ubxn2a (ubxn2a)


Basic Information

Item Value
gene id ubxn2a
gene name ubxn2a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13494938 ~ 13500594 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780951.1
TTGCATTACGACAAGAGGGGTCGATTTACGGCACTGTTATTACTTCACAGACATTGCTCAGCAGAATAGCCGCTGCACAAAACTCATGGCTGCAGATGTGTAGCCCGGGATTAACCGACAAAACACGGACTGATGGAAAACACGCAAAGTCATGAAAGAGATTGAAACCTTGGGGGGCGAGAAAGATGAAAATTCTGAAGAAAATGAAGAGGAGGCTCCAATGAGGCGTAGTTTCTCGGTAGAAGACCTCCTCGGTGAGGTGGAGAAGATCTGTTACGATGCCTCGGGGACATCAAAGGTGGAGATGGTGGTGAGGCTATGGAAGGATGGCTTCACTGTAAACGACGAGGAGTTTCGCAGCTACTCCATACCAAAGAATCAAGACTTCCTGGATGCCATCAAAAGGGGGGAGCTTCCGGCAGAGTGGGAGAGCCGAGCAGAGGAGAAGGAGCTGGAGATCAGTGTGGAGGATCTGACGGAGGAAAATTATGTTCCCAAGAAAAAGGCCTTTCATCCCTTCAGCGGGCGCGGATACCGACTTGGCAGTGTTGCACCCAGAGTAGTGGCCAGGTCACCATCTGTGCACGCGGACGGAGAATCTCCTCCTATTCCCATGGTAACACTAGACCACGCCCTTCCTGTTACCTCCCTGCAGATCTGGTTGGCTGACGGCAGAAGATTGGTGCAGAGGTTTAACCTATCGCATCGGATCGCTGATGTTCAAGATTTCGTGTCGCGCTGCCAGAGGAGCTCCCCACCTTTCGTCCTGACAACGTCAGTTCCTTTCCGGGAGCTCGACGACAAAGAATTGAGTCTAGAAGAGGCGGATTTGGCCAACGCCGTCATCGTACAGAGACCCCTAAACACACTGGCTCCGTTTGGACACTCCTGATTAAAAGGCCCCCCCCTCCTACGTAATGcatacaacacaccacacacccctTTACCGACACCTCACCATTAGCCTGACTGCAGTCTCAAGGCTTCCTGTAAGGTATACTATTTCTTTATTCTGCAGCTTGTGCTGCATTTGATGATTGTTATATTTATTCATCTCCGTGTGGGATTACCTGCGGCCTAATGGAGATGTTGTCAGTTCTTCGCCACCACAGGTGCTGAAGTGCTGTTGGTAATGCTTACTTTGTCTTTTTCCTCTGGAGGACAGTGTTTACCTGCCAACAGATCTCCCAAAACTCCCAAACTCCAGAAAGGCAAACCAATTCTGTCGCCCGTGCAGATGGTCAACCACGTGTGTCCATCTGGTCGTCTACCACATGTAACCCTCCTTCCctctcacgcacgcacgcgcacacacacgcacacacacagacacacacacacacacgcacaacaccAGCACCAGCACCACCAACATACTCTCTAAAGTCTTCCCAAACTGTGATCACCAGTTTTTCTGCACtacttacagtaaaaaaaaaaaaaaaatgaggggCTGATGTTTCAATTTGTATCTCTGAGTTTACAGTTGTATTTAAGGGACATATGATGTTGTTTGCACATTATTACtatttaaaaaagagaaaagatgaCAGCGTGTTATTTGCGTTGGCCTGTCTGTTGAGGTCTATTAAttgttttgccatttttttgcattttttttgtgtgaacatTTGCCTTTGTTCTTTTGGGGAGGGATTTAATTCAGAATGTACAATGAATTGTTTGATTTGACTGCATCCTTTCAATACATATCACATATCAAGGTACAATAAAAATCCTCCTTAAA
>XM_039780952.1
GGGTCGATTTACGGCACTGTTATTACTTCACAGACATTGCTCAGCAGAATAGCCGCTGCACAAAACTCATGGCTGCAGATGTGTAGCCCGGGATTAACCGACAAAACACGGACTGTGAAGAAAATGAAGAGGAGGCTCCAATGAGGCGTAGTTTCTCGGTAGAAGACCTCCTCGGTGAGGTGGAGAAGATCTGTTACGATGCCTCGGGGACATCAAAGGTGGAGATGGTGGTGAGGCTATGGAAGGATGGCTTCACTGTAAACGACGAGGAGTTTCGCAGCTACTCCATACCAAAGAATCAAGACTTCCTGGATGCCATCAAAAGGGGGGAGCTTCCGGCAGAGTGGGAGAGCCGAGCAGAGGAGAAGGAGCTGGAGATCAGTGTGGAGGATCTGACGGAGGAAAATTATGTTCCCAAGAAAAAGGCCTTTCATCCCTTCAGCGGGCGCGGATACCGACTTGGCAGTGTTGCACCCAGAGTAGTGGCCAGGTCACCATCTGTGCACGCGGACGGAGAATCTCCTCCTATTCCCATGGTAACACTAGACCACGCCCTTCCTGTTACCTCCCTGCAGATCTGGTTGGCTGACGGCAGAAGATTGGTGCAGAGGTTTAACCTATCGCATCGGATCGCTGATGTTCAAGATTTCGTGTCGCGCTGCCAGAGGAGCTCCCCACCTTTCGTCCTGACAACGTCAGTTCCTTTCCGGGAGCTCGACGACAAAGAATTGAGTCTAGAAGAGGCGGATTTGGCCAACGCCGTCATCGTACAGAGACCCCTAAACACACTGGCTCCGTTTGGACACTCCTGATTAAAAGGCCCCCCCCTCCTACGTAATGcatacaacacaccacacacccctTTACCGACACCTCACCATTAGCCTGACTGCAGTCTCAAGGCTTCCTGTAAGGTATACTATTTCTTTATTCTGCAGCTTGTGCTGCATTTGATGATTGTTATATTTATTCATCTCCGTGTGGGATTACCTGCGGCCTAATGGAGATGTTGTCAGTTCTTCGCCACCACAGGTGCTGAAGTGCTGTTGGTAATGCTTACTTTGTCTTTTTCCTCTGGAGGACAGTGTTTACCTGCCAACAGATCTCCCAAAACTCCCAAACTCCAGAAAGGCAAACCAATTCTGTCGCCCGTGCAGATGGTCAACCACGTGTGTCCATCTGGTCGTCTACCACATGTAACCCTCCTTCCctctcacgcacgcacgcgcacacacacgcacacacacagacacacacacacacacgcacaacaccAGCACCAGCACCACCAACATACTCTCTAAAGTCTTCCCAAACTGTGATCACCAGTTTTTCTGCACtacttacagtaaaaaaaaaaaaaaaatgaggggCTGATGTTTCAATTTGTATCTCTGAGTTTACAGTTGTATTTAAGGGACATATGATGTTGTTTGCACATTATTACtatttaaaaaagagaaaagatgaCAGCGTGTTATTTGCGTTGGCCTGTCTGTTGAGGTCTATTAAttgttttgccatttttttgcattttttttgtgtgaacatTTGCCTTTGTTCTTTTGGGGAGGGATTTAATTCAGAATGTACAATGAATTGTTTGATTTGACTGCATCCTTTCAATACATATCACATATCAAGGTACAATAAAAATCCTCCTTAAA

Function

symbol description
ubxn2a Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human UBXN2A (UBX domain protein 2A).

NR:

description
UBX domain-containing protein 2A isoform X3

GO: NA

KEGG:

id description
K24349 UBXN2A; UBX domain-containing protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780951.1 True 1747 mRNA 0.47 7 13494938 13500594
XM_039780952.1 False 1667 mRNA 0.47 6 13494938 13500577

Neighbor

gene id symbol gene type direction distance location
mut mut coding downstream 36723 13437070 ~ 13458215 (-)
LOC120546943 phip coding downstream 292601 13148651 ~ 13202337 (-)
si:dkey-261l7.2 LOC103457838,LOC106927103,LOC106964160,LOC103148020 coding downstream 349843 13141455 ~ 13145095 (-)
LOC120546166 LOC103355735,LOC104963358,LOC100702431,LOC102289960,LOC108231778 coding downstream 479711 12998089 ~ 13015227 (-)
LOC120547210 NA coding downstream 503017 12990575 ~ 12991921 (-)
LOC120546185 klhl29,LOC102787074 coding upstream 78717 13579311 ~ 13802160 (-)
trib2 trib2 coding upstream 319078 13819672 ~ 13827042 (-)
napbb napb,LOC103381049,LOC102194491,LOC102306363,LOC106518545,LOC102225024,LOC103457862,LOC107097573,LOC107378120 coding upstream 376638 13877232 ~ 13887170 (-)
gpcpd1 gpcpd1 coding upstream 388746 13889340 ~ 13910132 (-)
LOC120546266 slc23a2,LOC100699458,LOC101468039,LOC108231760,LOC106518547,LOC102297661 coding upstream 410977 13911571 ~ 13918124 (-)
LOC120546199 NA non-coding downstream 96363 13339183 ~ 13398575 (-)
G184049 NA non-coding downstream 176008 13318488 ~ 13318930 (-)
G184026 NA non-coding downstream 244502 13249591 ~ 13250436 (-)
G183981 NA non-coding downstream 460441 13034252 ~ 13034497 (-)
LOC120546274 NA non-coding downstream 609163 12884370 ~ 12885775 (-)
G184162 NA non-coding upstream 341678 13842272 ~ 13842477 (-)
G184204 plcb1 non-coding upstream 618428 14119022 ~ 14141806 (-)
G184208 NA non-coding upstream 686834 14187428 ~ 14231705 (-)
G184217 plcb4 non-coding upstream 722381 14222975 ~ 14225219 (-)
LOC120546499 NA non-coding upstream 737832 14238426 ~ 14243275 (-)
mfsd2b mfsd2b other downstream 3795 13473683 ~ 13491143 (-)
fkbp1b fkbp1b other downstream 26873 13458602 ~ 13468065 (-)
runx2b runx2,LOC102312376 other downstream 191154 13255885 ~ 13303784 (-)
hmgn3 hmgn3,LOC104958971 other downstream 279038 13145464 ~ 13215900 (-)
LOC120547209 NA other downstream 487070 12960498 ~ 13007868 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other upstream 971607 14472201 ~ 14498370 (-)
naa30 naa30,LOC102795089,LOC104960600 other upstream 1070786 14571380 ~ 14612946 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other upstream 1156583 14657177 ~ 14667601 (-)
rps29 NA other upstream 1609646 15110240 ~ 15111479 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 2288232 15788826 ~ 15795638 (-)

Expression


Co-expression Network