abcd4 (abcd4)


Basic Information

Item Value
gene id abcd4
gene name abcd4
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18778130 ~ 18790373 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780962.1
TGGTACATTAATAGGTTGTAAAGACTGCCTGGTTTAGCATTGAAAGTACTGCAAAAACCCAGAATAACTGCATTTTTGTTTACTCAATACTAAGAGAAGGCATGCAGTCTAGGCTGTGTAGTGTTATGTGTTTTACTCCCTGCCTCGGACTAGCAAATTCATGCTTAACCTTTGAGCGACATAGATAAGGTTTTAGCGTACATTCAGCCTAATCATTGGTCTTCGCGGTGCTGTTTTTATAAATTGAACTTTGGTTGATTGCTGTTTTTGGTATCTAAATCTAAAGAATTCACAAAGGTCAGCACATGGCCTGACTCAGTGCGGTCTTTTGTCGATATACATTTAGCAACCGATGAAAGATTTAAGCTGTTAATGTCAGTATTTCAATAAGTAATACTTGACAAAAATGTAACCAAGCATGACTgataataattaatgttttcacaatggatacttttttttccccccttcttAATTTTAATACAATTGTAATTTTGTTATGAGGCATTATCCAAACACTGTTTTCAAGCCTTTTAAGTATCTCTAAGCTCGGCCACCCATAACCATTAATAGCTTCCTTTTACAGTATAGCCCCATgcctacttttttttcttttttacactgTGGTTGTCCAGATGTGGCTTCATTACCTTTAGAAATAGTAGTCACGGCCagaacacagaaacagactACAAACAATTTTACTACAAATGTATAAATATCTTGTAACGGCATTTCCAGAGAGAtagtaatgtttatttttttgcagcttTTCAGGCATAAATCTTACTCATGGTTTTGTATTAAGCTTGTAAAAACTAGAAGTGAGTTTATATTTAATTGTATGAGCGAAGATGGCATTTTGTATTCTTCCAGATTGATCTTGGTATAAAAAGCTAATaaaccttttattttgaaagatcGGAGTACATTACACCGGAAGTCCGGGATTTTTCTTTTACCTACTAAAACATCCACCTTACCAGTGAGTGCATTGTGAAGTACAAGCTAAACAAGATGCCTCGTTTGGAAAAGTCAAATGGCAGAGGGACAAAAAGACTAAAGCTAGACTGGAAGTTTGTTCAGAGGTTCTGCAGCATCCAGAAGGTCCTGTTCCCATCATGGACCAGTCAAAGTGCTCTGATGTTTGGGACGCTGCTTGCTGTCACTCTGACAGAGCAGCTGATCATTTACCAAGTGGGTGTCCTCCCTAGCCACTTCTACAATGTGCTGGCAGACACAGATTACCCAGGCTTCAGGAGTCTGGTGGGCACAGCTATGGTGCTCATCTTGCTCAACTCCACATTGAAAAGTATCGACCAGTACATTTGCAATCAGATGTATGTAAGCTGGAGGAGGACGCTAACTGAGAGCCTTCATGCGTCCTACTTCCAGGGCCGAGTCTATTACACGCTCAATGTACTCAAAGAGGATATAGACAACCCAGACCAGCGAATCAGTCAGGACGCAGAGAGGTTGTGTAAGCAGATGAGCACCATGGCTAGTCGTTTGATTGTATCACCATTCACACTGGCTTACTACACCTACCACTGCTTTCATAGCACTGGTTGGATCGGTCCTGTAAGTATCTTTGGCTACTTTGTTTTTGGGACCATTGCCAATAAAATCCTCATGGGGCCGATTGTGTCTACTCTGTTTGAGCAAGAAAAACTGGAGGGAGACTTCAGATTCAAGCACATGCAGATCCGTGTCAATGCAGAGTCTGCAGCTTTTTACAGAGCCGGTAAAGTGGAGCACATGAGGACCAACCGCAGACTGCAGGCTCTGCTACAAACTCAGAAGAGTCTAATAAACAAAGAGCTCTGGCTTTACATTGGGGTAAACACCTTTGACTACGTTGGAGGTTTCCTTAGCTACATTATAATTGCCATTCCCATCTTTACTGGTATCTATGATGGTCTCACTCCTGGTGAGCTCAGTGCACTCATCAGTAAGAACGCCTTTGTGTGCATCTACTTGATAAATGGCTTCACGCAGCTAATAGACCTGTCAACCACTCTGTCAGATGTGGCTGGATACACCCACAGgaTTGGGGAGCTGAGGGAGGTGATGGATGACATCCTACGTGAGCAGTGTGACTATGACCCGGCATCAGGGGAAAGCTACGACTTTGACAGTGACTTCAACGTCCACGCAGGCCCTGTGGACACTGCCTTCATCCTGGACCATCTTTCATACAAATCTCCTTACTCAGATGAGCTGCTGGTGGAGGATTTGAGTCTGAAAATCAGCCAGGGAACACATCTACTGGTGGTGGGGAACACAGGAACCGGCAAGACGTCACTACTGAGGGTCCTCAACCGACTCTGGGAGGCACACAGCGGTTTTGTCCAGATGACCACATGTTTCGGGCCCAGAGGAACCCTCTTTCTGCCACAGAAACCTTACCTGACTGATGGCACACTGCGTGAACAGGTGATCTACCCACTGAAGGATATTTACCCTGCATCAGGGTCAGTGGACGATGACAGAATTATACAATTCCTGGAACTAGCAGGAGTGTCCAGTCTCCTAAAGCGGACAGGTGGGCTGGATGAAAAGGTGGACTGGAGCTGGTATGATGTTCTGTCTCCAGGTGAAATGCAGCGTCTCTCCTTTGCACGACTCTTCTACCTGCAGCCCAAATATGCAGTGTTGGATGAGGCCACCAGTGCTCTGACGGAGGAGGCAGAAGCACAGCTGTACAGAACCTGTAAACAGCTCGGCATGACTTTGGTCACTCTGGGACACCGCAGTAGCCTGGAGAAGTACCATGACGTCCAGTTgaaactgtgtggaggaggccTGTGGGAGTTGACCAAGTTAAAAGGTGGAAGTGGGAGTCTCAGAGAAGAAGCCACATGACTGGAGAGTCATCTCTTTGAAATCCTGGACATGCATGGCGCATCAGTGTGGGAGACAAGGATAGAAAACACTGAATTCCTCAGTTAGTAACACTCAAGTGCTCCTTCAACAAGGTACTTTAAAACCCAGAACAACTGTACTCATCCAGTTTGTATGTATTCATGGACATTGAGGCAGAGCTCAACTAAAATGTTCTGGACCCAAAGACTTTGCCAAAGGAATGGTTTGGCTCACTCTGTAATTGTAAATTCACCTATCACGACAACAAatcaggaggaaaaaaaaagacactttagATTCAGTAAGTCTTAAGTGCCTTTACATTTGTTTATTGTATTGTGTTTACAATCATTACATTGGGAATATTGGTTCCAATTTTGTAATAAATGCAATGTTCTCAGCTCTTTCTCTCAACGCCTATTAAGAGCAGAGTACATCTGTGGTTCATGCATAGTTTTAAAGAGTTGTTTACCTGATTTCATAAAAATATCATatgtacaataaaaacaaagaatATTTGTTTGA
>XR_005636828.1
TTACCTACTAAAACATCCACCTTACCAGTGAGTGCATTGTGAAGTACAAGCTAAACAAGGTAATGGTCTGTGAGACGATGCTAAAGTAAGGCAACAGTTAGCTAAGCTAATTAATGCAGCCGCGATAAGTACGAAGGGGggagtttttaattgttttgtagAAATGTGTTTGTTATTCCCCGTTGTAAGTTAACCGTTTTTCTCTTTAGCTGCTTTAACATTCGCTGTtgttaacgttaacattagtCTAAAGTTAGCTTGACCTGCTGCTTAATATTCGCTTTTCGTGACATCAATTCCGAAAaacgtagctaacgttatgggAAGTTTTATTTGCTAAAAATAATAGTCTCCTGCCGCCAGTACAGATGCCTCGTTTGGAAAAGTCAAATGGCAGAGGGACAAAAAGACTAAAGCTAGACTGGAAGTTTGTTCAGAGGTTCTGCAGCATCCAGAAGGTCCTGTTCCCATCATGGACCAGTCAAAGTGCTCTGATGTTTGGGACGCTGCTTGCTGTCACTCTGACAGAGCAGCTGATCATTTACCAAGTGGGTGTCCTCCCTAGCCACTTCTACAATGTGCTGGCAGACACAGATTACCCAGGCTTCAGGAGTCTGGTGGGCACAGCTATGGTGCTCATCTTGCTCAACTCCACATTGAAAAGTATCGACCAGTACATTTGCAATCAGATGTATGTAAGCTGGAGGAGGACGCTAACTGAGAGCCTTCATGCGTCCTACTTCCAGGGCCGAGTCTATTACACGCTCAATGTACTCAAAGAGGATATAGACAACCCAGACCAGCGAATCAGTCAGGACGCAGAGAGGTTGTGTAAGCAGATGAGCACCATGGCTAGTCGTTTGATTGTATCACCATTCACACTGGCTTACTACACCTACCACTGCTTTCATAGCACTGGTTGGATCGGTCCTGTAAGTATCTTTGGCTACTTTGTTTTTGGGACCATTGCCAATAAAATCCTCATGGGGCCGATTGTGTCTACTCTGTTTGAGCAAGAAAAACTGGAGGGAGACTTCAGATTCAAGCACATGCAGATCCGTGTCAATGCAGAGTCTGCAGCTTTTTACAGAGCCGGTAAAGTGGAGCACATGAGGACCAACCGCAGACTGCAGGCTCTGCTACAAACTCAGAAGAGTCTAATAAACAAAGAGCTCTGGCTTTACATTGGGGTAAACACCTTTGACTACGTTGGAGGTTTCCTTAGCTACATTATAATTGCCATTCCCATCTTTACTGGTATCTATGATGGTCTCACTCCTGGTGAGCTCAGTGCACTCATCAGTAAGAACGCCTTTGTGTGCATCTACTTGATAAATGGCTTCACGCAGCTAATAGACCTGTCAACCACTCTGTCAGATGTGGCTGGATACACCCACAGgaTTGGGGAGCTGAGGGAGGTGATGGATGACATCCTACGTGAGCAGTGTGACTATGACCCGGCATCAGGGGAAAGCTACGACTTTGACAGTGACTTCAACGTCCACGCAGGCCCTGTGGACACTGCCTTCATCCTGGACCATCTTTCATACAAATCTCCTTACTCAGATGAGCTGCTGGTGGAGGATTTGAGTCTGAAAATCAGCCAGGGAACACATCTACTGGTGGTGGGGAACACAGGAACCGGCAAGACGTCACTACTGAGGGTCCTCAACCGACTCTGGGAGGCACACAGCGGTTTTGTCCAGATGACCACATGTTTCGGGCCCAGAGGAACCCTCTTTCTGCCACAGAAACCTTACCTGACTGATGGCACACTGCGTGAACAGGTGATCTACCCACTGAAGGATATTTACCCTGCATCAGGGTCAGTGGACGATGACAGAATTATACAATTCCTGGAACTAGCAGGAGTGTCCAGTCTCCTAAAGCGGACAGGTGGGCTGGATGAAAAGGTGGACTGGAGCTGGTATGATGTTCTGTCTCCAGGTGAAATGCAGCGTCTCTCCTTTGCACGACTCTTCTACCTGCAGCCCAAATATGCAGTGTTGGATGAGGCCACCAGTGCTCTGACGGAGGAGGCAGAAGCACAGCTGTACAGAACCTGTAAACAGCTCGGCATGACTTTGGTCACTCTGGGACACCGCAGTAGCCTGGAGAAGTACCATGACGTCCAGTTgaaactgtgtggaggaggccTGTGGGAGTTGACCAAGTTAAAAGGTGGAAGTGGGAGTCTCAGAGAAGAAGCCACATGACTGGAGAGTCATCTCTTTGAAATCCTGGACATGCATGGCGCATCAGTGTGGGAGACAAGGATAGAAAACACTGAATTCCTCAGTTAGTAACACTCAAGTGCTCCTTCAACAAGAGCTCACGGTGGCCTTGGATGATCTCTTCAACTGCTGCAGGATCATCCAGCGTGCTGAGGTCACCCAACCCGTCCAAGTCTTGCTCCACCACTTTCCGCAGCACCCGGCGCATTATCTTACCTGAGCGGGTCTTCGGCAGCCGATGGACGAACTGTGAGAATGACATAATGTGACTAAGTAAAATTTAGTCTAAAATGTCTCTTTGCAATTTAAAGTCAGTGAGACAGAATTACCTGGATGAAGTCTGGACAGGCGTACTTGGCGATCTTTTTCAATACCATGTTGTTTAGCTGCCGAGACAGTTCCTCCTCTTGAATCTTCACACCCTTTTTTAGCACCACGAAGGCATACACACCTGAGGACACAGACAAGTCTTTACTATGATGGGCATTCTAAGTGGGAAACATCTTTTGACTCTTAACACTGGAAAAAGGTTTCTTGCTAACCTTGTCCTTTGATGTTATGTGGGTATCCTATGATAGCAGACTCAGCCACTGCAGGGTATTGATTCTGTTACGGAAATCACATTCAGGATCATCTGAAATATGTAACTGCTAAAAACCATAAATGTCTCTTTGGTTAAACATTGGAGAAAGTACCTAAATTGGCACTTTTAATGAAACTGAGAATACTTTAA

Function

symbol description
abcd4 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and long-chain fatty acid transporter activity. Predicted to be involved in fatty acid catabolic process; long-chain fatty acid import into peroxisome; and peroxisome organization. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Is expressed in endoderm; head; intermediate cell mass of mesoderm; muscle; and pronephric duct. Used to study vitamin B12 deficiency. Orthologous to human ABCD4 (ATP binding cassette subfamily D member 4).

NR:

description
ATP-binding cassette sub-family D member 4

GO: NA

KEGG:

id description
K05678 ABCD4, PXMP1L; ATP-binding cassette, subfamily D (ALD), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780962.1 True 3390 mRNA 0.43 20 18778884 18790373
XR_005636828.1 False 2967 transcript 0.47 20 18778130 18789415

Neighbor

gene id symbol gene type direction distance location
LOC120546603 LOC104951063,LOC103372632 coding downstream 87174 18687807 ~ 18690956 (-)
LOC120546605 LOC103372633,LOC101488065,LOC104964430 coding downstream 97596 18668961 ~ 18680534 (-)
LOC120546602 NA coding downstream 110411 18658909 ~ 18667719 (-)
ptk2bb ptk2b coding downstream 463663 18293837 ~ 18314467 (-)
baalcb LOC103363522,LOC102076438,LOC102297435,LOC101471426 coding downstream 574185 18198485 ~ 18203945 (-)
LOC120546718 daam1 coding upstream 28708 18819081 ~ 18869609 (-)
LOC120546626 ppp1r13b coding upstream 83361 18873734 ~ 18898311 (-)
LOC120546204 NA coding upstream 118284 18908657 ~ 18913081 (-)
LOC120547084 LOC103364980,LOC104947346 coding upstream 124494 18914867 ~ 18932089 (-)
LOC120546312 NA coding upstream 167088 18957461 ~ 18962093 (-)
G185479 NA non-coding downstream 45320 18726872 ~ 18732810 (-)
G185438 LOC104951064,LOC103372631,LOC100709203 non-coding downstream 79902 18695681 ~ 18698228 (-)
G185467 NA non-coding downstream 83334 18694554 ~ 18694796 (-)
G185454 NA non-coding downstream 141468 18636384 ~ 18636662 (-)
G185376 NA non-coding downstream 380960 18396888 ~ 18397170 (-)
G185556 NA non-coding upstream 123440 18913813 ~ 18914471 (-)
G185565 NA non-coding upstream 137952 18928325 ~ 18977441 (-)
G185619 rps6kc1 non-coding upstream 319136 19109509 ~ 19110183 (-)
LOC120546625 NA non-coding upstream 399863 19190236 ~ 19203995 (-)
G185644 NA non-coding upstream 407379 19197752 ~ 19197969 (-)
LOC120546357 LOC106525279 other downstream 130729 18640421 ~ 18647401 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other downstream 271932 18489815 ~ 18506198 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other downstream 865094 17911270 ~ 17913036 (-)
zgc:153284 NA other downstream 1011220 17764805 ~ 17766910 (-)
tbpl1 tbpl1 other downstream 1146779 17623124 ~ 17631351 (-)
LOC120546223 LOC102213764,LOC101481591 other upstream 114164 18904537 ~ 18907254 (-)
LOC120546238 efr3b,LOC101073163 other upstream 543682 19334055 ~ 19354316 (-)
LOC120546212 fam150b,LOC104941953,LOC100704438 other upstream 858154 19648527 ~ 19652927 (-)
ccdc167 ccdc167 other upstream 1056585 19846958 ~ 19849804 (-)
G186006 NA other upstream 1772064 20562437 ~ 20567479 (-)

Expression


Co-expression Network