGGCTGGAGCTGCAGTCGGCTCTGGACGCTGAGATCAGAGCCAAACAGCTGATTCAGGACGAGCTGCGGAGAGTCAAAGCTGCTAACATCCACCTGGAGagtaaGCTGAAGGAGTCTGAGGAGAGGAGTGTGGAGATGTCGGAGCAGATGGAGAATctgaggagagagatggaggacagTCGTTCTGataaaggtaTGAAGCTTCCAGACTTCCAGGACTCCATCTTTGAATATTTCAACACGTCTCCTCTGGCTCCAGACCTCACCTTCAGAACCTCAGACATAGACTCCGCCCCCATGACGTCCGAGACCACGCCCCCTTCCCCCTCCACCGTCTCCGAACATGAGGAAGTGAAAGCAGCGTCAGTCCCAGcgagcccctcccccccctcccagcTCTCAGCACTGACCTCACCAAAGtctgcagTGTGCTCCTTCGTGTGCCATGTGACCTGTAAAGACCACGCCCCCCTGGTCTGTCCAATCCCAGCCGAGCACGCCAAGAGGCCGCAGGGCATCGACGTCCAGAGAGGCATCGGCACCGCCTACAAGGGCTACGTCAGGatCCCGAAGCCCAGCGGCGTGAAGAAGGGCTGGCAGCGAGCCTACGCTTTGGTCTCCGACTGCAAACTCTTTCTCTATGATGTCCCCGAGGGAAAGTCCACCCAGCCAGGGGTGGTGGCCAGTCTGGTGCTGGATCTCAGaGACGAGGAGTTCTCGGTCAGCTCGGTCTTAGCTTCAGATGTGATCCACGCCACCAGGAAGGACATCCCCTGCATCTTCAGGGTGACCTCGTCCCAGCTGACCTCCCAGCTGTCCTCGGTGTCCCTGCTGGTCCTGGCCGAGAGCGAGGTGGAGAAGAGGAAGTGGGTCCGGATCCTGGAGGGCCTGCAGAGCATCCTGACCCAGAACCTGCTGCAGAGCGCCCGCCGGTCCAGTGCCTCGAGGCCTCGGCCTGCGCTGCCCATCATTCAAGACCCGCTGTCGCGCCGCGTGCCCGATCGGGAGAGGATCGTCCTGGGAACAGAAGATGGACTGTTTGTGGTCGAGGTCACCAGAGacgtgaTCGTGCGAGCAGCAGACAGTAAGAGGGTCTATCAGATCGACCTGATCCCGAAGGAGAAGATCGTGGCTCTGCTCTGCGGGAGGAACCGACACGTCCACCTCCACCACTGGGGGGCCCTGGAGGGGGCCGAGGCCGCCTTCGACATCAAGCTGGCCGAGACCAAAGGCTGCCAGGCCCTGACCACCGGGCTGCTCCGGCCTGGGGGGCCCGCATGCCTGCTGGCTGCCATCAAACGCCAGGTCCTGTGCTACGAGGTGTCCCGTGTGAAGCCCTACCATAAGAAGCTGTGGGAGGTCCAGGCTCCGGGCCAGGCCCAGTGGCTCGGTATGGTGCGGGACCGGCTCTGCGTGGGCTACCCGTCTGGGTTCgccctgctggccctgcaggggGAGTCCTCCCCCATCAGCCTGGTGAGCCCGGCAGACCCGTCTCTGGCGTTCCTGTCCCCGGCGACGCCGATGGACGCGCTGCACGCCACCGAGGTGGGCCCGGCAGAACTGCTGCTCTGCTTCAGCCACCTGGGGGTCTACGTGGACGGGCAGGGGCGCAGGTCCAGGACCCAGGAGCTGATGTGGCCCGCCACGCCGCTAGCATGCAGCTCCAACTCGTCCCACCTGACCGTCTACAGCGAGTACGGCCTCGACGTCTTCGACATCCACACGGCCGAGTGGGTCCAGACCATCTCGCTGCGCAAGATCAGACCTCTGAATGTTGAGGGGACCTTGAACCTGCTGAGTTCAGAGCCGCCTCGTCTCATCTACTTCAGCAACACCTCGTCAGAGGGGGACCTGACCATCCCCGAGACATCGGACTACAGCAGGAAGTTGATGGTTCGAACTCGCAGTAAGAGGAAGTTCCTCTTTAAGGTTCCTGAGGAGGAGCGCCTTCAGCAGAGGAGGGAGATGCTGAGAGATCCAGAGCTCAGGTCAAAGATGATTTCTAATCCCACAAACTTCAACCACGTGGCCCACATGGGACCAGGAGACGGCATGCAGGTCCTCATGGACCTCCCTCTGagTGTGATGCCTTCGTCTCAGGAAGAGTCCATTAAagataagccccgcccactgtCCAGTATCTCCCGGCAACAGAGGAGCAAGACGCACATCACACGCACAGcttcaggtacacacacacacacacacacacagacacacacacacagacacacCTCTAACCCCAGCAGCCCCCAGCCCCAACTCCCCCACCGCAGCCGGCTGATGCGGACAGCCTGGAGATGGACCCCTGAGGCCCCGCCCCCTGAGGCCCCCGCCCCTGAGGCCCCGCCCACCTGA

Function

symbol description
cdc42bpb Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in actomyosin structure organization and peptidyl-threonine phosphorylation. Predicted to act upstream of or within several processes, including actin cytoskeleton organization; intracellular signal transduction; and protein phosphorylation. Predicted to be located in lamellipodium. Predicted to be active in cytoplasm and cytoskeleton. Orthologous to human CDC42BPB (CDC42 binding protein kinase beta).

NR:

description
serine/threonine-protein kinase MRCK beta

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257530 False 1224 TUCP 0.61 9 36922432 36949307
TU257667 False 644 lncRNA 0.59 4 36916625 36920945
TU257668 False 715 lncRNA 0.59 6 36870560 36920945
XM_039781397.1 True 3753 mRNA 0.59 25 36875779 36950069

Neighbor

gene id symbol gene type direction distance location
ubr7 LOC100699512 coding upstream 45153 36797195 ~ 36825407 (+)
tmem251 NA coding upstream 77073 36790619 ~ 36793487 (+)
LOC120546642 NA coding upstream 96512 36757884 ~ 36774048 (+)
LOC120546644 NA coding upstream 124423 36725350 ~ 36746137 (+)
LOC120546651 NA coding upstream 188727 36666081 ~ 36681833 (+)
LOC120546696 NA non-coding upstream 4691 36843890 ~ 36865869 (+)
G190005 NA non-coding upstream 36150 36834110 ~ 36834410 (+)
LOC120546682 NA non-coding upstream 38966 36826681 ~ 36831594 (+)
G190000 NA non-coding upstream 44276 36826076 ~ 36826284 (+)
G189978 NA non-coding upstream 95001 36706881 ~ 36775559 (+)
G189943 NA non-coding downstream 159 36950228 ~ 36950678 (+)
G190030 NA non-coding downstream 20788 36970857 ~ 36971118 (+)
xrcc3 NA other upstream 206178 36652178 ~ 36664382 (+)
G189944 NA other upstream 329248 36536679 ~ 36541312 (+)
LOC120546466 NA other upstream 424925 36382908 ~ 36445635 (+)
G189897 NA other upstream 494726 36232665 ~ 36375834 (+)
G189895 LOC107578167,LOC107555837,LOC103375881,LOC103392301 other upstream 655961 36213881 ~ 36214599 (+)

Expression


Co-expression Network