vrtn (vrtn)


Basic Information

Item Value
gene id vrtn
gene name vrtn
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15296281 ~ 15300707 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780969.1
TCTCCACTGCTCAGCCGCCGCAGGTCCGAGGACAGAACTCTCTGGAGCTGCACGCACGCAATGGACTAAAactcccagagagagagagagagagagagagagagagatagagagagagagagagagatcaacaCGATCAGCTGTGAAACCCCTCCACTACAAACAAGCGATTTCCATTGAGTCTCTTTTTGTAGTCTCTGGACGTTCAGtTCTCGTCAGATCCCCAGGTATGATTCAGAGGAAGGAGGTGGTGTTGTCTGTTCTGGGGGAGCTCCAGGAGGCCACAGAGAGCTCCGGCCTGGACGCTCTGACCCGAGTGGCCCTGGAGGTGGACCAGATCCTTGCTCCCTTCCAGCTCCCGGAGACCCCCTGTCAGGATTTTCCCGAGTGGGCAGGCGTGGATAACTCGGCTCATGGCCTGTACCCACCCGATGCACCCATGGGCCTCCTGCCTTTAAACTGTAAGGGGGAGGGCAACCGGCTGTTTGACGCAGTAAGCATGCTGTTAGTGGGCAACACTGGACTTAGCTTGGAGCTACAGGTCCGGACAGTAGTGGAAATGGTGCTGTGGAAGAGATACTACCTTTCTGGAATGATCGATTCAAAAATTATGCTTCAGGCTGTTCGCTTCAGCCTCTGTGCCGAAGAGTCTGAGGACATGCTCAACCTGCCTGTAACAGTCCTGGAGGCCATCTTCGACGCCGACGTCAAAGCGTCCTGCTTCCCCGGCTCCTATGCCAACATGTGGCACGTGTATGCGCTTTCGTCAGTCTTACAGTTTAACATCTACTCCATCTATCCCAAGTTCAACCTTAAGATCCGGCCCTATTTCAACCGTGTCATACGTCCAAGGCCGTGGCCTAAAGACTGTGAGCCGCTAACCCTCCACATCATGTGGTCTGGAGAGCTGCAGTCTGAGTCGTTGTTCAGGCCGAACCACTTTGTGGCACTAGTCCAAACAAGAGACCTCACGTTTGGAAGCCCTGACAGCCAGCAGAGGGTGTCGCCGACGAAGAGCGAGGACCTGCTGAACCGGGACCTGCAGCTTTCCTACCCGGGTCTAAAGGACAAGTACAACATCACCAAGAGGACCTTCTACCGCTGGAAGAGGCAGACGCAGGAGCACTGCAAAAAGTCAGCAGCCAGGTACGAGGCAAAGTATTTCCTGCAGGCCTGCTACTTGGAGGGCAAGCTCATCCCTCTGCACCAGTTTAAAGAGTTTTTCCCTGAGATCTCAAGGTCGTCGTACTACAACTGGAAGCAAGAGCTCCTGAAAACCGGAGGAAACTTCTCCACCTCATCATCCGCTGGAGAGATTAGTCCCGGAGAGAGCACGGAACAGGAGACCTGGTCTTCGCCTGAAGCGAAGCAGTTTGAGCCAGACCATAATGACAGTGTGGCGAGCATGTTTGGCCTCAACCTCGGCAAGCTGGACCTGGAGCGGGCCCAGACTGTAGCTCACATGCAGGAAGCTAAGCGCTGTCTGCAAAATTGCATCGCCATGAACGCCTCCCTCCCCTTCAGGATCTTCAAAAGAAATTTCCCAGGGATCTCCAGATCAACCTACTACAACTGGAGGAGAGAAGCCATGCTGTTCAACGGCGGTTACAAAGGCAGCGTTGGCAGCAGTGAGGACAGCTCAGATGCTGACAAGAGCCATAGTCCAAAAAGTCTGTCCCCAGTCCTGCATCACACCAACCAGCTGTTCGCGCCCAGAAGGAGAATCTgtggacaaaaacacaaaagtttCATGCTGGCGTACATCAGTAAAAAACAGCTCAGAGATGTTGCAAAGCTACATGTCCAGAAGTTCAATTGGTCCCTGACGAAGTTCAAGCTCAAGTTCCCAACCATGTCCGCTTCTTTCTTCTGGCTTTGGCGTAGCAGTCGAAACCGCAAGAAGAAGATCGGCATGCAGAGCACAGAGCTCAACCTTCCTGAGAGTCTGGAGAGCACTGCTCCAGAAAACAAGATTATGGAGCGGAGGATGGATAGTCAGCATGTGCTCCCATTTGTTGAGAGTCCTAAACCTCTAGAAAGCTCCCCCATGCCCCCGTTTCATGCCCCACATCCAAAGCACATCATTCACAGCAAGGCGCCCGTAGATGAGCAGATGTTCGCGATGGATGTTGTGGCTCTGGCCAACTTCAAGGCCAAGGCCAAGCTCTTCCTGCAGCAACGCTTTGAGGAGAAATCCTTCCCCACGTTTAAAGAATTCAGGTCTTACTTCCCTTTCACGCCACGCTCAACGTACTACATGTGGAAGCGAGCTTTGCATCATGGGGTGTCGCTGGTTCATGGGTAAATGCCCAACgcttttatctaaaaaaaatggGCTTTTAGGAGCGACATGAAAGCTCTGTTGAAGAACTTCTTGACCCCAAAAACCTCCCATGCATCTCTCCGCCGGTGCATTTTACTGTGAACATACTACACAAGTTTACTTTATGTTCTAAAAGACTGTTAAGTGCACCGGCTTAGCATCTAAATGCATTGTGTCCTTCGTCTGCCCCACCACCACAGCTCATTCCTCCCTCCTGGACATTTGCACGTGTGTGAAAAGAAACCGAGTTGTGGGTCAGTTTAGACCCTGCATGTTTCCCTCCAGGCAAAAGGCAGTTCAAAGCTGTTTAGTGGCATTTTGTTTGAAGCTGTTTCTCCTCCATTCTCCTTTAATCCTTGCTAAGCATTGTACTCAGggtcctttttatttttcagttttcattGTAGTAAGTTTGTTAATGCTTAAAagtattatttttgttgttgttgatgcttGTGATATTGATCTGGGAGATTCCTAGtggtttcatatttttttttatacttaaaatgtaaaaaaaagccaGTATTTGTTTTCAGAGATGAGTTTACTCCTTCTTGTTCAATCTTCTGTAAACAGGGGTTCAGTCTTTTTTCATTGTTCTACTTTTGATTATTGAATGTACACATTTTGTGCACCAAAGTTTTAGGTGGTTATCTCAaggttttggctttttttttgatgacctacttttaaaatgcctctTTAACTTTTGGTGATGCACAATATATAAACTGAGTTTTGTCACACTTACACTGTATTTGCACTGAAATAGTTCCCATGACACTGTTGAATGTATTGTCTTAACCATCATGCACACTTTGGTTAAGTTGGAATTTTCCAACAATTctgttttagaaaaaaaaaatgtttacatggTTTCTTTACTTGAAAACTGAATAtaaatgaagattttttttattttttgtacgaTCCTTCATTCCAAACTACCTATTTTCTTGCAACATTGGGGAATATTTGCCTTTTATAAGCTTTGTTTGTCTGCTGTTCTTCACTAAATGAAGTTCCACTTCCAGTTCTCTCCACACAGACAAACTTGTTTTGCACAACTTCCACTGTAATAACCctaaataatacatttcagTTTACTTTGTACTTATGACATGTCTGGAATGGGTACTGTTGATACTGGcagctttgttttgtagtcaGTCAGTAGGTAAGGAAATCTGTGCTGTATATTAATAAACCATCAACCATCATCAA
>XM_039780970.1
TTCGCAGGTTCAGGAAAGTGTTTGAAATTACAGAAACGAGCAAATACATCACTGAGAGCATAAAAATAACACAACACGGCGCGACACAAAtTCTCGTCAGATCCCCAGGTATGATTCAGAGGAAGGAGGTGGTGTTGTCTGTTCTGGGGGAGCTCCAGGAGGCCACAGAGAGCTCCGGCCTGGACGCTCTGACCCGAGTGGCCCTGGAGGTGGACCAGATCCTTGCTCCCTTCCAGCTCCCGGAGACCCCCTGTCAGGATTTTCCCGAGTGGGCAGGCGTGGATAACTCGGCTCATGGCCTGTACCCACCCGATGCACCCATGGGCCTCCTGCCTTTAAACTGTAAGGGGGAGGGCAACCGGCTGTTTGACGCAGTAAGCATGCTGTTAGTGGGCAACACTGGACTTAGCTTGGAGCTACAGGTCCGGACAGTAGTGGAAATGGTGCTGTGGAAGAGATACTACCTTTCTGGAATGATCGATTCAAAAATTATGCTTCAGGCTGTTCGCTTCAGCCTCTGTGCCGAAGAGTCTGAGGACATGCTCAACCTGCCTGTAACAGTCCTGGAGGCCATCTTCGACGCCGACGTCAAAGCGTCCTGCTTCCCCGGCTCCTATGCCAACATGTGGCACGTGTATGCGCTTTCGTCAGTCTTACAGTTTAACATCTACTCCATCTATCCCAAGTTCAACCTTAAGATCCGGCCCTATTTCAACCGTGTCATACGTCCAAGGCCGTGGCCTAAAGACTGTGAGCCGCTAACCCTCCACATCATGTGGTCTGGAGAGCTGCAGTCTGAGTCGTTGTTCAGGCCGAACCACTTTGTGGCACTAGTCCAAACAAGAGACCTCACGTTTGGAAGCCCTGACAGCCAGCAGAGGGTGTCGCCGACGAAGAGCGAGGACCTGCTGAACCGGGACCTGCAGCTTTCCTACCCGGGTCTAAAGGACAAGTACAACATCACCAAGAGGACCTTCTACCGCTGGAAGAGGCAGACGCAGGAGCACTGCAAAAAGTCAGCAGCCAGGTACGAGGCAAAGTATTTCCTGCAGGCCTGCTACTTGGAGGGCAAGCTCATCCCTCTGCACCAGTTTAAAGAGTTTTTCCCTGAGATCTCAAGGTCGTCGTACTACAACTGGAAGCAAGAGCTCCTGAAAACCGGAGGAAACTTCTCCACCTCATCATCCGCTGGAGAGATTAGTCCCGGAGAGAGCACGGAACAGGAGACCTGGTCTTCGCCTGAAGCGAAGCAGTTTGAGCCAGACCATAATGACAGTGTGGCGAGCATGTTTGGCCTCAACCTCGGCAAGCTGGACCTGGAGCGGGCCCAGACTGTAGCTCACATGCAGGAAGCTAAGCGCTGTCTGCAAAATTGCATCGCCATGAACGCCTCCCTCCCCTTCAGGATCTTCAAAAGAAATTTCCCAGGGATCTCCAGATCAACCTACTACAACTGGAGGAGAGAAGCCATGCTGTTCAACGGCGGTTACAAAGGCAGCGTTGGCAGCAGTGAGGACAGCTCAGATGCTGACAAGAGCCATAGTCCAAAAAGTCTGTCCCCAGTCCTGCATCACACCAACCAGCTGTTCGCGCCCAGAAGGAGAATCTgtggacaaaaacacaaaagtttCATGCTGGCGTACATCAGTAAAAAACAGCTCAGAGATGTTGCAAAGCTACATGTCCAGAAGTTCAATTGGTCCCTGACGAAGTTCAAGCTCAAGTTCCCAACCATGTCCGCTTCTTTCTTCTGGCTTTGGCGTAGCAGTCGAAACCGCAAGAAGAAGATCGGCATGCAGAGCACAGAGCTCAACCTTCCTGAGAGTCTGGAGAGCACTGCTCCAGAAAACAAGATTATGGAGCGGAGGATGGATAGTCAGCATGTGCTCCCATTTGTTGAGAGTCCTAAACCTCTAGAAAGCTCCCCCATGCCCCCGTTTCATGCCCCACATCCAAAGCACATCATTCACAGCAAGGCGCCCGTAGATGAGCAGATGTTCGCGATGGATGTTGTGGCTCTGGCCAACTTCAAGGCCAAGGCCAAGCTCTTCCTGCAGCAACGCTTTGAGGAGAAATCCTTCCCCACGTTTAAAGAATTCAGGTCTTACTTCCCTTTCACGCCACGCTCAACGTACTACATGTGGAAGCGAGCTTTGCATCATGGGGTGTCGCTGGTTCATGGGTAAATGCCCAACgcttttatctaaaaaaaatggGCTTTTAGGAGCGACATGAAAGCTCTGTTGAAGAACTTCTTGACCCCAAAAACCTCCCATGCATCTCTCCGCCGGTGCATTTTACTGTGAACATACTACACAAGTTTACTTTATGTTCTAAAAGACTGTTAAGTGCACCGGCTTAGCATCTAAATGCATTGTGTCCTTCGTCTGCCCCACCACCACAGCTCATTCCTCCCTCCTGGACATTTGCACGTGTGTGAAAAGAAACCGAGTTGTGGGTCAGTTTAGACCCTGCATGTTTCCCTCCAGGCAAAAGGCAGTTCAAAGCTGTTTAGTGGCATTTTGTTTGAAGCTGTTTCTCCTCCATTCTCCTTTAATCCTTGCTAAGCATTGTACTCAGggtcctttttatttttcagttttcattGTAGTAAGTTTGTTAATGCTTAAAagtattatttttgttgttgttgatgcttGTGATATTGATCTGGGAGATTCCTAGtggtttcatatttttttttatacttaaaatgtaaaaaaaagccaGTATTTGTTTTCAGAGATGAGTTTACTCCTTCTTGTTCAATCTTCTGTAAACAGGGGTTCAGTCTTTTTTCATTGTTCTACTTTTGATTATTGAATGTACACATTTTGTGCACCAAAGTTTTAGGTGGTTATCTCAaggttttggctttttttttgatgacctacttttaaaatgcctctTTAACTTTTGGTGATGCACAATATATAAACTGAGTTTTGTCACACTTACACTGTATTTGCACTGAAATAGTTCCCATGACACTGTTGAATGTATTGTCTTAACCATCATGCACACTTTGGTTAAGTTGGAATTTTCCAACAATTctgttttagaaaaaaaaaatgtttacatggTTTCTTTACTTGAAAACTGAATAtaaatgaagattttttttattttttgtacgaTCCTTCATTCCAAACTACCTATTTTCTTGCAACATTGGGGAATATTTGCCTTTTATAAGCTTTGTTTGTCTGCTGTTCTTCACTAAATGAAGTTCCACTTCCAGTTCTCTCCACACAGACAAACTTGTTTTGCACAACTTCCACTGTAATAACCctaaataatacatttcagTTTACTTTGTACTTATGACATGTCTGGAATGGGTACTGTTGATACTGGcagctttgttttgtagtcaGTCAGTAGGTAAGGAAATCTGTGCTGTATATTAATAAACCATCAACCATCATCAA

Function

symbol description
vrtn Enables DNA-binding transcription repressor activity, RNA polymerase II-specific. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in chromatin. Is expressed in several structures, including blastodisc; margin; oocyte; tail bud; and yolk. Orthologous to human VRTN (vertebrae development associated).

NR:

description
PREDICTED: vertnin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780969.1 True 3550 mRNA 0.47 3 15296281 15300707
XM_039780970.1 False 3431 mRNA 0.47 3 15296616 15300707

Neighbor

gene id symbol gene type direction distance location
slc25a29 LOC103369942,LOC106518591 coding upstream 9430 15277585 ~ 15286851 (+)
ppp2r5cb LOC103369946,LOC101473650,LOC100694131,LOC104924693 coding upstream 122699 15142703 ~ 15173582 (+)
hsp90aa1.2 LOC107100300,LOC103369947,LOC105919227,LOC103155532,LOC103457915 coding upstream 154888 15135367 ~ 15141393 (+)
mgat2 mgat2 coding upstream 179497 15113170 ~ 15116784 (+)
LOC120546410 NA coding upstream 341365 14938918 ~ 14954916 (+)
dll4 dll4,LOC104955063 coding downstream 287376 15588083 ~ 15597893 (+)
chac1 chac1 coding downstream 301628 15602335 ~ 15604166 (+)
zfyve1 LOC100698556 coding downstream 379754 15680461 ~ 15687727 (+)
stx7l stx7 coding downstream 429340 15730047 ~ 15738980 (+)
ccn2a ctgf coding downstream 471953 15772660 ~ 15776217 (+)
LOC120547009 NA non-coding upstream 31564 15257133 ~ 15264717 (+)
G184431 NA non-coding upstream 93766 15202306 ~ 15202515 (+)
G184419 NA non-coding upstream 122151 15173690 ~ 15174130 (+)
G184389 NA non-coding upstream 184676 15110243 ~ 15111605 (+)
G184390 NA non-coding upstream 186204 15109634 ~ 15110077 (+)
G184461 NA non-coding downstream 19311 15320018 ~ 15320239 (+)
G184463 NA non-coding downstream 21039 15321746 ~ 15322122 (+)
G184465 NA non-coding downstream 21868 15322575 ~ 15322888 (+)
G184474 NA non-coding downstream 177784 15478491 ~ 15479080 (+)
G184481 NA non-coding downstream 192497 15493204 ~ 15493527 (+)
LOC120546207 NA other upstream 3029 15289674 ~ 15293252 (+)
hsp90aa1.1 LOC103369948 other upstream 161421 15129476 ~ 15134860 (+)
G184258 NA other upstream 766911 14525136 ~ 14529370 (+)
LOC120546619 LOC103359912,LOC102080314 other upstream 871417 14393440 ~ 14424864 (+)
G184231 NA other upstream 915094 14362341 ~ 14381187 (+)
G184458 NA other downstream 1218 15301925 ~ 15318836 (+)
rhov rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886 other downstream 359866 15660573 ~ 15663661 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other downstream 394237 15694944 ~ 15719632 (+)
LOC120546249 NA other downstream 613879 15914586 ~ 15968123 (+)
nkain2 nkain2 other downstream 947387 16248094 ~ 16391851 (+)

Expression


Co-expression Network